本文整理汇总了Python中cogent.seqsim.searchpath.SearchPath._check_forbidden_seqs方法的典型用法代码示例。如果您正苦于以下问题：Python SearchPath._check_forbidden_seqs方法的具体用法？Python SearchPath._check_forbidden_seqs怎么用？Python SearchPath._check_forbidden_seqs使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类cogent.seqsim.searchpath.SearchPath的用法示例。
在下文中一共展示了SearchPath._check_forbidden_seqs方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_check_forbidden_seqs_none
# 需要导入模块: from cogent.seqsim.searchpath import SearchPath [as 别名]
# 或者: from cogent.seqsim.searchpath.SearchPath import _check_forbidden_seqs [as 别名]
def test_check_forbidden_seqs_none(self):
"""Should return False if path includes no forbidden seqs"""
#a seq that isn't in the standard fixed forbidden lib
allowed_seq = ["C", "U", "A", "T"]
test = SearchPath(SearchPathHelper.alphabets, \
SearchPathHelper.standard_forbid_seq)
test._add_node(SearchNode(SearchNodeHelper.alphabet))
#add more values, and cheat so as to make them something known
for known_val in allowed_seq:
curr_node = SearchNode(SearchNodeHelper.alphabet)
curr_node._options[0] = known_val #torque the node's innards
test._add_node(curr_node)
#next bad_val
real_result = test._check_forbidden_seqs()
self.assertEquals(real_result, False) 示例2: test_check_forbidden_seqs_fixed
# 需要导入模块: from cogent.seqsim.searchpath import SearchPath [as 别名]
# 或者: from cogent.seqsim.searchpath.SearchPath import _check_forbidden_seqs [as 别名]
def test_check_forbidden_seqs_fixed(self):
"""Should return True if path includes a fixed forbidden seq"""
forbidden_seq = ["G", "U", "A"]
user_input = ["".join(forbidden_seq)]
user_input.extend(SearchPathHelper.standard_forbid_seq)
test = SearchPath(SearchPathHelper.alphabets, user_input)
test._add_node(SearchNode(SearchNodeHelper.alphabet))
#add more values, and cheat so as to make them something forbidden
for bad_val in forbidden_seq:
curr_node = SearchNode(SearchNodeHelper.alphabet)
curr_node._options[0] = bad_val #torque the node's innards
test._add_node(curr_node)
#next bad_val
real_result = test._check_forbidden_seqs()
self.assertEquals(real_result, True)