本文整理汇总了Python中elastic.search.ElasticQuery.query_match方法的典型用法代码示例。如果您正苦于以下问题：Python ElasticQuery.query_match方法的具体用法？Python ElasticQuery.query_match怎么用？Python ElasticQuery.query_match使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类elastic.search.ElasticQuery的用法示例。
在下文中一共展示了ElasticQuery.query_match方法的4个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: _find_snp_position
# 需要导入模块: from elastic.search import ElasticQuery [as 别名]
# 或者: from elastic.search.ElasticQuery import query_match [as 别名]
def _find_snp_position(snp_track, name):
if snp_track is None:
query = ElasticQuery.query_match("id", name)
elastic = Search(query, idx=ElasticSettings.idx('MARKER'))
snpResult = elastic.get_json_response()
if(len(snpResult['hits']['hits'])) > 0:
snp = snpResult['hits']['hits'][0]['_source']
chrom = snp['seqid'].replace('chr', "")
position = snp['start']
return {'chr': chrom, 'start': (position-1), 'end': position, 'name': name}
else:
mo = re.match(r"(.*)-(.*)", snp_track)
(group, track) = mo.group(1, 2)
try:
snp_track_idx = ElasticSettings.idx('CP_STATS_'+group.upper(), snp_track.upper())
except SettingsError:
snp_track_idx = ElasticSettings.idx('CP_STATS_'+group.upper())+"/"+track
query = ElasticQuery.query_match("name", name)
elastic = Search(query, idx=snp_track_idx)
snpResult = elastic.get_json_response()
if(len(snpResult['hits']['hits'])) > 0:
snp = snpResult['hits']['hits'][0]['_source']
chrom = snp['seqid'].replace('chr', "")
position = snp['start']
return {'chr': chrom, 'start': (position-1), 'end': position, 'name': name}
return {'error': 'Marker '+name+' does not exist in the currently selected dataset'}示例2: region_page
# 需要导入模块: from elastic.search import ElasticQuery [as 别名]
# 或者: from elastic.search.ElasticQuery import query_match [as 别名]
def region_page(request, region):
''' Region elastic'''
query = ElasticQuery.query_match("attr.region_id", region)
elastic = Search(query, idx=ElasticSettings.idx(name='REGION'))
context = elastic.get_result()
context['title'] = "Region"
print(context)
return render(request, 'region/region.html', context,
content_type='text/html')示例3: _find_snp_position
# 需要导入模块: from elastic.search import ElasticQuery [as 别名]
# 或者: from elastic.search.ElasticQuery import query_match [as 别名]
def _find_snp_position(snp_track, name):
mo = re.match(r"(.*)-(.*)", snp_track)
(group, track) = mo.group(1, 2)
snp_track_idx = getattr(chicp_settings, 'CHICP_IDX').get(group).get('INDEX')
snp_track_type = ''
if getattr(chicp_settings, 'CHICP_IDX').get(group).get('TRACKS').get(snp_track):
snp_track_type = getattr(chicp_settings, 'CHICP_IDX').get(group).get('TRACKS') \
.get(snp_track).get('TYPE')
else:
snp_track_type = track
query = ElasticQuery.query_match("name", name)
elastic = Search(query, idx=snp_track_idx+'/'+snp_track_type)
snpResult = elastic.get_result()
if (len(snpResult['data']) > 0):
chrom = snpResult['data'][0]['seqid'].replace('chr', "")
position = snpResult['data'][0]['end']
return {'chr': chrom, 'start': (position-1), 'end': position, 'name': name}
return {'error': 'Marker '+name+' does not exist in the currently selected dataset'}示例4: show_es_gene_section
# 需要导入模块: from elastic.search import ElasticQuery [as 别名]
# 或者: from elastic.search.ElasticQuery import query_match [as 别名]
def show_es_gene_section(gene_symbol=None, seqid=None,
start_pos=None, end_pos=None):
''' Template inclusion tag to render a gene section given a
chado gene feature. '''
seqid = str(seqid).replace('chr', '')
if gene_symbol is not None:
''' gene symbol query'''
query = ElasticQuery.query_match("symbol", gene_symbol)
elif end_pos is None:
''' start and end are same, range query for snp'''
query_bool = BoolQuery(must_arr=[Query.match("chromosome", seqid),
RangeQuery("start", lte=start_pos),
RangeQuery("stop", gte=start_pos)])
query = ElasticQuery.bool(query_bool)
else:
''' start and end are same, range query for snp'''
query_bool = BoolQuery(must_arr=[Query.match("chromosome", seqid),
RangeQuery("start", gte=start_pos),
RangeQuery("stop", lte=end_pos)])
query = ElasticQuery.bool(query_bool)
elastic = Search(query, idx=ElasticSettings.idx(name='GENE'))
return {'es_genes': elastic.search().docs}