本文整理汇总了Python中ngi_pipeline.database.classes.CharonSession.projects_get_all方法的典型用法代码示例。如果您正苦于以下问题：Python CharonSession.projects_get_all方法的具体用法？Python CharonSession.projects_get_all怎么用？Python CharonSession.projects_get_all使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类ngi_pipeline.database.classes.CharonSession的用法示例。
在下文中一共展示了CharonSession.projects_get_all方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: main
# 需要导入模块: from ngi_pipeline.database.classes import CharonSession [as 别名]
# 或者: from ngi_pipeline.database.classes.CharonSession import projects_get_all [as 别名]
def main(demux_fcid_dir, restrict_to_projects=None, restrict_to_samples=None):
demux_fcid_dir = "/proj/a2014205/INBOX/140528_D00415_0049_BC423WACXX" # G.Grigelioniene_14_01
process_demultiplexed_flowcell(demux_fcid_dir, None, None)
time.sleep(60) #wait for 1 minutes
demux_fcid_dir = "/proj/a2014205/INBOX/140702_D00415_0052_AC41A2ANXX" # M.Kaller_14_06 sample P1171_102, P1171_104, P1171_106, P1171_108
process_demultiplexed_flowcell(demux_fcid_dir, None, None)
time.sleep(60) #wait for 1 minutes
demux_fcid_dir = "/proj/a2014205/INBOX/140905_D00415_0057_BC45KVANXX" # M.Kaller_14_06 sample P1171_102, P1171_104, P1171_106 ---- rerun
process_demultiplexed_flowcell(demux_fcid_dir, None, None)
time.sleep(60) #wait for 1 minutes
demux_fcid_dir = "/proj/a2014205/INBOX/140815_SN1025_0222_AC4HA6ACXX" # M.Kaller_14_05 sample P1170_101, P1170_103, P1170_105
process_demultiplexed_flowcell(demux_fcid_dir, None, None) # M.Kaller_14_08 sample P1272_101, P1272_104
time.sleep(60) #wait for 1 minutes
demux_fcid_dir = "/proj/a2014205/INBOX/140815_SN1025_0223_BC4HAPACXX" # M.Kaller_14_05 sample P1170_101, P1170_103, P1170_105
process_demultiplexed_flowcell(demux_fcid_dir, None, None) # M.Kaller_14_08 sample P1272_101, P1272_104
time.sleep(60) #wait for 1 minutes
demux_fcid_dir = "/proj/a2014205/INBOX/140919_SN1018_0203_BHA3THADXX" # M.Kaller_14_05 P1170_103, P1170_105 --- rerun
process_demultiplexed_flowcell(demux_fcid_dir, None, None)
time.sleep(60) #wait for 1 minutes
###UPPSALA
demux_fcid_dir = "/proj/a2014205/INBOX/140821_D00458_0029_AC45JGANXX" # uppsala run
process_demultiplexed_flowcell(demux_fcid_dir, None, None)
time.sleep(60) #wait for 1 minutes
demux_fcid_dir = "/proj/a2014205/INBOX/140917_D00458_0034_AC4FF3ANXX" # -- rerun
process_demultiplexed_flowcell(demux_fcid_dir, None, None)
time.sleep(60) #wait for 1 minutes
#and now a loop to update the DB
time.sleep(3800)
charon_session = CharonSession()
####charon_session.project_delete("ND-0522")
while True:
update_charon_with_local_jobs_status() ## this updated local_db and charon accordingly
# grab all projects from Charon
projects_dict = charon_session.projects_get_all()['projects']
for project_charon in projects_dict:
project_name = project_charon["name"]
project_dir = os.path.join("/proj/a2014205/nobackup/NGI/analysis_ready/DATA", project_name)
if os.path.isdir(project_dir):
projectObj = recreate_project_from_filesystem(project_dir, None)
launch_analysis_for_samples([projectObj])
time.sleep(3800)