Python JFrame.isVisible方法代码示例

# 需要导入模块: from javax.swing import JFrame [as 别名]
# 或者: from javax.swing.JFrame import isVisible [as 别名]

#.........这里部分代码省略.........
      if job != self.currentJob:
        self.currentProgress.setValue(self.currentProgress.getMaximum())
        self.globalLabel.setText(job)
        self.globalProgress.setValue(self.jobCount)
        print "Processing %s, %.2f%% done" % (job, 100.0*self.jobCount/self.numJobs)
        self.jobCount += 1
        self.currentJob = job
        self.message = -1
      self.message += 1
      print "    %s, %.2f%% done" % (self.messages[self.message], 100.0*self.message/len(self.messages))
      self.currentProgress.setValue(self.message)
      self.currentLabel.setText(self.messages[self.message])
    else:
      if job != self.currentJob:
        print "Processing %s, %.2f%% done" % (job, 100.0*self.jobCount/self.numJobs)
        self.jobCount += 1
        self.currentJob = job
        self.message = -1
      self.message += 1
      print "    %s, %.2f%% done" % (self.messages[self.message], 100.0*self.message/len(self.messages))

  def finished(self):
    """
    This function is to be called at the end of the pipeline.  Informs the user that the pipeline is finished
    and if a swing interface is being used the Done button is enabled.
    """
    print "Processing 100.00% done"
    if self.frame:
      self.globalLabel.setText("Finished")
      self.globalProgress.setValue(self.globalProgress.getMaximum())
      self.currentLabel.setText(" ")
      self.currentProgress.setValue(self.currentProgress.getMaximum())
      self.doneButton.setEnabled(True)
      while self.frame.isVisible():
        pass

  def run(self, blastLocation, genemarkLocation, transtermLocation, tRNAscanLocation, database, eValue, matrix, minLength, scaffoldingDistance, promoterScoreCutoff, queries, swing = False, email = ""):
    """
    blastLocation:       Directory blast was installed in.
    genemarkLocation:    Directory genemark was installed in.
    transtermLocation:   Directory transterm was installed in.
    tRNAscanLocation:    Directory tRNAscan was installed in.
    database:            Name of the blast database to use.
    eValue:              The e value used whenever a blast search is done.
    matrix:              The matrix to use when running genemark.  If None then genemark is run heuristically.
    minLength:           Minimum length of any genes included in the resulting annotation.
    scaffoldingDistance: The maximum length allowed between genes when contiguous regions of genes are being identified
    promoterScoreCutoff: Minimum score allowed for any promoters included in the resulting annotation
    queries:             A list of faster files to process.
    swing:               If true a swing window will be used to updated the user about the pipeline's progress.
    email:               If this is a non-empty string an email will be sent to the address in the string when the pipeline is done.  This will be attempted with the sendmail command on the local computer.
    
    The main pipeline function.  For every query genemark is used to predict genes, these genes are then extended to any preferable starts.  Then the pipeline searches
    for any intergenic genes(genes between those found by genemark) and these are combined with the extended genemark genes.  Then the genes are pruned to remove
    any undesirable genes found in the intergenic stage.  BPROM and Transterm are used to find promoters and terminators, which are then pruned to remove any
    signals which are inside or too far away from any genes.  Next, tRNAscan is used to find any transfer RNAs in the genome.  Finally, all the remaining genes,
    promoters, and terminators are written to an artemis file in the directory of the query with the same name but with a .art extension, and .xml, .html, and
    .xls files will be generating describing the blast results of the final genes.
    """
    self.initializeDisplay(queries, swing)

    try:
      for query in queries:
        name = os.path.splitext(query)[0]
        queryDirectory, name = os.path.split(name)
        

# 需要导入模块: from javax.swing import JFrame [as 别名]
# 或者: from javax.swing.JFrame import isVisible [as 别名]

#.........这里部分代码省略.........
    constraints.gridx = 0
    constraints.gridy = 0
    constraints.gridwidth = 1
    constraints.gridheight = 1
    constraints.fill = GridBagConstraints.HORIZONTAL
    constraints.weightx = 0
    constraints.weighty = 0
    contentPane.add(JLabel("Blast Location"), constraints)
    constraints.gridy = 1
    contentPane.add(JLabel("Genemark Location"), constraints)
    constraints.gridy = 2
    contentPane.add(JLabel("Transterm Location"), constraints)
    constraints.gridy = 3
    contentPane.add(JLabel("tRNAscan Location"), constraints)
    constraints.gridy = 4
    contentPane.add(JLabel("Databases Location"), constraints)
    constraints.gridy = 5
    contentPane.add(JLabel("Database"), constraints)
    constraints.gridy = 6
    contentPane.add(JLabel("Matrix(Leave blank to use heuristic matrix)"), constraints)
    constraints.gridy = 7
    contentPane.add(JLabel("E Value"), constraints)
    constraints.gridy = 8
    contentPane.add(JLabel("Minimum Intergenic Length"), constraints)
    constraints.gridy = 9
    contentPane.add(JLabel("Scaffold Distance"), constraints)
    constraints.gridy = 10
    contentPane.add(JLabel("Promoter Score Cutoff"), constraints)
    constraints.gridy = 11
    contentPane.add(JLabel("Query"), constraints)
    constraints.gridx = 1
    constraints.gridy = 0
    constraints.weightx = 1
    contentPane.add(blastField, constraints)
    constraints.gridy = 1
    contentPane.add(genemarkField, constraints)
    constraints.gridy = 2
    contentPane.add(transtermField, constraints)
    constraints.gridy = 3
    contentPane.add(tRNAscanField, constraints)
    constraints.gridy = 4
    contentPane.add(databaseLocationField, constraints)
    constraints.gridy = 5
    contentPane.add(databaseField, constraints)
    constraints.gridy = 6
    contentPane.add(matrixField, constraints)
    constraints.gridy = 7
    contentPane.add(eValueField, constraints)
    constraints.gridy = 8
    contentPane.add(minLengthField, constraints)
    constraints.gridy = 9
    contentPane.add(scaffoldingDistanceField, constraints)
    constraints.gridy = 10
    contentPane.add(promoterScoreField, constraints)
    constraints.gridy = 11
    contentPane.add(queryField, constraints)
    constraints.gridx = 2
    constraints.gridy = 0
    constraints.weightx = 0
    constraints.fill = GridBagConstraints.NONE
    constraints.anchor = GridBagConstraints.LINE_END
    contentPane.add(JButton(LocationAction(blastField)), constraints)
    constraints.gridy = 1
    contentPane.add(JButton(LocationAction(genemarkField)), constraints)
    constraints.gridy = 2
    contentPane.add(JButton(LocationAction(transtermField)), constraints)
    constraints.gridy = 3
    contentPane.add(JButton(LocationAction(tRNAscanField)), constraints)
    constraints.gridy = 4
    contentPane.add(JButton(LocationAction(databaseLocationField)), constraints)
    constraints.gridy = 11
    contentPane.add(JButton(LocationAction(queryField)), constraints)

    constraints.gridx = 0
    constraints.gridy = 12
    constraints.anchor = GridBagConstraints.LINE_START
    contentPane.add(JButton(HelpAction()), constraints)
    constraints.gridx = 1
    constraints.anchor = GridBagConstraints.LINE_END
    contentPane.add(JButton(OKAction()), constraints)
    constraints.gridx = 2
    contentPane.add(JButton(CancelAction()), constraints)

    frame.pack()
    frame.setLocationRelativeTo(None)
    frame.setVisible(True)

    while frame.isVisible():
      pass

    self.blastLocation = blastField.getText()
    self.genemarkLocation = genemarkField.getText()
    self.transtermLocation = transtermField.getText()
    self.database = databaseLocationField.getText() + "/" + databaseField.getText()
    self.matrix = matrixField.getText()
    self.eValue = float(eValueField.getText())
    self.minLength = int(minLengthField.getText())
    self.scaffoldingDistance = int(scaffoldingDistanceField.getText())
    self.promoterScoreCutoff = float(promoterScoreField.getText())
    self.sources = [queryField.getText()]