本文整理汇总了Python中dark.titles.TitlesAlignments.hsps方法的典型用法代码示例。如果您正苦于以下问题：Python TitlesAlignments.hsps方法的具体用法？Python TitlesAlignments.hsps怎么用？Python TitlesAlignments.hsps使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类dark.titles.TitlesAlignments的用法示例。
在下文中一共展示了TitlesAlignments.hsps方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: testHsps
# 需要导入模块: from dark.titles import TitlesAlignments [as 别名]
# 或者: from dark.titles.TitlesAlignments import hsps [as 别名]
def testHsps(self):
"""
The hsps function must yield all the hsps for all titles in a
TitlesAlignments instance.
"""
mockOpener = mockOpen(read_data=(
dumps(PARAMS) + '\n' + dumps(RECORD0) + '\n' +
dumps(RECORD1) + '\n' + dumps(RECORD2) + '\n'))
with patch.object(builtins, 'open', mockOpener):
reads = Reads()
reads.add(Read('id0', 'A' * 70))
reads.add(Read('id1', 'A' * 70))
reads.add(Read('id2', 'A' * 70))
readsAlignments = BlastReadsAlignments(reads, 'file.json')
titlesAlignments = TitlesAlignments(readsAlignments)
result = list(titlesAlignments.hsps())
self.assertEqual(
sorted([HSP(20), HSP(25), HSP(20), HSP(20), HSP(20)]),
sorted(result))