本文整理汇总了Python中nexus.NexusReader.make_nexus方法的典型用法代码示例。如果您正苦于以下问题：Python NexusReader.make_nexus方法的具体用法？Python NexusReader.make_nexus怎么用？Python NexusReader.make_nexus使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类nexus.NexusReader的用法示例。
在下文中一共展示了NexusReader.make_nexus方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: Test_Binarise
# 需要导入模块: from nexus import NexusReader [as 别名]
# 或者: from nexus.NexusReader import make_nexus [as 别名]
class Test_Binarise(unittest.TestCase):
def setUp(self):
self.nex = NexusReader()
self.nex.read_string(
"""Begin data;
Dimensions ntax=3 nchar=2;
Format datatype=standard symbols="01" gap=-;
Charstatelabels
1 char1, 2 char2;
Matrix
Maori 14
Dutch 25
Latin 36
;""")
self.nex = binarise(self.nex)
def test_to_binary(self):
"""Test Nexus -> Binary: Two Character"""
expected = {
'char1_0': {"Maori": '1', "Dutch": "0", "Latin": "0"},
'char1_1': {"Maori": '0', "Dutch": "1", "Latin": "0"},
'char1_2': {"Maori": '0', "Dutch": "0", "Latin": "1"},
'char2_0': {"Maori": '1', "Dutch": "0", "Latin": "0"},
'char2_1': {"Maori": '0', "Dutch": "1", "Latin": "0"},
'char2_2': {"Maori": '0', "Dutch": "0", "Latin": "1"},
}
for char, data in expected.items():
for taxon, exp_value in data.items():
assert self.nex.data[char][taxon] == exp_value
def test_to_binary_nchar(self):
"""Test Nexus -> Binary: Number of Characters"""
assert len(self.nex.characters) == 6
def test_to_binary_symbollist(self):
"""Test Nexus -> Binary: Update Symbol List"""
# check symbol list was updated
assert len(self.nex.symbols) == 2
assert '1' in self.nex.symbols
assert '0' in self.nex.symbols
def test_to_binary_nexus(self):
"""Test Nexus -> Binary: Nexus"""
nexus = self.nex.make_nexus(interleave=False)
assert re.search("Dutch\s+010010", nexus)
assert re.search("Maori\s+100100", nexus)
assert re.search("Latin\s+001001", nexus)