Python Connector.submitJobLocally方法代码示例

# 需要导入模块: from connector import Connector [as 别名]
# 或者: from connector.Connector import submitJobLocally [as 别名]

#.........这里部分代码省略.........
            else:
                self.jobname_str = str(self.jobname.text())
            
        if not Prj2sinWrap.createCommand(self):  # returns True if cmd was created
            return 
        
        if self.print_cmd.isChecked():  # prints full CLS if checked 
            if not self.debugTextField():
                 return
        
        if self.job.submitJob(Prj2sinWrap.cmd):
            self.statusBar().showMessage('Job successfully submitted: '+ \
                                         strftime('%H:%M:%S - %x'))
            
            
    def calcSingleSlice(self):
        '''
        This method is launched when pressing "Single Slice" button
        from the GUI. It's similar to "submitToCluster", however, it
        doesn't utilize the "createCommand" method. Instead, it creates
        the command line string (CLS) by calling
        "createSingleSliceCommand" and in the end displays the image.
        '''
        Prj2sinWrap.createSingleSliceCommand(self)

        if self.print_cmd.isChecked():
            if not self.debugTextField():
                 return

        # Create path for reconstructed single slice image
        self.dirs.createSingleSliceImagePath()
        
        if self.openinfiji.isChecked():
            self.job.submitJobLocallyAndWait('fiji -eval \"close(\\"'+ \
                                    str(self.prefix.text())+'*\\");\"')
        
        if self.dirs.checkIfFileExist(self.dirs.img_reco):
            self.job.submitJobLocallyAndWait('rm '+self.dirs.img_reco)
        
        # after all checks completed, singleSliceFunc is called and we wait until image is done
        self.job.submitJob(Prj2sinWrap.cmd)
        
        for kk in range(30):
            if self.dirs.checkIfFileExist(self.dirs.img_reco):
                break
            else:
                sleep(0.5)
        else:
            self.displayErrorMessage('No reconstructed slice found', \
                'After waiting 15 sec the reconstructed slice was not found')
            return
                                    
        # we display the image
        if self.openinfiji.isChecked():
            self.job.submitJobLocally('fiji -eval \"open(\\"'+self.dirs.img_reco+'\\")\"')
        else:
            self.displayImageBig(self.dirs.img_reco)
        
        
    def checkComputingLocation(self):
        '''
        This method makes sure that the radiobox from where GRecoMan is
        run, is checked because it is needed for creating the correct
        directory paths.
        '''
        if not self.afsaccount.isChecked() and not self.cons2.isChecked():

# 需要导入模块: from connector import Connector [as 别名]
# 或者: from connector.Connector import submitJobLocally [as 别名]

#.........这里部分代码省略.........
        ParameterWrap()(self,'fltp_fromtif','',['cprdirectory'],False)
        
 
    def submitToCluster(self):
        '''
        method that launches all the checks and if successful submits the
        command to cons-2 for starting the job
        '''
        if not self.checkAllParamters():
            return
        
        # (1) Create command line string
        if not str(self.jobname.text()):
            self.jobname_str = 'GRecoM'
        else:
            self.jobname_str = str(self.jobname.text())
            
        self.cmd = ''
        if not self.createCommand():
            return
        
        if self.print_cmd.isChecked():
            if not self.displayYesNoMessage('Submit to cons-2?', self.cmd):
                return
        
        # (2) run SSH-connector and check all account credentials
        if not self.job.performInitalCheck():
            return
        
        # (3) run SSh-connector to launch the job
        if self.afsaccount.isChecked():
            self.job.submitJobViaGateway(self.cmd+'\n','x02da-gw','x02da-cons-2')
        elif self.cons2.isChecked():
            self.job.submitJobLocally(self.cmd)
            
            
    def calcSingleSlice(self):
        '''
        method for renconstructing a single slice for a given sinogram.
        '''
        if not str(self.sinograms.currentText()):
            self.displayErrorMessage('No sinogram selected', 'Select the Sinogram directory and press Enter. Then select one to be reconstructed.')
            return
        
        ## (1) check whether we have defined the location from where we run the reconstruction
        if not self.checkComputingLocation():
            return
        
        ## (2) before calculating on x02da-cons-2, we need to rewrite the path of the sino dir
        if self.afsaccount.isChecked():
            single_sino = self.dirs.afsPath2Cons2(self.sinogramdirectory.text())
        elif self.cons2.isChecked():
            single_sino = str(self.sinogramdirectory.text())

        ## (3) create the command line string for single slice reconstruction
        self.cmd_string = 'python /afs/psi.ch/project/tomcatsvn/executeables/grecoman/externals/singleSliceFunc.py '
        
        combos_single = ['filter','geometry']  # removed: 'outputtype' (let's always have DMP!)
        for combo in combos_single:
            if ParameterWrap.par_dict[combo].performCheck():
                self.cmd_string += ParameterWrap.par_dict[combo].flag+' '+self.getComboBoxContent(combo)+' ' 
        
        if self.zingeron.isChecked():
            self.setZingerParameters()
        
        optional_single = ['cutofffrequency','edgepadding','centerofrotation','rotationangle']