Python Report.parse_folder方法代码示例

# 需要导入模块: from mne.report import Report [as 别名]
# 或者: from mne.report.Report import parse_folder [as 别名]
def test_render_report():
    """Test rendering -*.fif files for mne report.
    """

    report = Report(info_fname=raw_fname)
    with warnings.catch_warnings(record=True) as w:
        warnings.simplefilter('always')
        report.parse_folder(data_path=base_dir)
    assert_true(len(w) == 1)

    # Check correct paths and filenames
    assert_true(raw_fname in report.fnames)
    assert_true(event_name in report.fnames)
    assert_true(report.data_path == base_dir)

    # Check if all files were rendered in the report
    fnames = glob.glob(op.join(base_dir, '*.fif'))
    bad_name = 'test_ctf_comp_raw-eve.fif'
    decrement = any(fname.endswith(bad_name) for fname in fnames)
    fnames = [fname for fname in fnames if
              fname.endswith(('-eve.fif', '-ave.fif', '-cov.fif',
                              '-sol.fif', '-fwd.fif', '-inv.fif',
                              '-src.fif', '-trans.fif', 'raw.fif',
                              'sss.fif', '-epo.fif')) and
              not fname.endswith(bad_name)]
    # last file above gets created by another test, and it shouldn't be there

    for fname in fnames:
        assert_true(''.join(report.html).find(op.basename(fname)) != -1)

    assert_equal(len(report.fnames), len(fnames))
    assert_equal(len(report.html), len(report.fnames))

    evoked1 = read_evokeds(evoked1_fname)
    evoked2 = read_evokeds(evoked2_fname)
    assert_equal(len(report.fnames) + len(evoked1) + len(evoked2) - 2,
                 report.initial_id - decrement)

    # Check saving functionality
    report.data_path = tempdir
    report.save(fname=op.join(tempdir, 'report.html'), open_browser=False)
    assert_true(op.isfile(op.join(tempdir, 'report.html')))

    # Check add_section functionality
    fig = evoked1[0].plot(show=False)
    report.add_section(figs=fig,  # test non-list input
                       captions=['evoked response'])
    assert_equal(len(report.html), len(fnames) + 1)
    assert_equal(len(report.html), len(report.fnames))
    assert_raises(ValueError, report.add_section, figs=[fig, fig],
                  captions='H')

    # Check saving same report to new filename
    report.save(fname=op.join(tempdir, 'report2.html'), open_browser=False)
    assert_true(op.isfile(op.join(tempdir, 'report2.html')))

    # Check overwriting file
    report.save(fname=op.join(tempdir, 'report.html'), open_browser=False,
                overwrite=True)
    assert_true(op.isfile(op.join(tempdir, 'report.html')))

# 需要导入模块: from mne.report import Report [as 别名]
# 或者: from mne.report.Report import parse_folder [as 别名]
def test_render_report():
    """Test rendering -*.fif files for mne report.
    """
    tempdir = _TempDir()
    raw_fname_new = op.join(tempdir, 'temp_raw.fif')
    event_fname_new = op.join(tempdir, 'temp_raw-eve.fif')
    cov_fname_new = op.join(tempdir, 'temp_raw-cov.fif')
    fwd_fname_new = op.join(tempdir, 'temp_raw-fwd.fif')
    inv_fname_new = op.join(tempdir, 'temp_raw-inv.fif')
    for a, b in [[raw_fname, raw_fname_new],
                 [event_fname, event_fname_new],
                 [cov_fname, cov_fname_new],
                 [fwd_fname, fwd_fname_new],
                 [inv_fname, inv_fname_new]]:
        shutil.copyfile(a, b)

    # create and add -epo.fif and -ave.fif files
    epochs_fname = op.join(tempdir, 'temp-epo.fif')
    evoked_fname = op.join(tempdir, 'temp-ave.fif')
    raw = Raw(raw_fname_new)
    picks = pick_types(raw.info, meg='mag', eeg=False)  # faster with one type
    epochs = Epochs(raw, read_events(event_fname), 1, -0.2, 0.2, picks=picks)
    epochs.save(epochs_fname)
    epochs.average().save(evoked_fname)

    report = Report(info_fname=raw_fname_new, subjects_dir=subjects_dir)
    with warnings.catch_warnings(record=True) as w:
        warnings.simplefilter('always')
        report.parse_folder(data_path=tempdir)
    assert_true(len(w) >= 1)

    # Check correct paths and filenames
    fnames = glob.glob(op.join(tempdir, '*.fif'))
    for fname in fnames:
        assert_true(op.basename(fname) in
                    [op.basename(x) for x in report.fnames])
        assert_true(''.join(report.html).find(op.basename(fname)) != -1)

    assert_equal(len(report.fnames), len(fnames))
    assert_equal(len(report.html), len(report.fnames))

    # Check saving functionality
    report.data_path = tempdir
    report.save(fname=op.join(tempdir, 'report.html'), open_browser=False)
    assert_true(op.isfile(op.join(tempdir, 'report.html')))

    assert_equal(len(report.html), len(fnames))
    assert_equal(len(report.html), len(report.fnames))

    # Check saving same report to new filename
    report.save(fname=op.join(tempdir, 'report2.html'), open_browser=False)
    assert_true(op.isfile(op.join(tempdir, 'report2.html')))

    # Check overwriting file
    report.save(fname=op.join(tempdir, 'report.html'), open_browser=False,
                overwrite=True)
    assert_true(op.isfile(op.join(tempdir, 'report.html')))

# 需要导入模块: from mne.report import Report [as 别名]
# 或者: from mne.report.Report import parse_folder [as 别名]
def test_render_mri():
    """Test rendering MRI for mne report.
    """
    report = Report(info_fname=raw_fname,
                    subject='sample', subjects_dir=subjects_dir)
    with warnings.catch_warnings(record=True):
        warnings.simplefilter('always')
        report.parse_folder(data_path=data_dir,
                            pattern='*sample_audvis_raw-trans.fif')

# 需要导入模块: from mne.report import Report [as 别名]
# 或者: from mne.report.Report import parse_folder [as 别名]
def test_render_mri_without_bem():
    """Test rendering MRI without BEM for mne report."""
    tempdir = _TempDir()
    os.mkdir(op.join(tempdir, 'sample'))
    os.mkdir(op.join(tempdir, 'sample', 'mri'))
    shutil.copyfile(mri_fname, op.join(tempdir, 'sample', 'mri', 'T1.mgz'))
    report = Report(info_fname=raw_fname,
                    subject='sample', subjects_dir=tempdir)
    report.parse_folder(tempdir, render_bem=False)
    report.save(op.join(tempdir, 'report.html'), open_browser=False)

# 需要导入模块: from mne.report import Report [as 别名]
# 或者: from mne.report.Report import parse_folder [as 别名]
def test_render_mri():
    """Test rendering MRI for mne report."""
    tempdir = _TempDir()
    trans_fname_new = op.join(tempdir, 'temp-trans.fif')
    for a, b in [[trans_fname, trans_fname_new]]:
        shutil.copyfile(a, b)
    report = Report(info_fname=raw_fname,
                    subject='sample', subjects_dir=subjects_dir)
    report.parse_folder(data_path=tempdir, mri_decim=30, pattern='*')
    report.save(op.join(tempdir, 'report.html'), open_browser=False)
    assert repr(report)

# 需要导入模块: from mne.report import Report [as 别名]
# 或者: from mne.report.Report import parse_folder [as 别名]
def test_render_mri():
    """Test rendering MRI for mne report.
    """
    tempdir = _TempDir()
    trans_fname_new = op.join(tempdir, "temp-trans.fif")
    for a, b in [[trans_fname, trans_fname_new]]:
        shutil.copyfile(a, b)
    report = Report(info_fname=raw_fname, subject="sample", subjects_dir=subjects_dir)
    with warnings.catch_warnings(record=True):
        warnings.simplefilter("always")
        report.parse_folder(data_path=tempdir, mri_decim=30, pattern="*", n_jobs=2)
    report.save(op.join(tempdir, "report.html"), open_browser=False)

# 需要导入模块: from mne.report import Report [as 别名]
# 或者: from mne.report.Report import parse_folder [as 别名]
def test_render_mri_without_bem():
    """Test rendering MRI without BEM for mne report."""
    tempdir = _TempDir()
    os.mkdir(op.join(tempdir, 'sample'))
    os.mkdir(op.join(tempdir, 'sample', 'mri'))
    shutil.copyfile(mri_fname, op.join(tempdir, 'sample', 'mri', 'T1.mgz'))
    report = Report(info_fname=raw_fname,
                    subject='sample', subjects_dir=tempdir)
    with warnings.catch_warnings(record=True) as w:
        warnings.simplefilter('always')
        report.parse_folder(tempdir)
    assert_true(len(w) >= 1)
    report.save(op.join(tempdir, 'report.html'), open_browser=False)

# 需要导入模块: from mne.report import Report [as 别名]
# 或者: from mne.report.Report import parse_folder [as 别名]
def run():
    from mne.commands.utils import get_optparser

    parser = get_optparser(__file__)

    parser.add_option("-p", "--path", dest="path",
                      help="Path to folder who MNE-Report must be created")
    parser.add_option("-i", "--info", dest="info_fname",
                      help="File from which info dictionary is to be read",
                      metavar="FILE")
    parser.add_option("-d", "--subjects-dir", dest="subjects_dir",
                      help="The subjects directory")
    parser.add_option("-s", "--subject", dest="subject",
                      help="The subject name")
    parser.add_option("-v", "--verbose", dest="verbose",
                      action='store_true', help="run in verbose mode")
    parser.add_option("--no-browser", dest="no_browser", action='store_false',
                      help="Do not open MNE-Report in browser")
    parser.add_option("--overwrite", dest="overwrite", action='store_false',
                      help="Overwrite html report if it already exists")
    parser.add_option("-j", "--jobs", dest="n_jobs", help="Number of jobs to"
                      " run in parallel")
    parser.add_option("-m", "--mri-decim", type="int", dest="mri_decim",
                      default=2, help="Integer factor used to decimate "
                      "BEM plots")

    options, args = parser.parse_args()
    path = options.path
    if path is None:
        parser.print_help()
        sys.exit(1)
    info_fname = options.info_fname
    subjects_dir = options.subjects_dir
    subject = options.subject
    mri_decim = int(options.mri_decim)
    verbose = True if options.verbose is not None else False
    open_browser = False if options.no_browser is not None else True
    overwrite = True if options.overwrite is not None else False
    n_jobs = int(options.n_jobs) if options.n_jobs is not None else 1

    t0 = time.time()
    report = Report(info_fname, subjects_dir=subjects_dir, subject=subject,
                    verbose=verbose)
    report.parse_folder(path, verbose=verbose, n_jobs=n_jobs,
                        mri_decim=mri_decim)
    log_elapsed(time.time() - t0, verbose=verbose)
    report.save(open_browser=open_browser, overwrite=overwrite)

# 需要导入模块: from mne.report import Report [as 别名]
# 或者: from mne.report.Report import parse_folder [as 别名]
def test_report_raw_psd_and_date():
    """Test report raw PSD and DATE_NONE functionality."""
    with pytest.raises(TypeError, match='dict'):
        Report(raw_psd='foo')

    tempdir = _TempDir()
    raw = read_raw_fif(raw_fname).crop(0, 1.).load_data()
    raw_fname_new = op.join(tempdir, 'temp_raw.fif')
    raw.save(raw_fname_new)
    report = Report(raw_psd=True)
    report.parse_folder(data_path=tempdir, render_bem=False,
                        on_error='raise')
    assert isinstance(report.html, list)
    assert 'PSD' in ''.join(report.html)
    assert 'GMT' in ''.join(report.html)

    # DATE_NONE functionality
    report = Report()
    raw.anonymize()
    raw.save(raw_fname_new, overwrite=True)
    report.parse_folder(data_path=tempdir, render_bem=False,
                        on_error='raise')
    assert isinstance(report.html, list)
    assert 'GMT' not in ''.join(report.html)

# 需要导入模块: from mne.report import Report [as 别名]
# 或者: from mne.report.Report import parse_folder [as 别名]
from mne.datasets import sample
from mne import read_evokeds
from matplotlib import pyplot as plt


data_path = sample.data_path()
meg_path = data_path + '/MEG/sample'
subjects_dir = data_path + '/subjects'
evoked_fname = meg_path + '/sample_audvis-ave.fif'

###############################################################################
# Do standard folder parsing (this can take a couple of minutes):

report = Report(image_format='png', subjects_dir=subjects_dir,
                info_fname=evoked_fname, subject='sample', raw_psd=True)
report.parse_folder(meg_path)

###############################################################################
# Add a custom section with an evoked slider:

# Load the evoked data
evoked = read_evokeds(evoked_fname, condition='Left Auditory',
                      baseline=(None, 0), verbose=False)
evoked.crop(0, .2)
times = evoked.times[::4]
# Create a list of figs for the slider
figs = list()
for t in times:
    figs.append(evoked.plot_topomap(t, vmin=-300, vmax=300, res=100,
                                    show=False))
    plt.close(figs[-1])

# 需要导入模块: from mne.report import Report [as 别名]
# 或者: from mne.report.Report import parse_folder [as 别名]
def test_render_report():
    """Test rendering -*.fif files for mne report."""
    tempdir = _TempDir()
    raw_fname_new = op.join(tempdir, 'temp_raw.fif')
    event_fname_new = op.join(tempdir, 'temp_raw-eve.fif')
    cov_fname_new = op.join(tempdir, 'temp_raw-cov.fif')
    fwd_fname_new = op.join(tempdir, 'temp_raw-fwd.fif')
    inv_fname_new = op.join(tempdir, 'temp_raw-inv.fif')
    for a, b in [[raw_fname, raw_fname_new],
                 [event_fname, event_fname_new],
                 [cov_fname, cov_fname_new],
                 [fwd_fname, fwd_fname_new],
                 [inv_fname, inv_fname_new]]:
        shutil.copyfile(a, b)

    # create and add -epo.fif and -ave.fif files
    epochs_fname = op.join(tempdir, 'temp-epo.fif')
    evoked_fname = op.join(tempdir, 'temp-ave.fif')
    # Speed it up by picking channels
    raw = read_raw_fif(raw_fname_new, preload=True)
    raw.pick_channels(['MEG 0111', 'MEG 0121'])
    epochs = Epochs(raw, read_events(event_fname), 1, -0.2, 0.2)
    epochs.save(epochs_fname)
    # This can take forever (stall Travis), so let's make it fast
    # Also, make sure crop range is wide enough to avoid rendering bug
    epochs.average().crop(0.1, 0.2).save(evoked_fname)

    report = Report(info_fname=raw_fname_new, subjects_dir=subjects_dir)
    with warnings.catch_warnings(record=True) as w:
        warnings.simplefilter('always')
        report.parse_folder(data_path=tempdir, on_error='raise')
    assert_true(len(w) >= 1)
    assert_true(repr(report))

    # Check correct paths and filenames
    fnames = glob.glob(op.join(tempdir, '*.fif'))
    for fname in fnames:
        assert_true(op.basename(fname) in
                    [op.basename(x) for x in report.fnames])
        assert_true(''.join(report.html).find(op.basename(fname)) != -1)

    assert_equal(len(report.fnames), len(fnames))
    assert_equal(len(report.html), len(report.fnames))
    assert_equal(len(report.fnames), len(report))

    # Check saving functionality
    report.data_path = tempdir
    report.save(fname=op.join(tempdir, 'report.html'), open_browser=False)
    assert_true(op.isfile(op.join(tempdir, 'report.html')))

    assert_equal(len(report.html), len(fnames))
    assert_equal(len(report.html), len(report.fnames))

    # Check saving same report to new filename
    report.save(fname=op.join(tempdir, 'report2.html'), open_browser=False)
    assert_true(op.isfile(op.join(tempdir, 'report2.html')))

    # Check overwriting file
    report.save(fname=op.join(tempdir, 'report.html'), open_browser=False,
                overwrite=True)
    assert_true(op.isfile(op.join(tempdir, 'report.html')))

    # Check pattern matching with multiple patterns
    pattern = ['*raw.fif', '*eve.fif']
    with warnings.catch_warnings(record=True) as w:
        warnings.simplefilter('always')
        report.parse_folder(data_path=tempdir, pattern=pattern)
    assert_true(len(w) >= 1)
    assert_true(repr(report))

    fnames = glob.glob(op.join(tempdir, '*.raw')) + \
        glob.glob(op.join(tempdir, '*.raw'))
    for fname in fnames:
        assert_true(op.basename(fname) in
                    [op.basename(x) for x in report.fnames])
        assert_true(''.join(report.html).find(op.basename(fname)) != -1)

    assert_raises(ValueError, Report, image_format='foo')
    assert_raises(ValueError, Report, image_format=None)

    # SVG rendering
    report = Report(info_fname=raw_fname_new, subjects_dir=subjects_dir,
                    image_format='svg')
    with warnings.catch_warnings(record=True) as w:
        warnings.simplefilter('always')
        report.parse_folder(data_path=tempdir, on_error='raise')

# 需要导入模块: from mne.report import Report [as 别名]
# 或者: from mne.report.Report import parse_folder [as 别名]
def run():
    """Run command."""
    from mne.commands.utils import get_optparser

    parser = get_optparser(__file__)

    parser.add_option("-p", "--path", dest="path",
                      help="Path to folder who MNE-Report must be created")
    parser.add_option("-i", "--info", dest="info_fname",
                      help="File from which info dictionary is to be read",
                      metavar="FILE")
    parser.add_option("-c", "--cov", dest="cov_fname",
                      help="File from which noise covariance is to be read",
                      metavar="FILE")
    parser.add_option("--bmin", dest="bmin",
                      help="Time at which baseline correction starts for "
                      "evokeds", default=None)
    parser.add_option("--bmax", dest="bmax",
                      help="Time at which baseline correction stops for "
                      "evokeds", default=None)
    parser.add_option("-d", "--subjects-dir", dest="subjects_dir",
                      help="The subjects directory")
    parser.add_option("-s", "--subject", dest="subject",
                      help="The subject name")
    parser.add_option("-v", "--verbose", dest="verbose",
                      action='store_true', help="run in verbose mode")
    parser.add_option("--no-browser", dest="no_browser", action='store_false',
                      help="Do not open MNE-Report in browser")
    parser.add_option("--overwrite", dest="overwrite", action='store_false',
                      help="Overwrite html report if it already exists")
    parser.add_option("-j", "--jobs", dest="n_jobs", help="Number of jobs to"
                      " run in parallel")
    parser.add_option("-m", "--mri-decim", type="int", dest="mri_decim",
                      default=2, help="Integer factor used to decimate "
                      "BEM plots")

    options, args = parser.parse_args()
    path = options.path
    if path is None:
        parser.print_help()
        sys.exit(1)
    info_fname = options.info_fname
    cov_fname = options.cov_fname
    subjects_dir = options.subjects_dir
    subject = options.subject
    mri_decim = int(options.mri_decim)
    verbose = True if options.verbose is not None else False
    open_browser = False if options.no_browser is not None else True
    overwrite = True if options.overwrite is not None else False
    n_jobs = int(options.n_jobs) if options.n_jobs is not None else 1

    bmin = float(options.bmin) if options.bmin is not None else None
    bmax = float(options.bmax) if options.bmax is not None else None
    # XXX: this means (None, None) cannot be specified through command line
    if bmin is None and bmax is None:
        baseline = None
    else:
        baseline = (bmin, bmax)

    t0 = time.time()
    report = Report(info_fname, subjects_dir=subjects_dir,
                    subject=subject, baseline=baseline,
                    cov_fname=cov_fname, verbose=verbose)
    report.parse_folder(path, verbose=verbose, n_jobs=n_jobs,
                        mri_decim=mri_decim)
    log_elapsed(time.time() - t0, verbose=verbose)
    report.save(open_browser=open_browser, overwrite=overwrite)

# 需要导入模块: from mne.report import Report [as 别名]
# 或者: from mne.report.Report import parse_folder [as 别名]
def test_render_report():
    """Test rendering -*.fif files for mne report."""
    tempdir = _TempDir()
    raw_fname_new = op.join(tempdir, 'temp_raw.fif')
    event_fname_new = op.join(tempdir, 'temp_raw-eve.fif')
    cov_fname_new = op.join(tempdir, 'temp_raw-cov.fif')
    fwd_fname_new = op.join(tempdir, 'temp_raw-fwd.fif')
    inv_fname_new = op.join(tempdir, 'temp_raw-inv.fif')
    for a, b in [[raw_fname, raw_fname_new],
                 [event_fname, event_fname_new],
                 [cov_fname, cov_fname_new],
                 [fwd_fname, fwd_fname_new],
                 [inv_fname, inv_fname_new]]:
        shutil.copyfile(a, b)

    # create and add -epo.fif and -ave.fif files
    epochs_fname = op.join(tempdir, 'temp-epo.fif')
    evoked_fname = op.join(tempdir, 'temp-ave.fif')
    raw = read_raw_fif(raw_fname_new)
    picks = pick_types(raw.info, meg='mag', eeg=False)  # faster with one type
    epochs = Epochs(raw, read_events(event_fname), 1, -0.2, 0.2, picks=picks)
    epochs.save(epochs_fname)
    epochs.average().save(evoked_fname)

    report = Report(info_fname=raw_fname_new, subjects_dir=subjects_dir)
    if sys.version.startswith('3.5'):  # XXX Some strange MPL/3.5 error...
        raise SkipTest('Python 3.5 and mpl have unresolved issues')
    with warnings.catch_warnings(record=True) as w:
        warnings.simplefilter('always')
        report.parse_folder(data_path=tempdir, on_error='raise')
    assert_true(len(w) >= 1)
    assert_true(repr(report))

    # Check correct paths and filenames
    fnames = glob.glob(op.join(tempdir, '*.fif'))
    for fname in fnames:
        assert_true(op.basename(fname) in
                    [op.basename(x) for x in report.fnames])
        assert_true(''.join(report.html).find(op.basename(fname)) != -1)

    assert_equal(len(report.fnames), len(fnames))
    assert_equal(len(report.html), len(report.fnames))
    assert_equal(len(report.fnames), len(report))

    # Check saving functionality
    report.data_path = tempdir
    report.save(fname=op.join(tempdir, 'report.html'), open_browser=False)
    assert_true(op.isfile(op.join(tempdir, 'report.html')))

    assert_equal(len(report.html), len(fnames))
    assert_equal(len(report.html), len(report.fnames))

    # Check saving same report to new filename
    report.save(fname=op.join(tempdir, 'report2.html'), open_browser=False)
    assert_true(op.isfile(op.join(tempdir, 'report2.html')))

    # Check overwriting file
    report.save(fname=op.join(tempdir, 'report.html'), open_browser=False,
                overwrite=True)
    assert_true(op.isfile(op.join(tempdir, 'report.html')))

    # Check pattern matching with multiple patterns
    pattern = ['*raw.fif', '*eve.fif']
    with warnings.catch_warnings(record=True) as w:
        warnings.simplefilter('always')
        report.parse_folder(data_path=tempdir, pattern=pattern)
    assert_true(len(w) >= 1)
    assert_true(repr(report))

    fnames = glob.glob(op.join(tempdir, '*.raw')) + \
        glob.glob(op.join(tempdir, '*.raw'))
    for fname in fnames:
        assert_true(op.basename(fname) in
                    [op.basename(x) for x in report.fnames])
        assert_true(''.join(report.html).find(op.basename(fname)) != -1)

# 需要导入模块: from mne.report import Report [as 别名]
# 或者: from mne.report.Report import parse_folder [as 别名]
def test_render_report():
    """Test rendering -*.fif files for mne report."""
    tempdir = _TempDir()
    raw_fname_new = op.join(tempdir, 'temp_raw.fif')
    ms_fname_new = op.join(tempdir, 'temp_ms_raw.fif')
    event_fname_new = op.join(tempdir, 'temp_raw-eve.fif')
    cov_fname_new = op.join(tempdir, 'temp_raw-cov.fif')
    fwd_fname_new = op.join(tempdir, 'temp_raw-fwd.fif')
    inv_fname_new = op.join(tempdir, 'temp_raw-inv.fif')
    for a, b in [[raw_fname, raw_fname_new],
                 [ms_fname, ms_fname_new],
                 [event_fname, event_fname_new],
                 [cov_fname, cov_fname_new],
                 [fwd_fname, fwd_fname_new],
                 [inv_fname, inv_fname_new]]:
        shutil.copyfile(a, b)

    # create and add -epo.fif and -ave.fif files
    epochs_fname = op.join(tempdir, 'temp-epo.fif')
    evoked_fname = op.join(tempdir, 'temp-ave.fif')
    # Speed it up by picking channels
    raw = read_raw_fif(raw_fname_new, preload=True)
    raw.pick_channels(['MEG 0111', 'MEG 0121'])
    raw.del_proj()
    epochs = Epochs(raw, read_events(event_fname), 1, -0.2, 0.2)
    epochs.save(epochs_fname)
    # This can take forever (stall Travis), so let's make it fast
    # Also, make sure crop range is wide enough to avoid rendering bug
    epochs.average().crop(0.1, 0.2).save(evoked_fname)

    report = Report(info_fname=raw_fname_new, subjects_dir=subjects_dir)
    with pytest.warns(RuntimeWarning, match='Cannot render MRI'):
        report.parse_folder(data_path=tempdir, on_error='raise')
    assert repr(report)

    # Check correct paths and filenames
    fnames = glob.glob(op.join(tempdir, '*.fif'))
    for fname in fnames:
        assert (op.basename(fname) in
                [op.basename(x) for x in report.fnames])
        assert (''.join(report.html).find(op.basename(fname)) != -1)

    assert_equal(len(report.fnames), len(fnames))
    assert_equal(len(report.html), len(report.fnames))
    assert_equal(len(report.fnames), len(report))

    # Check saving functionality
    report.data_path = tempdir
    fname = op.join(tempdir, 'report.html')
    report.save(fname=fname, open_browser=False)
    assert (op.isfile(fname))
    with open(fname, 'rb') as fid:
        html = fid.read().decode('utf-8')
    assert '(MaxShield on)' in html

    assert_equal(len(report.html), len(fnames))
    assert_equal(len(report.html), len(report.fnames))

    # Check saving same report to new filename
    report.save(fname=op.join(tempdir, 'report2.html'), open_browser=False)
    assert (op.isfile(op.join(tempdir, 'report2.html')))

    # Check overwriting file
    report.save(fname=op.join(tempdir, 'report.html'), open_browser=False,
                overwrite=True)
    assert (op.isfile(op.join(tempdir, 'report.html')))

    # Check pattern matching with multiple patterns
    pattern = ['*raw.fif', '*eve.fif']
    with pytest.warns(RuntimeWarning, match='Cannot render MRI'):
        report.parse_folder(data_path=tempdir, pattern=pattern)
    assert (repr(report))

    fnames = glob.glob(op.join(tempdir, '*.raw')) + \
        glob.glob(op.join(tempdir, '*.raw'))
    for fname in fnames:
        assert (op.basename(fname) in
                [op.basename(x) for x in report.fnames])
        assert (''.join(report.html).find(op.basename(fname)) != -1)

    pytest.raises(ValueError, Report, image_format='foo')
    pytest.raises(ValueError, Report, image_format=None)

    # SVG rendering
    report = Report(info_fname=raw_fname_new, subjects_dir=subjects_dir,
                    image_format='svg')
    with pytest.warns(RuntimeWarning, match='Cannot render MRI'):
        report.parse_folder(data_path=tempdir, on_error='raise')

    # ndarray support smoke test
    report.add_figs_to_section(np.zeros((2, 3, 3)), 'caption', 'section')

# 需要导入模块: from mne.report import Report [as 别名]
# 或者: from mne.report.Report import parse_folder [as 别名]
    parser.add_option("-i", "--info", dest="info_fname",
                      help="File from which info dictionary is to be read",
                      metavar="FILE")
    parser.add_option("-d", "--subjects-dir", dest="subjects_dir",
                      help="The subjects directory")
    parser.add_option("-s", "--subject", dest="subject",
                      help="The subject name")
    parser.add_option("-v", "--verbose", dest="verbose",
                      action='store_true', help="run in verbose mode")
    parser.add_option("--no-browser", dest="no_browser", action='store_false',
                      help="Do not open MNE-Report in browser")
    parser.add_option("--overwrite", dest="overwrite", action='store_false',
                      help="Overwrite html report if it already exists")
    parser.add_option("-j", "--jobs", dest="n_jobs", help="Number of jobs to"
                      " run in parallel")

    options, args = parser.parse_args()
    path = options.path
    info_fname = options.info_fname
    subjects_dir = options.subjects_dir
    subject = options.subject
    verbose = True if options.verbose is not None else False
    open_browser = False if options.no_browser is not None else True
    overwrite = True if options.overwrite is not None else False
    n_jobs = int(options.n_jobs) if options.n_jobs is not None else 1

    report = Report(info_fname, subjects_dir=subjects_dir, subject=subject,
                    verbose=verbose)
    report.parse_folder(path, verbose=verbose, n_jobs=n_jobs)
    report.save(open_browser=open_browser, overwrite=overwrite)