Python MozaikParametrized.idd方法代码示例

# 需要导入模块: from mozaik.tools.mozaik_parametrized import MozaikParametrized [as 别名]
# 或者: from mozaik.tools.mozaik_parametrized.MozaikParametrized import idd [as 别名]
    def  __init__(self, datastore,single_trial=False, **params):
        self.single_trial = single_trial
        PerDSVPlot.__init__(self, datastore, **params)
        ss = self._get_stimulus_ids()
        assert ss != [], "Error, empty datastore!"
        if self.title_style == "Clever":
            stimulus = MozaikParametrized.idd(ss[0])
            for s in ss:
                s = MozaikParametrized.idd(s)
                if s.name != stimulus.name:
                    logger.warning('Datastore does not contain same type of stimuli: changing title_style from Clever to Standard')
                    self.title_style = "Standard"
                    break

        # lets find parameter indexes that vary if we need 'Clever' title style
        if self.title_style == "Clever":
            self.varied = varying_parameters([MozaikParametrized.idd(s) for s in ss])
            
            if not self.single_trial:
                self.varied = [x for x in self.varied if x != 'trial']
            
            
        if self.title_style == "Standard":
            self.extra_space_top = 0.07
        if self.title_style == "Clever":
            self.extra_space_top = len(self.varied)*0.005

# 需要导入模块: from mozaik.tools.mozaik_parametrized import MozaikParametrized [as 别名]
# 或者: from mozaik.tools.mozaik_parametrized.MozaikParametrized import idd [as 别名]
    def _ploter(self, idx, gs):
        pair = self.pairs[idx]
        # Let's figure out the varying parameters
        p1 = varying_parameters(pair)
        if pair[0].stimulus_id == None or pair[1].stimulus_id == None:
            p2 = []
        elif MozaikParametrized.idd(pair[0].stimulus_id).name != MozaikParametrized.idd(pair[1].stimulus_id).name:
            p2 = ['name']
        else:
            p2 = varying_parameters([MozaikParametrized.idd(p.stimulus_id) for p in pair])
        p1 = [x for x in p1 if ((x != 'value_name') and (x != 'stimulus_id'))]

        x_label = pair[0].value_name + '(' + pair[0].value_units.dimensionality.latex + ')'
        y_label = pair[1].value_name + '(' + pair[1].value_units.dimensionality.latex + ')'

        for p in p1:
            x_label += '\n' + str(p) + " = " + str(getattr(pair[0],p))
            y_label += '\n' + str(p) + " = " + str(getattr(pair[1],p))
        
        for p in p2:
            x_label += '\n' + str(p) + " = " + str(getattr(MozaikParametrized.idd(pair[0].stimulus_id),p))
            y_label += '\n' + str(p) + " = " + str(getattr(MozaikParametrized.idd(pair[1].stimulus_id),p))
        
        params = {}
        params["x_label"] = x_label
        params["y_label"] = y_label
        params["title"] = self.sheets[idx]
        if pair[0].value_units != pair[1].value_units or pair[1].value_units == pq.dimensionless:
           params["equal_aspect_ratio"] = False
        
        ids = list(set(pair[0].ids) & set(pair[1].ids))
        return [("ScatterPlot",ScatterPlot(pair[0].get_value_by_id(ids), pair[1].get_value_by_id(ids)),gs,params)]

# 需要导入模块: from mozaik.tools.mozaik_parametrized import MozaikParametrized [as 别名]
# 或者: from mozaik.tools.mozaik_parametrized.MozaikParametrized import idd [as 别名]
 def perform_analysis(self):
       dsv1 = queries.param_filter_query(self.datastore,st_name='FullfieldDriftingSinusoidalGrating')
       for sheet in dsv1.sheets():
           dsv = queries.param_filter_query(dsv1, sheet_name=sheet)
           segs1, stids = colapse(dsv.get_segments(),dsv.get_stimuli(),parameter_list=['trial'],allow_non_identical_objects=True)
           for segs,st in zip(segs1, stids):
               first_analog_signal = segs[0].get_esyn(segs[0].get_stored_esyn_ids()[0])
               duration = first_analog_signal.t_stop - first_analog_signal.t_start
               frequency = MozaikParametrized.idd(st).temporal_frequency * MozaikParametrized.idd(st).params()['temporal_frequency'].units
               period = 1/frequency
               period = period.rescale(first_analog_signal.t_start.units)
               cycles = duration / period
               first_har = round(cycles)
               e_f0 = [abs(numpy.fft.fft(numpy.mean([seg.get_esyn(idd) for seg in segs],axis=0).flatten())[0]/len(segs[0].get_esyn(idd))) for idd in segs[0].get_stored_esyn_ids()]
               i_f0 = [abs(numpy.fft.fft(numpy.mean([seg.get_isyn(idd) for seg in segs],axis=0).flatten())[0]/len(segs[0].get_esyn(idd))) for idd in segs[0].get_stored_isyn_ids()]
               v_f0 = [abs(numpy.fft.fft(numpy.mean([seg.get_vm(idd) for seg in segs],axis=0).flatten())[0]/len(segs[0].get_esyn(idd))) for idd in segs[0].get_stored_vm_ids()]
               e_f1 = [2*abs(numpy.fft.fft(numpy.mean([seg.get_esyn(idd) for seg in segs],axis=0).flatten()/len(segs[0].get_esyn(idd)))[first_har]) for idd in segs[0].get_stored_esyn_ids()]
               i_f1 = [2*abs(numpy.fft.fft(numpy.mean([seg.get_isyn(idd) for seg in segs],axis=0).flatten()/len(segs[0].get_esyn(idd)))[first_har]) for idd in segs[0].get_stored_isyn_ids()]
               v_f1 = [2*abs(numpy.fft.fft(numpy.mean([seg.get_vm(idd) for seg in segs],axis=0).flatten()/len(segs[0].get_esyn(idd)))[first_har]) for idd in segs[0].get_stored_vm_ids()]
               
               self.datastore.full_datastore.add_analysis_result(PerNeuronValue(e_f0,segs[0].get_stored_esyn_ids(),first_analog_signal.units,value_name = 'F0_Exc_Cond',sheet_name=sheet,tags=self.tags,period=None,analysis_algorithm=self.__class__.__name__,stimulus_id=str(st)))        
               self.datastore.full_datastore.add_analysis_result(PerNeuronValue(i_f0,segs[0].get_stored_isyn_ids(),first_analog_signal.units,value_name = 'F0_Inh_Cond',sheet_name=sheet,tags=self.tags,period=None,analysis_algorithm=self.__class__.__name__,stimulus_id=str(st)))        
               self.datastore.full_datastore.add_analysis_result(PerNeuronValue(v_f0,segs[0].get_stored_vm_ids(),first_analog_signal.units,value_name = 'F0_Vm',sheet_name=sheet,tags=self.tags,period=None,analysis_algorithm=self.__class__.__name__,stimulus_id=str(st)))        
               self.datastore.full_datastore.add_analysis_result(PerNeuronValue(e_f1,segs[0].get_stored_esyn_ids(),first_analog_signal.units,value_name = 'F1_Exc_Cond',sheet_name=sheet,tags=self.tags,period=None,analysis_algorithm=self.__class__.__name__,stimulus_id=str(st)))        
               self.datastore.full_datastore.add_analysis_result(PerNeuronValue(i_f1,segs[0].get_stored_isyn_ids(),first_analog_signal.units,value_name = 'F1_Inh_Cond',sheet_name=sheet,tags=self.tags,period=None,analysis_algorithm=self.__class__.__name__,stimulus_id=str(st)))        
               self.datastore.full_datastore.add_analysis_result(PerNeuronValue(v_f1,segs[0].get_stored_vm_ids(),first_analog_signal.units,value_name = 'F1_Vm',sheet_name=sheet,tags=self.tags,period=None,analysis_algorithm=self.__class__.__name__,stimulus_id=str(st)))        

# 需要导入模块: from mozaik.tools.mozaik_parametrized import MozaikParametrized [as 别名]
# 或者: from mozaik.tools.mozaik_parametrized.MozaikParametrized import idd [as 别名]
 def perform_analysis(self):
           dsv = queries.param_filter_query(self.datastore,identifier='PerNeuronValue',sheet_name=self.parameters.sheet_name,st_name='DriftingSinusoidalGratingCenterSurroundStimulus')
           
           if len(dsv.get_analysis_result()) == 0: return
           assert queries.ads_with_equal_stimulus_type(dsv)
           assert queries.equal_ads(dsv,except_params=['stimulus_id'])
           self.pnvs = dsv.get_analysis_result()
           
           # get stimuli
           self.st = [MozaikParametrized.idd(s.stimulus_id) for s in self.pnvs]
           
           
           # transform the pnvs into a dictionary of tuning curves according along the 'surround_orientation' parameter
           # also make sure they are ordered according to the first pnv's idds 
           
           self.tc_dict = colapse_to_dictionary([z.get_value_by_id(self.parameters.neurons) for z in self.pnvs],self.st,"surround_orientation")
           for k in self.tc_dict.keys():
                   sis = []
                   surround_tuning=[]
                   
                   # we will do the calculation neuron by neuron
                   for i in xrange(0,len(self.parameters.neurons)):
                       
                       ors = self.tc_dict[k][0]
                       values = numpy.array([a[i] for a in self.tc_dict[k][1]])
                       d={}
                       for o,v in zip(ors,values):
                           d[o] = v
                       sis.append(d[0] / d[numpy.pi/2])
                       
                       
                   self.datastore.full_datastore.add_analysis_result(PerNeuronValue(sis,self.parameters.neurons,None,value_name = 'Suppression index of ' + self.pnvs[0].value_name ,sheet_name=self.parameters.sheet_name,tags=self.tags,period=None,analysis_algorithm=self.__class__.__name__,stimulus_id=str(k)))

# 需要导入模块: from mozaik.tools.mozaik_parametrized import MozaikParametrized [as 别名]
# 或者: from mozaik.tools.mozaik_parametrized.MozaikParametrized import idd [as 别名]
def ads_with_equal_stimulus_type(dsv, allow_None=False):
    """
    This functions tests whether DSV contains only ADS associated
    with the same stimulus type.
    
    Parameters
    ----------
    not_None : bool
             If true it will not allow ADS that are not associated with stimulus
    """
    if allow_None:
        return matching_parametrized_object_params([MozaikParametrized.idd(ads.stimulus_id) for ads in dsv.analysis_results if ads.stimulus_id != None],params=['name'])
    else:
        if len([0 for ads in dsv.analysis_results if ads.stimulus_id == None]) > 0:
           return False
        return matching_parametrized_object_params([MozaikParametrized.idd(ads.stimulus_id) for ads in dsv.analysis_results],params=['name'])    

# 需要导入模块: from mozaik.tools.mozaik_parametrized import MozaikParametrized [as 别名]
# 或者: from mozaik.tools.mozaik_parametrized.MozaikParametrized import idd [as 别名]
 def __init__(self, datastore, parameters, plot_file_name=None,fig_param=None):
     Plotting.__init__(self, datastore, parameters, plot_file_name, fig_param)
     
     self.st = []
     self.tc_dict = []
     self.pnvs = []
     self.max_mean_response_indexes = []
     assert queries.ads_with_equal_stimulus_type(datastore)
     assert len(self.parameters.neurons) > 0 , "ERROR, empty list of neurons specified"
     dsvs = queries.partition_analysis_results_by_parameters_query(self.datastore,parameter_list=['value_name'],excpt=True)
     for dsv in dsvs:
         dsv = queries.param_filter_query(dsv,identifier='PerNeuronValue',sheet_name=self.parameters.sheet_name)
         assert matching_parametrized_object_params(dsv.get_analysis_result(), params=['value_name'])
         self.pnvs.append(dsv.get_analysis_result())
         # get stimuli
         st = [MozaikParametrized.idd(s.stimulus_id) for s in self.pnvs[-1]]
         self.st.append(st)
         # transform the pnvs into a dictionary of tuning curves along the parameter_name
         # also make sure the values are ordered according to ids in the first pnv
         dic = colapse_to_dictionary([z.get_value_by_id(self.parameters.neurons) for z in self.pnvs[-1]],st,self.parameters.parameter_name)
         #sort the entries in dict according to the parameter parameter_name values 
         for k in  dic:
             (b, a) = dic[k]
             par, val = zip(
                          *sorted(
                             zip(b,
                                 numpy.array(a))))
             dic[k] = (par,numpy.array(val))
         self.tc_dict.append(dic)
         if self.parameters.centered:
            self.max_mean_response_indexes.append(numpy.argmax(sum([a[1] for a in dic.values()]),axis=0))

# 需要导入模块: from mozaik.tools.mozaik_parametrized import MozaikParametrized [as 别名]
# 或者: from mozaik.tools.mozaik_parametrized.MozaikParametrized import idd [as 别名]
def save_data(dirname,dsv,name):

    try:
        os.mkdir(dirname)
    except:
        'all good'
        
    for neuron_id in analog_ids:
        mat_vm = []
        mat_exc = []
        mat_inh = []
        for seg in dsv.get_segments():
            sid = MozaikParametrized.idd(seg.annotations['stimulus'])
            a = seg.get_vm(neuron_id).magnitude
            a= numpy.insert(a,0,sid.trial)
            a= numpy.insert(a,0,sid.y)
            mat_vm.append(a)
            
            a = seg.get_esyn(neuron_id).magnitude
            a= numpy.insert(a,0,sid.trial)
            a= numpy.insert(a,0,sid.y)
            mat_exc.append(a)

            a = seg.get_isyn(neuron_id).magnitude
            a= numpy.insert(a,0,sid.trial)
            a= numpy.insert(a,0,sid.y)
            mat_inh.append(a)

            
        numpy.savetxt(dirname+'/'+'VM_' + name+str(neuron_id)+'.csv',numpy.array(mat_vm))
        numpy.savetxt(dirname+'/'+'ExcC' + name+str(neuron_id)+'.csv',numpy.array(mat_exc))
        numpy.savetxt(dirname+'/'+'InhC' + name+str(neuron_id)+'.csv',numpy.array(mat_inh))

# 需要导入模块: from mozaik.tools.mozaik_parametrized import MozaikParametrized [as 别名]
# 或者: from mozaik.tools.mozaik_parametrized.MozaikParametrized import idd [as 别名]
def ads_with_equal_stimuli(dsv,params=None,except_params=None):
    """
    This functions returns true if DSV contains only ADS associated with stimuli 
    of the same kind and with the same values for parameters supplied in *params* or 
    with the exception of parameters listed in *except_params*. 
    Otherwise False.
    """
    return matching_parametrized_object_params([MozaikParametrized.idd(ads.stimulus_id) for ads in dsv.analysis_results],params=params,except_params=except_params)

# 需要导入模块: from mozaik.tools.mozaik_parametrized import MozaikParametrized [as 别名]
# 或者: from mozaik.tools.mozaik_parametrized.MozaikParametrized import idd [as 别名]
    def print_content(self, full_recordings=False, full_ADS=False):
        """
        Prints the content of the data store (specifically the list of recordings and ADSs in the DSV).
        
        If the 
        
        Parameters
        ----------
            full_recordings : bool (optional)
                            If True each contained recording will be printed.
                            Otherwise only the overview of the recordings based on stimulus type will be shown.
                            
            full_ADS : bool (optional)
                     If True each contained ADS will be printed (for each this will print the set of their mozaik parameters together with their values).
                     Otherwise only the overview of the ADSs based on their identifier will be shown.
        """
        logger.info("DSV info:")
        logger.info("   Number of recordings: " + str(len(self.block.segments)))
        d = {}
        for st in [s.annotations['stimulus'] for s in self.block.segments]:
            d[MozaikParametrized.idd(st).name] = d.get(MozaikParametrized.idd(st).name, 0) + 1

        for k in d.keys():
            logger.info("     " + str(k) + " : " + str(d[k]))

        logger.info("   Number of ADS: " + str(len(self.analysis_results)))
        d = {}
        for ads in self.analysis_results:
            d[ads.identifier] = d.get(ads.identifier, 0) + 1

        for k in d.keys():
            logger.info("     " + str(k) + " : " + str(d[k]))

        if full_recordings:
            logger.info('RECORDING RESULTS')
            for s in [s.annotations['stimulus'] for s in self.block.segments]:
                logger.info(str(s))

        if full_ADS:
            logger.info('ANALYSIS RESULTS')
            for a in self.analysis_results:
                logger.info(str(a))

# 需要导入模块: from mozaik.tools.mozaik_parametrized import MozaikParametrized [as 别名]
# 或者: from mozaik.tools.mozaik_parametrized.MozaikParametrized import idd [as 别名]
def perform_analysis_and_visualization(data_store):
    analog_ids = param_filter_query(data_store,sheet_name="V1_Exc_L4").get_segments()[0].get_stored_esyn_ids()
    analog_ids_inh = param_filter_query(data_store,sheet_name="V1_Inh_L4").get_segments()[0].get_stored_esyn_ids()
    spike_ids = param_filter_query(data_store,sheet_name="V1_Exc_L4").get_segments()[0].get_stored_spike_train_ids()
    
    number_of_cells = len(analog_ids)
    numberOfCells_str = str(number_of_cells)
    print 'NUMBER OF CELLS' + numberOfCells_str
    stimuli_list = list(('SparseNoise', 'DenseNoise'))
    #stimuli_list = ['SparseNoise']
    save_to = './Data/'
    
    print stimuli_list
    for stimuli_type in stimuli_list: 
        print 'Getting voltage and images for ' + stimuli_type
        
        # Saving parameters 
        format = '.pickle'
        quality = '_15000_21_' # This is the number of images followed by the interval that they take in ms 
        
        # Load the segments 
        dsv = queries.param_filter_query(data_store, sheet_name="V1_Exc_L4",st_name=stimuli_type)
        segments = dsv.get_segments()
        stimuli = [MozaikParametrized.idd(s) for s in dsv.get_stimuli()]
        # Take the seeds 
        seeds = [s.experiment_seed for s in stimuli]
        
        print seeds,segments,stimuli 
               
        # Sort them based on their seeds 
        seeds,segments,stimuli = zip(*sorted(zip(seeds,segments,stimuli))) 
        segment_length = segments[0].get_spiketrain(spike_ids[0]).t_stop     
        
        # Values to obtain 
        spikes = [[] for i in segments[0].get_spiketrain(spike_ids)]    
        images = []
        
        ## Extract images 
        print 'Extracting and processing images'
        for i, seg in enumerate(segments):
            """
            First we take out the stimuli and make them as small as we can First we take out the stimuli and make them 
            as small as we can than one pixel assigned to each value of luminance. In order to do so, we first call the class
            And re-adjust is parameter st.density = st.grid_size. After that we successively call the class to extract the images
            frames  
            """
                        
            # First we take the class 
            st = MozaikParametrized.idd_to_instance(stimuli[i])
            st.size_x = 1.0
            st.size_y = 1.0 
            st.density = st.grid_size
            
            fr = st.frames()          
            
            # First we call as many frames as many frames as we need (total time / time per image = total # of images) 
            ims = [fr.next()[0] for i in xrange(0,st.duration/st.frame_duration)]
            # Now, we take the images that repeat themselves 
            ims = [ims[i] for i in xrange(0,len(ims)) if ((i % (st.time_per_image/st.frame_duration)) == 0)] 
            images.append(ims)
        
        # Saving images 
        print 'Saving Images '
        
        # Concatenate and save 
        ims = numpy.concatenate(images,axis=0)  
        images_filename = save_to + 'images' + quality + stimuli_type + format
        f = open(images_filename,'wb')
        cPickle.dump(ims,f)
        
        ## Get the voltage for all the cells 
        for cell_number in range(number_of_cells):
            print 'Extracting Voltage for cell ', cell_number 
            
            vm = [] # Intialize voltage list 
            for i,seg in enumerate(segments):
                # get vm 
                v = seg.get_vm(analog_ids[cell_number])
                # Check that the voltage between segments match
                if vm != []:
                    assert vm[-1][-1] == v.magnitude[0]                 
                # Append 
                vm.append(v.magnitude)    
                
              
            # Concatenate the experiments
            print 'Concatenating Voltage'
            vm = [v[:-1] for v in vm] # Take the last element out  
            vm = numpy.concatenate(vm,axis=0)
            
            print 'voltage shape=', numpy.shape(vm)
            # Save the voltage
            print 'Saving Voltage for cell', cell_number 
            voltage_filename = save_to + 'vm' + '_cell_'+ str(cell_number) + quality + stimuli_type + '.pickle'
            f = open(voltage_filename,'wb')
            cPickle.dump(vm,f)         

# 需要导入模块: from mozaik.tools.mozaik_parametrized import MozaikParametrized [as 别名]
# 或者: from mozaik.tools.mozaik_parametrized.MozaikParametrized import idd [as 别名]
import numpy
from mozaik.storage import queries
from mozaik.controller import Global
Global.root_directory = sys.argv[1]+'/'

setup_logging()

data_store = PickledDataStore(load=True,parameters=ParameterSet({'root_directory':sys.argv[1],'store_stimuli' : False}),replace=True)

NeuronAnnotationsToPerNeuronValues(data_store,ParameterSet({})).analyse()
analog_ids = queries.param_filter_query(data_store,sheet_name="V1_Exc_L4").get_segments()[0].get_stored_esyn_ids()


dsv = queries.param_filter_query(data_store,st_name='FlashedBar')
for ads in dsv.get_analysis_result():
    sid = MozaikParametrized.idd(ads.stimulus_id)
    sid.x=0
    ads.stimulus_id = str(sid)
for seg in dsv.get_segments():    
    sid = MozaikParametrized.idd(seg.annotations['stimulus'])
    sid.x=0
    seg.annotations['stimulus'] = str(sid)
for seg in dsv.get_segments(null=True):    
    sid = MozaikParametrized.idd(seg.annotations['stimulus'])
    sid.x=0
    seg.annotations['stimulus'] = str(sid)    


def save_data(dirname,dsv,name):

    try:

# 需要导入模块: from mozaik.tools.mozaik_parametrized import MozaikParametrized [as 别名]
# 或者: from mozaik.tools.mozaik_parametrized.MozaikParametrized import idd [as 别名]
    def process_input(self, visual_space, stimulus, duration=None, offset=0):
        """
        Present a visual stimulus to the model, and create the LGN output
        (relay) neurons.
        
        Parameters
        ----------
        visual_space : VisualSpace
                     The visual space to which the stimuli are presented.
                     
        stimulus : VisualStimulus    
                 The visual stimulus to be shown.
        
        duration : int (ms)
                 The time for which we will simulate the stimulus
        
        offset : int(ms)
               The time (in absolute time of the whole simulation) at which the stimulus starts.
        
        Returns
        -------
        retinal_input : list(ndarray)
                      List of 2D arrays containing the frames of luminances that were presented to the retina.
        """
        logger.debug("Presenting visual stimulus from visual space %s" % visual_space)
        visual_space.set_duration(duration)
        self.input = visual_space
        st = MozaikParametrized.idd(stimulus)
        st.trial = None  # to avoid recalculating RFs response to multiple trials of the same stimulus

        cached = self.get_cache(st)

        if cached == None:
            logger.debug("Generating output spikes...")
            (input_currents, retinal_input) = self._calculate_input_currents(visual_space,
                                                                            duration)
        else:
            logger.debug("Retrieved spikes from cache...")
            (input_currents, retinal_input) = cached

        ts = self.model.sim.get_time_step()
        #import pylab
        #pylab.figure()
        for rf_type in self.rf_types:
            assert isinstance(input_currents[rf_type], list)
            for i, (lgn_cell, input_current, scs, ncs) in enumerate(
                                                            zip(self.sheets[rf_type].pop,
                                                                input_currents[rf_type],
                                                                self.scs[rf_type],
                                                                self.ncs[rf_type])):
                assert isinstance(input_current, dict)
                #if i==0:
                #    pylab.plot(self.parameters.linear_scaler * input_current['amplitudes'])
                t = input_current['times'] + offset
                a = self.parameters.linear_scaler * input_current['amplitudes']
                scs.set_parameters(times=t, amplitudes=a)
                if self.parameters.mpi_reproducible_noise:
                    t = numpy.arange(0, duration, ts) + offset
                    amplitudes = (self.parameters.noise.mean
                                   + self.parameters.noise.stdev
                                       * self.ncs_rng[rf_type][i].randn(len(t)))
                    ncs.set_parameters(times=t, amplitudes=amplitudes)
        # for debugging/testing, doesn't work with MPI !!!!!!!!!!!!
        #input_current_array = numpy.zeros((self.shape[1], self.shape[0], len(visual_space.time_points(duration))))
        #update_factor = int(visual_space.update_interval/self.parameters.receptive_field.temporal_resolution)
        #logger.debug("input_current_array.shape = %s, update_factor = %d, p.dim = %s" % (input_current_array.shape, update_factor, self.shape))
        #k = 0
        #for i in range(self.shape[1]): # self.sahpe gives (x,y), so self.shape[1] is the height
        #    for j in range(self.shape[0]):
                # where the kernel temporal resolution is finer than the frame update interval,
                # we only keep the current values at the start of each frame
        #        input_current_array[i,j, :] = input_currents['X_ON'][k]['amplitudes'][::update_factor]
        #        k += 1

        # if record() has already been called, setup the recording now
        self._built = True
        self.write_cache(st, input_currents, retinal_input)
        return retinal_input

# 需要导入模块: from mozaik.tools.mozaik_parametrized import MozaikParametrized [as 别名]
# 或者: from mozaik.tools.mozaik_parametrized.MozaikParametrized import idd [as 别名]
def equal_stimulus(dsv,except_params):
    """
    This functions returns True if DSV contains only recordings associated
    with stimuli of identical parameter values, with the exception of parameters in *except_params*
    """
    return matching_parametrized_object_params([MozaikParametrized.idd(s) for s in dsv.get_stimuli()],except_params=['name'])

# 需要导入模块: from mozaik.tools.mozaik_parametrized import MozaikParametrized [as 别名]
# 或者: from mozaik.tools.mozaik_parametrized.MozaikParametrized import idd [as 别名]
def equal_stimulus_type(dsv):
    """
    This functions returns True if DSV contains only recordings associated
    with the same stimulus type. Otherwise False.
    """
    return matching_parametrized_object_params([MozaikParametrized.idd(s) for s in dsv.get_stimuli()],params=['name'])

# 需要导入模块: from mozaik.tools.mozaik_parametrized import MozaikParametrized [as 别名]
# 或者: from mozaik.tools.mozaik_parametrized.MozaikParametrized import idd [as 别名]
def param_filter_query(dsv,ads_unique=False,rec_unique=False,**kwargs):
    """
    It will return DSV with only recordings and ADSs with mozaik parameters 
    whose values match the parameter values combinations provided in `kwargs`. 
    
    To restrict mozaik parameters of the stimuli associated with the ADS or recordings 
    pre-pend 'st_' to the parameter name.
    
    For the recordings, parameter sheet refers to the sheet for which the recording was done. 
    
    
    Parameters
    ----------
    
    dsv : DataStoreView
        The input DSV.
    
    ads_unique : bool, optional
               If True the query will raise an exception if the query does not identify a unique ADS.

    rec_unique : bool, optional
               If True the query will raise an exception if the query does not identify a unique recording.
    
    \*\*kwargs : dict
               Remaining keyword arguments will be interepreted as the mozaik parameter names and their associated values that all ASDs
               or recordings have to match. The values of the parameters should be either directly the values to match or list of values in which
               case this list is interpreted as *one of* of the values that each returned recording or ASD has to match (thus effectively there
               is an *and* operation between the different parameters and *or* operation between the values specified for the given mozaik parameters). 
               
    Examples
    --------
    >>> datastore.param_filter_query(datastore,identifier=['PerNeuronValue','SingleValue'],sheet_name=sheet,value_name='orientation preference')
    
    This command should return DSV containing all recordings and ADSs whose identifier is *PerNeuronValue* or *SingleValue*, and are associated with sheet named *sheet_name* and as their value name have 'orientation preference'.
    Note that since recordings do not have these parameters, this query would return a DSV containing only ADSs.
    
    >>> datastore.param_filter_query(datastore,st_orientation=0.5)
    
    This command should return DSV containing all recordings and ADSs that are associated with stimuli whose mozaik parameter orientation has value 0.5.
    """
    
    new_dsv = dsv.fromDataStoreView()
    
    st_kwargs = dict([(k[3:],kwargs[k]) for k in kwargs.keys() if k[0:3] == 'st_'])
    kwargs = dict([(k,kwargs[k]) for k in kwargs.keys() if k[0:3] != 'st_'])
    
    seg_st = [MozaikParametrized.idd(seg.annotations['stimulus']) for seg in dsv.block.segments]
    ads_st = [MozaikParametrized.idd(ads.stimulus_id) for ads in dsv.analysis_results if ads.stimulus_id != None]
    if 'sheet_name' in set(kwargs):
       if len(kwargs) == 1:
           # This means that there is only one 'non-stimulus' parameter sheet, and thus we need
           # to filter out all recordings that are associated with that sheet (otherwsie we do not pass any recordings)
           kw = kwargs['sheet_name'] if isinstance(kwargs['sheet_name'],list) else [kwargs['sheet_name']]
           seg_filtered = set([s for s in dsv.block.segments if s.annotations['sheet_name'] in kw])
       else:
           seg_filtered = set([]) 
    else:
           seg_filtered = set(dsv.block.segments)
    
    ads_filtered= set(filter_query(dsv.analysis_results,**kwargs))
    
    if st_kwargs != {}:
       seg_filtered_st= set(filter_query(seg_st,extra_data_list=dsv.block.segments,**st_kwargs)[1]) 
       ads_filtered_st= set(filter_query(ads_st,extra_data_list=[ads for ads in dsv.analysis_results if ads.stimulus_id != None],**st_kwargs)[1])
    else:
       ads_filtered_st = set(dsv.analysis_results)
       seg_filtered_st = set(dsv.block.segments)
    
    
    seg = seg_filtered_st & seg_filtered
    ads = ads_filtered_st & ads_filtered
    
    new_dsv.sensory_stimulus = dsv.sensory_stimulus_copy()
    new_dsv.block.segments = list(seg)
    new_dsv.analysis_results = list(ads)
    
    if ads_unique and len(ads) != 1:
       raise ValueError("Result was expected to have only single ADS, it contains %d" % len(ads)) 
        
    if rec_unique and len(seg) != 1:
       raise ValueError("Result was expected to have only single Segment, it contains %d" % len(seg)) 
    
    return new_dsv