Python Bunch.precreated_name方法代码示例

# 需要导入模块: from galaxy.util.bunch import Bunch [as 别名]
# 或者: from galaxy.util.bunch.Bunch import precreated_name [as 别名]
 def get_uploaded_datasets( self, trans, context, override_name = None, override_info = None ):
     def get_data_file_filename( data_file, override_name = None, override_info = None ):
         dataset_name = override_name
         dataset_info = override_info
         def get_file_name( file_name ):
             file_name = file_name.split( '\\' )[-1]
             file_name = file_name.split( '/' )[-1]
             return file_name
         try:
             # Use the existing file
             if not dataset_name and 'filename' in data_file:
                 dataset_name = get_file_name( data_file['filename'] )
             if not dataset_info:
                 dataset_info = 'uploaded file'
             return Bunch( type='file', path=data_file['local_filename'], name=get_file_name( data_file['filename'] ) )
             #return 'file', data_file['local_filename'], get_file_name( data_file.filename ), dataset_name, dataset_info
         except:
             # The uploaded file should've been persisted by the upload tool action
             return Bunch( type=None, path=None, name=None )
             #return None, None, None, None, None
     def get_url_paste_urls_or_filename( group_incoming, override_name = None, override_info = None ):
         filenames = []
         url_paste_file = group_incoming.get( 'url_paste', None )
         if url_paste_file is not None:
             url_paste = open( url_paste_file, 'r' ).read( 1024 )
             if url_paste.lstrip().lower().startswith( 'http://' ) or url_paste.lstrip().lower().startswith( 'ftp://' ):
                 url_paste = url_paste.replace( '\r', '' ).split( '\n' )
                 for line in url_paste:
                     line = line.strip()
                     if line:
                         if not line.lower().startswith( 'http://' ) and not line.lower().startswith( 'ftp://' ):
                             continue # non-url line, ignore
                         precreated_name = line
                         dataset_name = override_name
                         if not dataset_name:
                             dataset_name = line
                         dataset_info = override_info
                         if not dataset_info:
                             dataset_info = 'uploaded url'
                         yield Bunch( type='url', path=line, name=precreated_name )
                         #yield ( 'url', line, precreated_name, dataset_name, dataset_info )
             else:
                 dataset_name = dataset_info = precreated_name = 'Pasted Entry' #we need to differentiate between various url pastes here
                 if override_name:
                     dataset_name = override_name
                 if override_info:
                     dataset_info = override_info
                 yield Bunch( type='file', path=url_paste_file, name=precreated_name )
                 #yield ( 'file', url_paste_file, precreated_name, dataset_name, dataset_info )
     def get_one_filename( context ):
         data_file = context['file_data']
         url_paste = context['url_paste']
         name = context.get( 'NAME', None )
         info = context.get( 'INFO', None )
         warnings = []
         space_to_tab = False 
         if context.get( 'space_to_tab', None ) not in ["None", None]:
             space_to_tab = True
         file_bunch = get_data_file_filename( data_file, override_name = name, override_info = info )
         if file_bunch.path and url_paste:
             if url_paste.strip():
                 warnings.append( "All file contents specified in the paste box were ignored." )
         else: #we need to use url_paste
             for file_bunch in get_url_paste_urls_or_filename( context, override_name = name, override_info = info ):
                 if file_bunch.path:
                     break
         return file_bunch, warnings
     def get_filenames( context ):
         rval = []
         data_file = context['file_data']
         url_paste = context['url_paste']
         name = context.get( 'NAME', None )
         info = context.get( 'INFO', None )
         space_to_tab = False
         if context.get( 'space_to_tab', None ) not in ["None", None]:
             space_to_tab = True
         warnings = []
         file_bunch = get_data_file_filename( data_file, override_name = name, override_info = info )
         if file_bunch.path:
             file_bunch.space_to_tab = space_to_tab
             rval.append( file_bunch )
         for file_bunch in get_url_paste_urls_or_filename( context, override_name = name, override_info = info ):
             if file_bunch.path:
                 file_bunch.space_to_tab = space_to_tab
                 rval.append( file_bunch )
         return rval
     file_type = self.get_file_type( context )
     d_type = self.get_datatype( trans, context )
     dbkey = context.get( 'dbkey', None )
     writable_files = d_type.writable_files
     writable_files_offset = 0
     groups_incoming = [ None for filename in writable_files ]
     for group_incoming in context.get( self.name, [] ):
         i = int( group_incoming['__index__'] )
         groups_incoming[ i ] = group_incoming
     if d_type.composite_type is not None:
         #handle uploading of composite datatypes
         #Only one Dataset can be created
         dataset = Bunch()
         dataset.type = 'composite'
#.........这里部分代码省略.........