本文整理汇总了Python中numpy.numpy_get_include函数的典型用法代码示例。如果您正苦于以下问题：Python numpy_get_include函数的具体用法？Python numpy_get_include怎么用？Python numpy_get_include使用的例子？那么恭喜您, 这里精选的函数代码示例或许可以为您提供帮助。
在下文中一共展示了numpy_get_include函数的12个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: main
def main():
if float(sys.version[:3]) < 2.7 or float(sys.version[:3]) >= 2.8:
sys.stderr.write("CRITICAL: Python version must be 2.7!\n")
sys.exit(1)
ext_modules = [
Extension("MACS2.cProb", ["MACS2/cProb.c"], libraries=["m"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cParser", ["MACS2/IO/cParser.c"], include_dirs=numpy_include_dir),
Extension("MACS2.cPileup", ["MACS2/cPileup.c"], include_dirs=numpy_include_dir),
Extension("MACS2.cArray", ["MACS2/cArray.c"]),
Extension("MACS2.cPeakModel", ["MACS2/cPeakModel.c"], include_dirs=numpy_include_dir),
Extension("MACS2.cPeakDetect", ["MACS2/cPeakDetect.c"]),
Extension("MACS2.cSignal", ["MACS2/cSignal.c"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cPeakIO", ["MACS2/IO/cPeakIO.c"]),
Extension("MACS2.IO.cBedGraphIO", ["MACS2/IO/cBedGraphIO.c"]),
Extension("MACS2.IO.cFixWidthTrack", ["MACS2/IO/cFixWidthTrack.c"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cPairedEndTrack", ["MACS2/IO/cPairedEndTrack.c"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cBedGraph", ["MACS2/IO/cBedGraph.c"], libraries=["m"]),
Extension("MACS2.IO.cScoreTrack", ["MACS2/IO/cScoreTrack.c"], include_dirs=numpy_include_dir),
# Extension("MACS2.IO.cDiffScore", ["MACS2/IO/cDiffScore.c"], include_dirs=numpy_include_dir ),
Extension("MACS2.IO.cCallPeakUnit", ["MACS2/IO/cCallPeakUnit.c"], include_dirs=numpy_include_dir),
Extension("MACS2.hashtable", ["MACS2/hashtable.c"], include_dirs=["MACS2/", numpy_get_include()]),
Extension(
"MACS2.Statistics",
["MACS2/Statistics.c", "MACS2/cStatistics.c"],
libraries=["m"],
include_dirs=["MACS2/", numpy_get_include()],
),
]
setup(
name="MACS2",
version="2.1.0.20140616",
description="Model Based Analysis for ChIP-Seq data",
author="Tao Liu",
author_email="[email protected]",
url="http://github.com/taoliu/MACS/",
package_dir={"MACS2": "MACS2"},
packages=["MACS2", "MACS2.IO"], # , 'MACS2.data'],
# package_data={'MACS2': ['data/*.dat']},
scripts=["bin/macs2"],
classifiers=[
"Development Status :: 4 - Beta",
"Environment :: Console",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"Operating System :: MacOS :: MacOS X",
"Operating System :: POSIX",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Programming Language :: Python",
],
install_requires=[
"numpy>=1.6",
#'scipy',
],
cmdclass=command_classes,
ext_modules=ext_modules,
)示例2: doall
def doall():
setup(name='HRTime', version='1.0',
description = 'a package providing access to the high resolution timer',
ext_modules = [Extension('HRTime',
sources=['HRTime.c'],
)])
setup(name='rtsched', version='1.0',
description = 'a package providing (limited) real-time processing/priority functionality',
ext_modules = [Extension('rtsched',
sources=['rtsched/rtsched.c'],
)])
# these come from the SciPy cookbook:
setup(name='rebin', version='1.0',
description = 'a package providing the rebin "resampling function',
py_modules=['rebin'], cmdclass={'build_py':build_py}, )
setup(name='DataFrame', version='1.0',
description = 'a package providing R-like data.frame functionality',
py_modules=['DataFrame'], cmdclass={'build_py':build_py} )
# these depend on numpy:
if has_numpy:
setup(name='sincos', version='1.0',
description = 'a package providing a sincos function',
ext_modules = [Extension('sincos',
sources=['sincos.c','mips_sincos.c','cephes_sincos.c'],
depends=['sse_mathfun/sse_mathfun.h'],
include_dirs = [numpy_get_include()],
extra_compile_args =['-g','-msse2','-faltivec','-DHAVE_VECLIB','-framework','Accelerate'],
extra_link_args =['-g','-msse2','-faltivec','-framework','Accelerate']
)])
setup(name='rjvbFilt', version='1.0',
description = 'a package providing some filtring functions',
ext_modules = [Extension('rjvbFilt',
sources=['rjvbFilters.cpp','rjvbFilt.c'],
depends=['ParsedSequence.h','rjvbFilters.c','rjvbFilters.h'],
include_dirs = [numpy_get_include()],
extra_compile_args =['-g','-msse2','-faltivec','-framework','macstl','-UNDEBUG'],
extra_link_args =['-g','-msse2','-faltivec']
)])
setup(name='fmadd', version='1.0',
description = 'a package providing an fmadd function',
ext_modules = [Extension('fmadd',
sources=['fmadd.cpp'],
depends=['fmadd.c'],
extra_compile_args =['-g','-msse2','-faltivec','-UNDEBUG'],
include_dirs = [numpy_get_include()]
)])示例3: doall
def doall():
setup(name='HRTime', version='1.0',
description = 'a package providing access to the high resolution timer',
ext_modules = [Extension('HRTime',
sources=['HRTime.c'],
libraries=['rt'],
)])
setup(name='rtsched', version='1.0',
description = 'a package providing (limited) real-time processing/priority functionality',
ext_modules = [Extension('rtsched',
sources=['rtsched/rtsched.c'],
)])
# these come from the SciPy cookbook:
setup(name='rebin', version='1.0',
description = 'a package providing the rebin "resampling function',
py_modules=['rebin'], cmdclass={'build_py':build_py}, )
setup(name='DataFrame', version='1.0',
description = 'a package providing R-like data.frame functionality',
py_modules=['DataFrame'], cmdclass={'build_py':build_py} )
# these depend on numpy:
setup(name='rjvbFilt', version='1.0',
description = 'a package providing some filtring functions',
ext_modules = [Extension('rjvbFilt',
sources=['rjvbFilt.c','rjvbFilters.c'],
depends=['ParsedSequence.h'],
include_dirs = [numpy_get_include()],
extra_compile_args =['-mfpmath=sse','-msse','-msse2','-msse3','-msse4','-ftree-vectorize']
)])
setup(name='sincos', version='1.0',
description = 'a package providing a sincos function',
ext_modules = [Extension('sincos',
sources=['sincos.c','mips_sincos.c','cephes_sincos.c'],
include_dirs = [numpy_get_include()],
extra_compile_args =['-mfpmath=sse','-msse','-msse2','-msse3','-msse4','-ftree-vectorize']
)])
setup(name='fmadd', version='1.0',
description = 'a package providing an fmadd function',
ext_modules = [Extension('fmadd',
sources=['fmadd.c'],
include_dirs = [numpy_get_include()]
)])示例4: main
def main():
if float(sys.version[:3])<2.7 or float(sys.version[:3])>=2.8:
sys.stderr.write("CRITICAL: Python version must be 2.7!\n")
sys.exit(1)
ext_modules = [Extension("MACS2.cProb", ["MACS2/cProb.c"], libraries=["m"], include_dirs=numpy_include_dir ),
Extension("MACS2.IO.cParser",["MACS2/IO/cParser.c"], include_dirs=numpy_include_dir),
Extension("MACS2.cPileup", ["MACS2/cPileup.c"], include_dirs=numpy_include_dir ),
Extension("MACS2.cArray", ["MACS2/cArray.c"]),
Extension("MACS2.cPeakModel", ["MACS2/cPeakModel.c"], include_dirs=numpy_include_dir),
Extension("MACS2.cPeakDetect", ["MACS2/cPeakDetect.c"]),
Extension("MACS2.cSignal", ["MACS2/cSignal.c"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cPeakIO", ["MACS2/IO/cPeakIO.c"],),
Extension("MACS2.IO.cBedGraphIO", ["MACS2/IO/cBedGraphIO.c"],),
Extension("MACS2.IO.cFixWidthTrack", ["MACS2/IO/cFixWidthTrack.c"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cPairedEndTrack", ["MACS2/IO/cPairedEndTrack.c"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cBedGraph", ["MACS2/IO/cBedGraph.c"], libraries=["m"]),
Extension("MACS2.IO.cScoreTrack", ["MACS2/IO/cScoreTrack.c"], include_dirs=numpy_include_dir ),
Extension("MACS2.IO.cCompositeScoreTrack", ["MACS2/IO/cCompositeScoreTrack.c"],),
Extension("MACS2.hashtable", ["MACS2/hashtable.c"],
include_dirs=["MACS2/",numpy_get_include()]),
]
setup(name="MACS2",
version="2.0.10.09132012",
description="Model Based Analysis for ChIP-Seq data",
author='Tao Liu',
author_email='[email protected]',
url='http://github.com/taoliu/MACS/',
package_dir={'MACS2' : 'MACS2'},
packages=['MACS2', 'MACS2.IO'],#, 'MACS2.data'],
#package_data={'MACS2': ['data/*.dat']},
scripts=['bin/macs2',
],
classifiers=[
'Development Status :: 4 - Beta',
'Environment :: Console',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: Artistic License',
'Operating System :: MacOS :: MacOS X',
'Operating System :: POSIX',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Programming Language :: Python',
],
install_requires=[
'numpy>=1.6',
],
cmdclass = command_classes,
ext_modules = ext_modules
)示例5: main
@status: beta
@version: $Revision$
@author: Tao Liu
@contact: [email protected]
"""
import os
import sys
from distutils.core import setup, Extension
# Use build_ext from Cython if found
command_classes = {}
try:
from numpy import get_include as numpy_get_include
numpy_include_dir = [numpy_get_include()]
except:
numpy_include_dir = []
sys.stderr.write("CRITICAL:Numpy must be installed!\n")
sys.exit(1)
def main():
if float(sys.version[:3])<2.7 or float(sys.version[:3])>=2.8:
sys.stderr.write("CRITICAL: Python version must be 2.7!\n")
sys.exit(1)
ext_modules = [Extension("MACS2.cProb", ["MACS2/cProb.c"], libraries=["m"], include_dirs=numpy_include_dir ),
Extension("MACS2.IO.cParser",["MACS2/IO/cParser.c"], include_dirs=numpy_include_dir),
Extension("MACS2.cPileup", ["MACS2/cPileup.c"], include_dirs=numpy_include_dir ),
Extension("MACS2.cArray", ["MACS2/cArray.c"]),
Extension("MACS2.cPeakModel", ["MACS2/cPeakModel.c"], include_dirs=numpy_include_dir), 示例6: main
def main():
if float(sys.version[:3])<2.7 or float(sys.version[:3])>=2.8:
sys.stderr.write("CRITICAL: Python version must be 2.7!\n")
sys.exit(1)
if has_cython:
ext_modules = [Extension("MACS2.cProb", ["MACS2/cProb.pyx"], libraries=["m"]),
Extension("MACS2.IO.cParser",["MACS2/IO/cParser.pyx"]),
Extension("MACS2.cPileup", ["MACS2/cPileup.pyx"], include_dirs=numpy_include_dir ),
Extension("MACS2.cArray", ["MACS2/cArray.pyx"]),
Extension("MACS2.cPeakModel", ["MACS2/cPeakModel.pyx"], include_dirs=numpy_include_dir),
Extension("MACS2.cPeakDetect", ["MACS2/cPeakDetect.pyx"]),
Extension("MACS2.IO.cPeakIO", ["MACS2/IO/cPeakIO.pyx"],),
Extension("MACS2.IO.cBedGraphIO", ["MACS2/IO/cBedGraphIO.pyx"],),
Extension("MACS2.IO.cFixWidthTrack", ["MACS2/IO/cFixWidthTrack.pyx"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cBedGraph", ["MACS2/IO/cBedGraph.pyx"], libraries=["m"]),
Extension("MACS2.IO.cScoreTrack", ["MACS2/IO/cScoreTrack.pyx"], include_dirs=numpy_include_dir ),
Extension("MACS2.IO.cCompositeScoreTrack", ["MACS2/IO/cCompositeScoreTrack.pyx"],),
Extension("MACS2.hashtable", ["MACS2/hashtable.pyx"],include_dirs=["MACS2/",numpy_get_include()]),
]
else:
ext_modules = [Extension("MACS2.cProb", ["MACS2/cProb.c"], libraries=["m"]),
Extension("MACS2.IO.cParser",["MACS2/IO/cParser.c"]),
Extension("MACS2.cPileup", ["MACS2/cPileup.c"], include_dirs=numpy_include_dir),
Extension("MACS2.cArray", ["MACS2/cArray.c"]),
Extension("MACS2.cPeakModel", ["MACS2/cPeakModel.c"], include_dirs=numpy_include_dir),
Extension("MACS2.cPeakDetect", ["MACS2/cPeakDetect.c"]),
Extension("MACS2.IO.cPeakIO", ["MACS2/IO/cPeakIO.c"],),
Extension("MACS2.IO.cBedGraphIO", ["MACS2/IO/cBedGraphIO.c"],),
Extension("MACS2.IO.cFixWidthTrack", ["MACS2/IO/cFixWidthTrack.c"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cBedGraph", ["MACS2/IO/cBedGraph.c"], libraries=["m"]),
Extension("MACS2.IO.cScoreTrack", ["MACS2/IO/cScoreTrack.c"], include_dirs=numpy_include_dir),
Extension("MACS2.IO.cCompositeScoreTrack", ["MACS2/IO/cCompositeScoreTrack.c"],),
Extension("MACS2.hashtable", ["MACS2/hashtable.c"],include_dirs=["MACS2/",numpy_get_include()]),
]
setup(name="MACS",
version="2.0.10",
description="Model Based Analysis for ChIP-Seq data",
author='Tao Liu',
author_email='[email protected]',
url='http://github.com/taoliu/MACS/',
package_dir={'MACS2' : 'MACS2'},
packages=['MACS2', 'MACS2.IO', 'MACS2.data'],
package_data={'MACS2': ['data/*.dat']},
scripts=['bin/macs2',
'bin/MLEPostPoisRatios',
'bin/MCMCPostPoisRatios',
],
classifiers=[
'Development Status :: 4 - experimental',
'Environment :: Console',
'Intended Audience :: Developers',
'License :: OSI Approved :: Artistic License',
'Operating System :: MacOS :: MacOS X',
'Operating System :: Microsoft :: Windows',
'Operating System :: POSIX',
'Programming Language :: Python',
],
cmdclass = command_classes,
ext_modules = ext_modules
)示例7: GenExtension
def GenExtension(name, pkg, ):
pyx_src = name.replace('.', '/')
pyx_src = pyx_src + '.pyx'
ext_src = pyx_src
if pkg.found:
return Extension(name, [ext_src], extra_compile_args = pkg.compile_args, include_dirs = pkg.include_dirs + [numpy_get_include()], library_dirs = pkg.library_dirs, libraries = pkg.libraries)
else:
print("Failed to find {}".format(pkg.name))
return None示例8: Copyright
## Copyright (C) 2012 Max-Planck-Society
## Author: Marco Selig
from distutils.core import setup
from distutils.extension import Extension as extension
from Cython.Distutils import build_ext
from numpy import get_include as numpy_get_include
srcs = ["wrapper.pyx",
"interfacer.cpp"]
libs = ["sharp",
"fftpack",
'c_utils']
idirs = [numpy_get_include(),
"../libsharp-code/c_utils",
"../libsharp-code/libfftpack",
"../libsharp-code/libsharp"]
ldirs = ["../libsharp-code/auto/lib"]
exmod = [extension("libsharp_wrapper_gl",
srcs,
language="c++",
include_dirs=idirs,
library_dirs=ldirs,
libraries=libs)]
setup(name="libsharp_wrapper_gl",
version="0.1",示例9: main
def main():
if float(sys.version[:3])<2.7 or float(sys.version[:3])>=2.8:
sys.stderr.write("CRITICAL: Python version must be 2.7!\n")
sys.exit(1)
# I intend to use -Ofast, however if gcc version < 4.6, this option is unavailable so...
extra_c_args = ["-w","-O3","-ffast-math"] # for C, -Ofast implies -O3 and -ffast-math
ext_modules = [Extension("MACS2.Prob", ["MACS2/Prob.c"], libraries=["m"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args ),
Extension("MACS2.IO.Parser",["MACS2/IO/Parser.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.Pileup", ["MACS2/Pileup.c","MACS2/cPosValCalculation.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args ),
Extension("MACS2.PeakModel", ["MACS2/PeakModel.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.PeakDetect", ["MACS2/PeakDetect.c"], extra_compile_args=extra_c_args),
Extension("MACS2.Signal", ["MACS2/Signal.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.IO.PeakIO", ["MACS2/IO/PeakIO.c"], extra_compile_args=extra_c_args),
Extension("MACS2.IO.BedGraphIO", ["MACS2/IO/BedGraphIO.c"], extra_compile_args=extra_c_args),
Extension("MACS2.IO.FixWidthTrack", ["MACS2/IO/FixWidthTrack.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.IO.PairedEndTrack", ["MACS2/IO/PairedEndTrack.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.IO.BedGraph", ["MACS2/IO/BedGraph.c"], libraries=["m"], extra_compile_args=extra_c_args),
Extension("MACS2.IO.ScoreTrack", ["MACS2/IO/ScoreTrack.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args ),
Extension("MACS2.IO.CallPeakUnit", ["MACS2/IO/CallPeakUnit.c"], include_dirs=numpy_include_dir, extra_compile_args=extra_c_args),
Extension("MACS2.hashtable", ["MACS2/hashtable.c"], include_dirs=["MACS2/",numpy_get_include()], extra_compile_args=extra_c_args),
Extension("MACS2.Statistics", ["MACS2/Statistics.c", "MACS2/cStatistics.c"], libraries=["m"], include_dirs=["MACS2/",numpy_get_include()], extra_compile_args=extra_c_args),
]
setup(name="MACS2",
version="2.1.1.20160226",
description="Model Based Analysis for ChIP-Seq data",
author='Tao Liu',
author_email='[email protected]',
url='http://github.com/taoliu/MACS/',
package_dir={'MACS2' : 'MACS2'},
packages=['MACS2', 'MACS2.IO'],#, 'MACS2.data'],
#package_data={'MACS2': ['data/*.dat']},
scripts=['bin/macs2',
],
classifiers=[
'Development Status :: 4 - Beta',
'Environment :: Console',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: BSD License',
'Operating System :: MacOS :: MacOS X',
'Operating System :: POSIX',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Programming Language :: Python',
],
install_requires=[
'numpy>=1.6',
#'scipy',
],
cmdclass = command_classes,
ext_modules = ext_modules
)示例10: type
extra_compile_args.append('-Wno-shift-negative-value')
extra_compile_args.append('-Wno-parentheses-equality')
extra_compile_args.append('-Wno-deprecated-declarations')
else:
# Remove the "-Wstrict-prototypes" compiler option that swig adds, which isn't valid for C++.
cfg_vars = sysconfig.get_config_vars()
for key, value in cfg_vars.items():
if type(value) == str:
cfg_vars[key] = value.replace("-Wstrict-prototypes", "")
extra_compile_args.append('-Wno-maybe-uninitialized')
# the libgip.so module containing all the C++ code
gip_module = Extension(
name=os.path.join("gippy", "libgip"),
sources=glob.glob('GIP/*.cpp'),
include_dirs=['GIP', numpy_get_include()] + gdal_config.include,
library_dirs=lib_dirs,
libraries=[
'pthread'
] + gdal_config.libs,
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args
)
# the swig .so modules containing the C++ code that wraps libgip.so
swig_modules = []
for n in ['gippy', 'algorithms']:
src = os.path.join('gippy', n + '.i')
cppsrc = os.path.join('gippy', n + '_wrap.cpp')
src = cppsrc if os.path.exists(cppsrc) else src
swig_modules.append(示例11:
from distutils.core import setup
from distutils.extension import Extension
from distutils.sysconfig import get_python_inc
from Cython.Distutils import build_ext
from numpy import get_include as numpy_get_include
ext_modules = [Extension("_regions", ["src/_regions.pyx"],
include_dirs = [numpy_get_include()])]
setup(
name = '_regions',
cmdclass = {'build_ext': build_ext},
ext_modules = ext_modules
)示例12: doall
from distutils.core import setup, Extension
try:
from numpy import get_include as numpy_get_include
numpy_includes=numpy_get_include()
del numpy_get_include
except:
print("falling back to hardcoded numpy header directory")
numpy_includes='/usr/lib/python3.2/site-packages/numpy/core/include'
try:
from distutils.command.build_py import build_py_2to3 as build_py
except ImportError:
from distutils.command.build_py import build_py
def doall():
setup(name='HRTime', version='1.0',
description = 'a package providing access to the high resolution timer',
ext_modules = [Extension('HRTime',
sources=['HRTime.c'],
)])
setup(name='rtsched', version='1.0',
description = 'a package providing (limited) real-time processing/priority functionality',
ext_modules = [Extension('rtsched',
sources=['rtsched/rtsched.c'],
)])
# these come from the SciPy cookbook:
# setup(name='rebin', version='1.0',
# description = 'a package providing the rebin "resampling function',
# py_modules=['rebin'], cmdclass={'build_py':build_py}, )