Python Mapper.__init__方法代码示例

# 需要导入模块: from mvpa2.mappers.base import Mapper [as 别名]
# 或者: from mvpa2.mappers.base.Mapper import __init__ [as 别名]
    def __init__(self, selector=None, demean=True):
        """Initialize the ProjectionMapper

        Parameters
        ----------
        selector : None or list
          Which components (i.e. columns of the projection matrix)
          should be used for mapping. If `selector` is `None` all
          components are used. If a list is provided, all list
          elements are treated as component ids and the respective
          components are selected (all others are discarded).
        demean : bool
          Either data should be demeaned while computing
          projections and applied back while doing reverse()
        """
        Mapper.__init__(self)

        # by default we want to wipe the feature attributes out during mapping
        self._fa_filter = []

        self._selector = selector
        self._proj = None
        """Forward projection matrix."""
        self._recon = None
        """Reverse projection (reconstruction) matrix."""
        self._demean = demean
        """Flag whether to demean the to be projected data, prior to projection.
        """
        self._offset_in = None
        """Offset (most often just mean) in the input space"""
        self._offset_out = None
        """Offset (most often just mean) in the output space"""

# 需要导入模块: from mvpa2.mappers.base import Mapper [as 别名]
# 或者: from mvpa2.mappers.base.Mapper import __init__ [as 别名]
    def __init__(self, fx, train_as_1st=True, **kwargs):
        """
        Parameters
        ----------
        fx : callable
          Functor that is called with the two datasets upon forward-mapping.
        train_as_1st : bool
          If True, the training dataset is passed to the target callable as
          the first argument and the other dataset as the second argument.
          If False, it is vice versa.

        Examples
        --------
        >>> from mvpa2.mappers.fxy import FxyMapper
        >>> from mvpa2.datasets import Dataset
        >>> callable = lambda x,y: len(x) > len(y)
        >>> ds1 = Dataset(range(5))
        >>> ds2 = Dataset(range(3))
        >>> fxy = FxyMapper(callable)
        >>> fxy.train(ds1)
        >>> fxy(ds2).item()
        True
        >>> fxy = FxyMapper(callable, train_as_1st=False)
        >>> fxy.train(ds1)
        >>> fxy(ds2).item()
        False
        """
        Mapper.__init__(self, **kwargs)
        self._fx = fx
        self._train_as_1st = train_as_1st
        self._ds_train = None

# 需要导入模块: from mvpa2.mappers.base import Mapper [as 别名]
# 或者: from mvpa2.mappers.base.Mapper import __init__ [as 别名]
    def __init__(self, chunks_attr=None, k=8, init='k-means++', n_init=10, **kwargs):
        """
	parameters
        __________
        chunks_attr : str or None
          If provided, it specifies the name of a samples attribute in the
          training data, unique values of which will be used to identify chunks of
          samples, and to perform individual clustering within them.
        k : int or ndarray
          The number of clusters to form as well as the number of centroids to
          generate. If init initialization string is matrix, or if a ndarray
          is given instead, it is interpreted as initial cluster to use instead
        init : {k-means++, random, points, matrix}
          Method for initialization, defaults to k-means++:k-means++ :
          selects initial cluster centers for k-mean clustering in a smart way
	  to speed up convergence. See section Notes in k_init for more details.
          random: generate k centroids from a Gaussian with mean and variance 
	  estimated from the data.points: choose k observations (rows) at 
	  random from data for the initial centroids.matrix: interpret the k 
	  parameter as a k by M (or length k array for one-dimensional data) 
	  array of initial centroids.
        n_init : int
	  Number of iterations of the k-means algrithm to run. Note that this 
	  differs in meaning from the iters parameter to the kmeans function.
        """
        Mapper.__init__(self, **kwargs)

        self.__chunks_attr = chunks_attr
        self.__k = k
        self.__init = init
        self.__n_init = n_init

# 需要导入模块: from mvpa2.mappers.base import Mapper [as 别名]
# 或者: from mvpa2.mappers.base.Mapper import __init__ [as 别名]
    def __init__(self, params=None, param_est=None, chunks_attr="chunks", dtype="float64", **kwargs):
        """
        Parameters
        ----------
        params : None or tuple(mean, std) or dict
          Fixed Z-Scoring parameters (mean, standard deviation). If provided,
          no parameters are estimated from the data. It is possible to specify
          individual parameters for each chunk by passing a dictionary with the
          chunk ids as keys and the parameter tuples as values. If None,
          parameters will be estimated from the training data.
        param_est : None or tuple(attrname, attrvalues)
          Limits the choice of samples used for automatic parameter estimation
          to a specific subset identified by a set of a given sample attribute
          values.  The tuple should have the name of that sample
          attribute as the first element, and a sequence of attribute values
          as the second element. If None, all samples will be used for parameter
          estimation.
        chunks_attr : str or None
          If provided, it specifies the name of a samples attribute in the
          training data, unique values of which will be used to identify chunks of
          samples, and to perform individual Z-scoring within them.
        dtype : Numpy dtype, optional
          Target dtype that is used for upcasting, in case integer data is to be
          Z-scored.
        """
        Mapper.__init__(self, **kwargs)

        self.__chunks_attr = chunks_attr
        self.__params = params
        self.__param_est = param_est
        self.__params_dict = None
        self.__dtype = dtype

        # secret switch to perform in-place z-scoring
        self._secret_inplace_zscore = False

# 需要导入模块: from mvpa2.mappers.base import Mapper [as 别名]
# 或者: from mvpa2.mappers.base.Mapper import __init__ [as 别名]
    def __init__(self, polyord=1, chunks_attr=None, opt_regs=None, **kwargs):
        """
        Parameters
        ----------
        space : str or None
          If not None, a samples attribute of the same name is added to the
          mapped dataset that stores the coordinates of each sample in the
          space that is spanned by the polynomials. If an attribute of that
          name is already present in the input dataset its values are interpreted
          as sample coordinates in the space that should be spanned by the
          polynomials.
        """
        # keep param init for historical reasons
        self.params.chunks_attr = chunks_attr
        self.params.polyord = polyord
        self.params.opt_regs = opt_regs

        # things that come from train()
        self._polycoords = None
        self._regs = None

        # secret switch to perform in-place detrending
        self._secret_inplace_detrend = False

        # need to init last to prevent base class puking
        Mapper.__init__(self, **kwargs)

# 需要导入模块: from mvpa2.mappers.base import Mapper [as 别名]
# 或者: from mvpa2.mappers.base.Mapper import __init__ [as 别名]
    def __init__(self, num, window=None, chunks_attr=None, position_attr=None,
                 attr_strategy='remove', **kwargs):
        """
        Parameters
        ----------
        num : int
          Number of output samples. If operating on chunks, this is the number
          of samples per chunk.
        window : str or float or tuple
          Passed to scipy.signal.resample
        chunks_attr : str or None
          If not None, this samples attribute defines chunks that will be
          resampled individually.
        position_attr : str
          A samples attribute with positional information that is passed
          to scipy.signal.resample. If not None, the output dataset will
          also contain a sample attribute of this name, with updated
          positional information (this is, however, only meaningful for
          equally spaced samples).
        attr_strategy : {'remove', 'sample', 'resample'}
          Strategy to process sample attributes during mapping. 'remove' will
          cause all sample attributes to be removed. 'sample' will pick orginal
          attribute values matching the new resampling frequency (e.g. every
          10th), and 'resample' will also apply the actual data resampling
          procedure to the attributes as well (which might not be possible, e.g.
          for literal attributes).
        """
        Mapper.__init__(self, **kwargs)

        self.__num = num
        self.__window_args = window
        self.__chunks_attr = chunks_attr
        self.__position_attr = position_attr
        self.__attr_strategy = attr_strategy

# 需要导入模块: from mvpa2.mappers.base import Mapper [as 别名]
# 或者: from mvpa2.mappers.base.Mapper import __init__ [as 别名]
    def __init__(self, node, nodeargs=None, **kwargs):
        """
        Parameters
        ----------
        node : mdp.Node instance
          This node instance is taken as the pristine source of which a
          copy is made for actual processing upon each training attempt.
        nodeargs : dict
          Dictionary for additional arguments for all calls to the MDP
          node. The dictionary key's meaning is as follows:

          'train'
            Arguments for calls to `Node.train()`
          'stoptrain'
            Arguments for calls to `Node.stop_training()`
          'exec'
            Arguments for calls to `Node.execute()`
          'inv'
            Arguments for calls to `Node.inverse()`

          The value for each item is always a 2-tuple, consisting of a
          tuple (for the arguments), and a dictionary (for keyword
          arguments), i.e.  ((), {}). Both, tuple and dictionary have to be
          provided even if they are empty.
        inspace : see base class
        """
        # TODO: starting from MDP2.5 this check should become:
        # TODO:   if node.has_multiple_training_phases():      
        if not len(node._train_seq) == 1:
            raise ValueError("MDPNodeMapper does not support MDP nodes with "
                             "multiple training phases.")
        Mapper.__init__(self, **kwargs)
        self.__pristine_node = None
        self.node = node
        self.nodeargs = nodeargs

# 需要导入模块: from mvpa2.mappers.base import Mapper [as 别名]
# 或者: from mvpa2.mappers.base.Mapper import __init__ [as 别名]
    def __init__(self, axis, fx, fxargs=None, uattrs=None, attrfx="merge"):
        """
        Parameters
        ----------
        axis : {'samples', 'features'}
        fx : callable
        fxargs : tuple
        uattrs : list
          List of attribute names to consider. All possible combinations
          of unique elements of these attributes are used to determine the
          sample groups to operate on.
        attrfx : callable
          Functor that is called with each sample attribute elements matching
          the respective samples group. By default the unique value is
          determined. If the content of the attribute is not uniform for a
          samples group a unique string representation is created.
          If `None`, attributes are not altered.
        """
        Mapper.__init__(self)

        if not axis in ["samples", "features"]:
            raise ValueError("%s `axis` arguments can only be 'samples' or " "'features' (got: '%s')." % repr(axis))
        self.__axis = axis
        self.__uattrs = uattrs
        self.__fx = fx
        if not fxargs is None:
            self.__fxargs = fxargs
        else:
            self.__fxargs = ()
        if attrfx == "merge":
            self.__attrfx = _uniquemerge2literal
        else:
            self.__attrfx = attrfx

# 需要导入模块: from mvpa2.mappers.base import Mapper [as 别名]
# 或者: from mvpa2.mappers.base.Mapper import __init__ [as 别名]
    def __init__(self, demean=True):
        """Initialize the ProjectionMapper

        Parameters
        ----------
        demean : bool
          Either data should be demeaned while computing
          projections and applied back while doing reverse()
        """
        Mapper.__init__(self)

        # by default we want to wipe the feature attributes out during mapping
        self._fa_filter = []

        self._proj = None
        """Forward projection matrix."""
        self._recon = None
        """Reverse projection (reconstruction) matrix."""
        self._demean = demean
        """Flag whether to demean the to be projected data, prior to projection.
        """
        self._offset_in = None
        """Offset (most often just mean) in the input space"""
        self._offset_out = None
        """Offset (most often just mean) in the output space"""

# 需要导入模块: from mvpa2.mappers.base import Mapper [as 别名]
# 或者: from mvpa2.mappers.base.Mapper import __init__ [as 别名]
    def __init__(self, chunks_attr=None, k=8, mode="arpack", random_state=None, n_init=10, **kwargs):
        """
	parameters
        __________
        chunks_attr : str or None
          If provided, it specifies the name of a samples attribute in the
          training data, unique values of which will be used to identify chunks of
          samples, and to perform individual clustering within them.
        k : int or ndarray
          The number of clusters to form as well as the number of centroids to
          generate. If init initialization string is matrix, or if a ndarray
          is given instead, it is interpreted as initial cluster to use instead
        mode : {None, 'arpack' or 'amg'}
          The eigenvalue decomposition strategy to use. AMG requires pyamg
          to be installed. It can be faster on very large, sparse problems,
          but may also lead to instabilities.
	random_state: int seed, RandomState instance, or None (default)
          A pseudo random number generator used for the initialization
          of the lobpcg eigen vectors decomposition when mode == 'amg'
          and by the K-Means initialization.
        n_init : int
	  Number of iterations of the k-means algrithm to run. Note that this 
	  differs in meaning from the iters parameter to the kmeans function.
        """
        Mapper.__init__(self, **kwargs)

        self.__chunks_attr = chunks_attr
        self.__k = k
        self.__mode = mode
        self.__random_state = random_state
        self.__n_init = n_init

# 需要导入模块: from mvpa2.mappers.base import Mapper [as 别名]
# 或者: from mvpa2.mappers.base.Mapper import __init__ [as 别名]
    def __init__(self, kshape, niter, learning_rate=0.005,
                 iradius=None, distance_metric=None, initialization_func=None):
        """
        Parameters
        ----------
        kshape : (int, int)
            Shape of the internal Kohonen layer. Currently, only 2D Kohonen
            layers are supported, although the length of an axis might be set
            to 1.
        niter : int
            Number of iteration during network training.
        learning_rate : float
            Initial learning rate, which will continuously decreased during
            network training.
        iradius : float or None
            Initial radius of the Gaussian neighborhood kernel radius, which
            will continuously decreased during network training. If `None`
            (default) the radius is set equal to the longest edge of the
            Kohonen layer.
        distance_metric: callable or None
            Kernel distance metric between elements in Kohonen layer. If None
            then Euclidean distance is used. Otherwise it should be a 
            callable that accepts two input arguments x and y and returns
            the distance d through d=distance_metric(x,y)
        initialization_func: callable or None
            Initialization function to set self._K, that should take one 
            argument with training samples and return an numpy array. If None,
            then values in the returned array are taken from a standard normal 
            distribution.  
        """
        # init base class
        Mapper.__init__(self)

        self.kshape = np.array(kshape, dtype='int')

        if iradius is None:
            self.radius = self.kshape.max()
        else:
            self.radius = iradius

        if distance_metric is None:
            self.distance_metric = lambda x, y: (x ** 2 + y ** 2) ** 0.5
        else:
            self.distance_metric = distance_metric

        # learning rate
        self.lrate = learning_rate

        # number of training iterations
        self.niter = niter

        # precompute whatever can be done
        # scalar for decay of learning rate and radius across all iterations
        self.iter_scale = self.niter / np.log(self.radius)

        # the internal kohonen layer
        self._K = None
        self._dqd = None
        self._initialization_func = initialization_func

# 需要导入模块: from mvpa2.mappers.base import Mapper [as 别名]
# 或者: from mvpa2.mappers.base.Mapper import __init__ [as 别名]
 def __init__(self, slicearg, **kwargs):
     """
     Parameters
     ----------
     slicearg
       Argument for slicing
     """
     Mapper.__init__(self, **kwargs)
     self._safe_assign_slicearg(slicearg)

# 需要导入模块: from mvpa2.mappers.base import Mapper [as 别名]
# 或者: from mvpa2.mappers.base.Mapper import __init__ [as 别名]
    def __init__(self, distmask=None, **kwargs):
        """
	    parameters
        ----------
        distmask :  ndarray-like matrix or sparse matrix, or a dataset.
            The distmask of voxels to present their neighbors. 
            Usually we do not set it.
        """
        Mapper.__init__(self, **kwargs)

        self.__distmask = distmask

# 需要导入模块: from mvpa2.mappers.base import Mapper [as 别名]
# 或者: from mvpa2.mappers.base.Mapper import __init__ [as 别名]
    def __init__(self,neighbor_shape, outsparse=True, **kwargs):
        """
	    Parameters
        ----------
        neighborhood :  .
        outsparse: bool
            whether to output sparse matrix. 
        """
        Mapper.__init__(self, **kwargs)
        
        self.__outsparse = outsparse
        self.__neighbor_shape = neighbor_shape

# 需要导入模块: from mvpa2.mappers.base import Mapper [as 别名]
# 或者: from mvpa2.mappers.base.Mapper import __init__ [as 别名]
 def __init__(self, pos, **kwargs):
     """
     Parameters
     ----------
     pos : int
         Axis index to which the new axis is prepended. Negative indices are
         supported as well, but the new axis will be placed behind the given
         index. For example, a position of ``-1`` will cause an axis to be
         added behind the last axis. If ``pos`` is larger than the number of
         existing axes additional new axes will be created match the value of
         ``pos``.
     """
     Mapper.__init__(self, **kwargs)
     self._pos = pos