本文整理汇总了Python中pybloomfilter.BloomFilter.close方法的典型用法代码示例。如果您正苦于以下问题：Python BloomFilter.close方法的具体用法？Python BloomFilter.close怎么用？Python BloomFilter.close使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类pybloomfilter.BloomFilter的用法示例。
在下文中一共展示了BloomFilter.close方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: create_ref_bloom_filter
# 需要导入模块: from pybloomfilter import BloomFilter [as 别名]
# 或者: from pybloomfilter.BloomFilter import close [as 别名]
def create_ref_bloom_filter(reference_file, error_rate, bf_file, format="fasta"):
"""From a given FASTA reference sequence creates a bloom filter file
from each read.
"""
if format == "fasta":
file_it = FastaIterator
record = lambda it: (seq.seq for seq in it)
elif format == "fastq":
file_it = FastqGeneralIterator
record = lambda it: (seq for _, seq, _ in it)
capacity = total_reads(reference_file)
with open(reference_file) as handle:
it = file_it(handle)
read_it = record(it)
read_len = 109
read_in = []
read = []
buffer = []
bf = BloomFilter(capacity, error_rate, bf_file)
sequence = read_it.next()
step = read_len
i = 0
while i < len(sequence):
read = sequence[i:i + read_len - 1]
i += step
print(read)
bf.update(read)
bf.close()示例2: process
# 需要导入模块: from pybloomfilter import BloomFilter [as 别名]
# 或者: from pybloomfilter.BloomFilter import close [as 别名]
def process(files):
#Iterate over the lines of all files listed in sys.argv[1:], defaulting to sys.stdin if the list is empty.
#If a filename is '-', it is also replaced by sys.stdin.
if os.path.isfile(bloomfile):
UNIQUES = BloomFilter.open(bloomfile)
else:
UNIQUES = BloomFilter(MAXUNIQUES, ACCUACY, bloomfile)
for record in fileinput.input(files):
record = str(record).strip()
if not record in UNIQUES:
UNIQUES.add(record)
print record
UNIQUES.sync()
UNIQUES.close()