本文整理汇总了Python中django.http.request.HttpRequest.FILES['refGenomeFile']方法的典型用法代码示例。如果您正苦于以下问题：Python HttpRequest.FILES['refGenomeFile']方法的具体用法？Python HttpRequest.FILES['refGenomeFile']怎么用？Python HttpRequest.FILES['refGenomeFile']使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类django.http.request.HttpRequest的用法示例。
在下文中一共展示了HttpRequest.FILES['refGenomeFile']方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_upload_long_id_genbank
# 需要导入模块: from django.http.request import HttpRequest [as 别名]
# 或者: from django.http.request.HttpRequest import FILES['refGenomeFile'] [as 别名]
def test_upload_long_id_genbank(self):
project = self.common_entities['project']
ref_genome_label = 'dirty_upload'
request = HttpRequest()
request.POST = {
'projectUid': project.uid,
'refGenomeLabel': ref_genome_label,
'importFileFormat': 'genbank'
}
request.method = 'POST'
request.user = self.common_entities['user']
authenticate(username=TEST_USERNAME, password=TEST_PASSWORD)
self.assertTrue(request.user.is_authenticated())
request.FILES['refGenomeFile'] = UploadedFile(
file=open(LONG_ID_GENBANK),
name='dirty_genbank.gb')
response = create_ref_genome_from_browser_upload(request)
self.assertEqual(STATUS_CODE__SUCCESS, response.status_code)
self.assertFalse(json.loads(response.content).get('error', False))示例2: test_run_alignment_with_spaces_in_genbank_filename
# 需要导入模块: from django.http.request import HttpRequest [as 别名]
# 或者: from django.http.request.HttpRequest import FILES['refGenomeFile'] [as 别名]
def test_run_alignment_with_spaces_in_genbank_filename(self):
project = self.common_entities['project']
ref_genome_label = 'dirty_upload'
request = HttpRequest()
request.POST = {
'projectUid': project.uid,
'refGenomeLabel': ref_genome_label,
'importFileFormat': 'genbank'
}
request.method = 'POST'
request.user = self.common_entities['user']
authenticate(username=TEST_USERNAME, password=TEST_PASSWORD)
self.assertTrue(request.user.is_authenticated())
request.FILES['refGenomeFile'] = UploadedFile(
file=open(TEST_GENBANK),
name='dirty_genbank (spaces).gb')
response = create_ref_genome_from_browser_upload(request)
self.assertEqual(STATUS_CODE__SUCCESS, response.status_code)
self.assertFalse(json.loads(response.content).get('error', False))
# Get reference genome
ref_genome = ReferenceGenome.objects.get(
project=project,
label=ref_genome_label)
# Create sample model
sample = ExperimentSample.objects.create(
project=project,
label='test_sample')
# Add fastq datasets to sample
add_dataset_to_entity(
sample,
Dataset.TYPE.FASTQ1,
Dataset.TYPE.FASTQ1,
filesystem_location=TEST_DIRTY_FQ_1)
# Add fastq datasets to sample
add_dataset_to_entity(
sample,
Dataset.TYPE.FASTQ2,
Dataset.TYPE.FASTQ2,
filesystem_location=TEST_DIRTY_FQ_2)
# Run alignment of sample to reference
alignment_group_label = 'test_alignment'
sample_list = [sample]
result = run_pipeline(
alignment_group_label, ref_genome, sample_list)
alignment_group = result[0]
alignment_async_result = result[1]
variant_calling_async_result = result[2]
alignment_async_result.get()
variant_calling_async_result.get()
alignment_group = AlignmentGroup.objects.get(uid=alignment_group.uid)
self.assertEqual(AlignmentGroup.STATUS.COMPLETED,
alignment_group.status)