本文整理汇总了Python中pymatgen.io.vasp.inputs.VaspInput.run_vasp方法的典型用法代码示例。如果您正苦于以下问题：Python VaspInput.run_vasp方法的具体用法？Python VaspInput.run_vasp怎么用？Python VaspInput.run_vasp使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类pymatgen.io.vasp.inputs.VaspInput的用法示例。
在下文中一共展示了VaspInput.run_vasp方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: VaspInputTest
# 需要导入模块: from pymatgen.io.vasp.inputs import VaspInput [as 别名]
# 或者: from pymatgen.io.vasp.inputs.VaspInput import run_vasp [as 别名]
class VaspInputTest(PymatgenTest):
def setUp(self):
filepath = self.TEST_FILES_DIR / 'INCAR'
incar = Incar.from_file(filepath)
filepath = self.TEST_FILES_DIR / 'POSCAR'
poscar = Poscar.from_file(filepath,check_for_POTCAR=False)
if "PMG_VASP_PSP_DIR" not in os.environ:
os.environ["PMG_VASP_PSP_DIR"] = str(self.TEST_FILES_DIR)
filepath = self.TEST_FILES_DIR / 'POTCAR'
potcar = Potcar.from_file(filepath)
filepath = self.TEST_FILES_DIR / 'KPOINTS.auto'
kpoints = Kpoints.from_file(filepath)
self.vinput = VaspInput(incar, kpoints, poscar, potcar)
def test_to_from_dict(self):
d = self.vinput.as_dict()
vinput = VaspInput.from_dict(d)
comp = vinput["POSCAR"].structure.composition
self.assertEqual(comp, Composition("Fe4P4O16"))
def test_write(self):
tmp_dir = Path("VaspInput.testing")
self.vinput.write_input(tmp_dir)
filepath = tmp_dir / "INCAR"
incar = Incar.from_file(filepath)
self.assertEqual(incar["NSW"], 99)
for name in ("INCAR", "POSCAR", "POTCAR", "KPOINTS"):
(tmp_dir / name).unlink()
tmp_dir.rmdir()
def test_run_vasp(self):
# To add some test.
with ScratchDir(".") as d:
self.vinput.run_vasp(d, vasp_cmd=["cat", "INCAR"])
with open(os.path.join(d, "vasp.out"), "r") as f:
output = f.read()
self.assertEqual(output.split("\n")[0], "ALGO = Damped")
def test_from_directory(self):
vi = VaspInput.from_directory(self.TEST_FILES_DIR,
optional_files={"CONTCAR.Li2O": Poscar})
self.assertEqual(vi["INCAR"]["ALGO"], "Damped")
self.assertIn("CONTCAR.Li2O", vi)
d = vi.as_dict()
vinput = VaspInput.from_dict(d)
self.assertIn("CONTCAR.Li2O", vinput)