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Python datasets.fetch_haxby_simple函数代码示例

本文整理汇总了Python中nilearn.datasets.fetch_haxby_simple函数的典型用法代码示例。如果您正苦于以下问题:Python fetch_haxby_simple函数的具体用法?Python fetch_haxby_simple怎么用?Python fetch_haxby_simple使用的例子?那么恭喜您, 这里精选的函数代码示例或许可以为您提供帮助。


在下文中一共展示了fetch_haxby_simple函数的3个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的Python代码示例。

示例1: test_fetch_haxby_simple

def test_fetch_haxby_simple():
    local_url = "file://" + os.path.join(datadir, "pymvpa-exampledata.tar.bz2")
    haxby = datasets.fetch_haxby_simple(data_dir=tmpdir, url=local_url,
                                        verbose=0)
    datasetdir = os.path.join(tmpdir, 'haxby2001_simple', 'pymvpa-exampledata')
    for key, file in [
            ('session_target', 'attributes.txt'),
            ('func', 'bold.nii.gz'),
            ('mask', 'mask.nii.gz'),
            ('conditions_target', 'attributes_literal.txt')]:
        assert_equal(haxby[key], os.path.join(datasetdir, file))
        assert_true(os.path.exists(os.path.join(datasetdir, file)))
开发者ID:amadeuskanaan,项目名称:nilearn,代码行数:12,代码来源:test_datasets.py

示例2:

"""
The haxby dataset: different multi-class strategies
=======================================================

We compare one vs all and one vs one multi-class strategies: the overall
cross-validated accuracy and the confusion matrix.

"""
# Import matplotlib for plotting
from matplotlib import pyplot as plt

### Load Haxby dataset ########################################################
from nilearn import datasets
import numpy as np
dataset_files = datasets.fetch_haxby_simple()

# fmri_data and mask are copied to break any reference to the original object
y, session = np.loadtxt(dataset_files.session_target).astype("int").T
conditions = np.recfromtxt(dataset_files.conditions_target)['f0']

# Remove the rest condition, it is not very interesting
non_rest = conditions != 'rest'
conditions = conditions[non_rest]
y = y[non_rest]
session = session[non_rest]

# Get the labels of the numerical conditions represented by the vector y
unique_conditions, order = np.unique(conditions, return_index=True)
# Sort the conditions by the order of appearance
unique_conditions = unique_conditions[np.argsort(order)]
开发者ID:mekman,项目名称:nilearn,代码行数:30,代码来源:plot_haxby_multiclass.py

示例3: image

[2] Anderson, M. J. & Robinson, J. (2001).
    Permutation tests for linear models.
    Australian & New Zealand Journal of Statistics, 43(1), 75-88.
    (http://avesbiodiv.mncn.csic.es/estadistica/permut2.pdf)

"""
# Author: Virgile Fritsch, <[email protected]>, Feb. 2014
import numpy as np
from scipy import linalg
from nilearn import datasets
from nilearn.input_data import NiftiMasker
from nilearn.mass_univariate import permuted_ols

### Load Haxby dataset ########################################################
haxby_dataset = datasets.fetch_haxby_simple()

# print basic information on the dataset
print('Mask nifti image (3D) is located at: %s' % haxby_dataset.mask)
print('Functional nifti image (4D) is located at: %s' % haxby_dataset.func[0])

### Mask data #################################################################
mask_filename = haxby_dataset.mask
nifti_masker = NiftiMasker(
    mask_img=mask_filename,
    memory='nilearn_cache', memory_level=1)  # cache options
func_filename = haxby_dataset.func[0]
fmri_masked = nifti_masker.fit_transform(func_filename)

### Restrict to faces and houses ##############################################
conditions_encoded, sessions = np.loadtxt(
开发者ID:bcipolli,项目名称:nilearn,代码行数:30,代码来源:plot_haxby_mass_univariate.py


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