本文整理汇总了Python中galaxy.managers.histories.HistoryManager.annotate方法的典型用法代码示例。如果您正苦于以下问题：Python HistoryManager.annotate方法的具体用法？Python HistoryManager.annotate怎么用？Python HistoryManager.annotate使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类galaxy.managers.histories.HistoryManager的用法示例。
在下文中一共展示了HistoryManager.annotate方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: HistoryManagerTestCase
# 需要导入模块: from galaxy.managers.histories import HistoryManager [as 别名]
# 或者: from galaxy.managers.histories.HistoryManager import annotate [as 别名]
class HistoryManagerTestCase(BaseTestCase):
def set_up_managers(self):
super(HistoryManagerTestCase, self).set_up_managers()
self.history_manager = HistoryManager(self.app)
self.hda_manager = hdas.HDAManager(self.app)
def add_hda_to_history(self, history, **kwargs):
dataset = self.hda_manager.dataset_manager.create()
hda = self.hda_manager.create(history=history, dataset=dataset, **kwargs)
return hda
def test_base(self):
user2 = self.user_manager.create(**user2_data)
user3 = self.user_manager.create(**user3_data)
self.log("should be able to create a new history")
history1 = self.history_manager.create(name='history1', user=user2)
self.assertIsInstance(history1, model.History)
self.assertEqual(history1.name, 'history1')
self.assertEqual(history1.user, user2)
self.assertEqual(history1, self.trans.sa_session.query(model.History).get(history1.id))
self.assertEqual(history1,
self.trans.sa_session.query(model.History).filter(model.History.name == 'history1').one())
self.assertEqual(history1,
self.trans.sa_session.query(model.History).filter(model.History.user == user2).one())
history2 = self.history_manager.copy(history1, user=user3)
self.log("should be able to query")
histories = self.trans.sa_session.query(model.History).all()
self.assertEqual(self.history_manager.one(filters=(model.History.id == history1.id)), history1)
self.assertEqual(self.history_manager.list(), histories)
self.assertEqual(self.history_manager.by_id(history1.id), history1)
self.assertEqual(self.history_manager.by_ids([history2.id, history1.id]), [history2, history1])
self.log("should be able to limit and offset")
self.assertEqual(self.history_manager.list(limit=1), histories[0:1])
self.assertEqual(self.history_manager.list(offset=1), histories[1:])
self.assertEqual(self.history_manager.list(limit=1, offset=1), histories[1:2])
self.assertEqual(self.history_manager.list(limit=0), [])
self.assertEqual(self.history_manager.list(offset=3), [])
self.log("should be able to order")
history3 = self.history_manager.create(name="history3", user=user2)
name_first_then_time = (model.History.name, sqlalchemy.desc(model.History.create_time))
self.assertEqual(self.history_manager.list(order_by=name_first_then_time),
[history2, history1, history3])
def test_copy(self):
user2 = self.user_manager.create(**user2_data)
user3 = self.user_manager.create(**user3_data)
self.log("should be able to copy a history (and it's hdas)")
history1 = self.history_manager.create(name='history1', user=user2)
tags = [u'tag-one']
annotation = u'history annotation'
self.history_manager.set_tags(history1, tags, user=user2)
self.history_manager.annotate(history1, annotation, user=user2)
hda = self.add_hda_to_history(history1, name='wat')
hda_tags = [u'tag-one', u'tag-two']
hda_annotation = u'annotation'
self.hda_manager.set_tags(hda, hda_tags, user=user2)
self.hda_manager.annotate(hda, hda_annotation, user=user2)
history2 = self.history_manager.copy(history1, user=user3)
self.assertIsInstance(history2, model.History)
self.assertEqual(history2.user, user3)
self.assertEqual(history2, self.trans.sa_session.query(model.History).get(history2.id))
self.assertEqual(history2.name, history1.name)
self.assertNotEqual(history2, history1)
copied_hda = history2.datasets[0]
copied_hda_tags = self.hda_manager.get_tags(copied_hda)
self.assertEqual(sorted(hda_tags), sorted(copied_hda_tags))
copied_hda_annotation = self.hda_manager.annotation(copied_hda)
self.assertEqual(hda_annotation, copied_hda_annotation)
def test_has_user(self):
owner = self.user_manager.create(**user2_data)
non_owner = self.user_manager.create(**user3_data)
item1 = self.history_manager.create(user=owner)
item2 = self.history_manager.create(user=owner)
self.history_manager.create(user=non_owner)
self.log("should be able to list items by user")
user_histories = self.history_manager.by_user(owner)
self.assertEqual(user_histories, [item1, item2])
def test_ownable(self):
owner = self.user_manager.create(**user2_data)
non_owner = self.user_manager.create(**user3_data)
item1 = self.history_manager.create(user=owner)
self.log("should be able to poll whether a given user owns an item")
self.assertTrue(self.history_manager.is_owner(item1, owner))
#.........这里部分代码省略.........