Python Cutout.version方法代码示例

# 需要导入模块: from bossspatialdb.views import Cutout [as 别名]
# 或者: from bossspatialdb.views.Cutout import version [as 别名]
    def test_basic_resource_get_downsampled_extent_dims_isotropic(self):
        """Test downsample extent isotropic

        Returns:
            None

        """
        url = '/' + version + '/cutout/col1/exp_iso/channel1/0/0:5/0:6/0:2/'

        # Create the request
        request = self.rf.get(url)
        force_authenticate(request, user=self.user)
        drfrequest = Cutout().initialize_request(request)
        drfrequest.version = version

        request_args = {
            "service": "cutout",
            "collection_name": "col1",
            "experiment_name": "exp_iso",
            "channel_name": "channel1",
            "resolution": 0,
            "x_args": "0:5",
            "y_args": "0:6",
            "z_args": "0:2",
            "time_args": None
        }

        req = BossRequest(drfrequest, request_args)
        resource = BossResourceDjango(req)

        extent_dims = resource.get_downsampled_extent_dims()
        self.assertEqual(len(extent_dims), 8)
        self.assertEqual(extent_dims[0], [2000, 5000, 200])
        self.assertEqual(extent_dims[1], [1000, 2500, 100])
        self.assertEqual(extent_dims[3], [250, 625, 25])

# 需要导入模块: from bossspatialdb.views import Cutout [as 别名]
# 或者: from bossspatialdb.views.Cutout import version [as 别名]
    def test_basic_resource_get_iso_level_isotropic(self):
        """Test get iso level isotropic

        Returns:
            None

        """
        url = '/' + version + '/cutout/col1/exp_iso/channel1/0/0:5/0:6/0:2/'

        # Create the request
        request = self.rf.get(url)
        force_authenticate(request, user=self.user)
        drfrequest = Cutout().initialize_request(request)
        drfrequest.version = version

        request_args = {
            "service": "cutout",
            "collection_name": "col1",
            "experiment_name": "exp_iso",
            "channel_name": "channel1",
            "resolution": 0,
            "x_args": "0:5",
            "y_args": "0:6",
            "z_args": "0:2",
            "time_args": None
        }

        req = BossRequest(drfrequest, request_args)
        resource = BossResourceDjango(req)

        self.assertEqual(resource.get_isotropic_level(), 0)

# 需要导入模块: from bossspatialdb.views import Cutout [as 别名]
# 或者: from bossspatialdb.views.Cutout import version [as 别名]
    def test_request_cutout_invalid_resolution(self):
        """
        Test initialization of cutout requests for an invalid datamodel - experiment  does not exist for the collection
        :return:
        """
        url = '/' + version + '/cutout/col2/exp1/channel1/92/0:5/0:6/0:2/'
        col = 'col1'
        exp = 'exp1'
        channel = 'channel1'

        # Create the request
        request = self.rf.get(url)
        force_authenticate(request, user=self.user)
        drfrequest = Cutout().initialize_request(request)
        drfrequest.version = version

        # Create the request dict
        request_args = {
            "service": "cutout",
            "version": version,
            "collection_name": col,
            "experiment_name": exp,
            "channel_name": channel,
            "resolution": 92,
            "x_args": "0:5",
            "y_args": "0:6",
            "z_args": "0:2",
            "time_args": None
        }

        with self.assertRaises(BossError):
            BossRequest(drfrequest, request_args)

# 需要导入模块: from bossspatialdb.views import Cutout [as 别名]
# 或者: from bossspatialdb.views.Cutout import version [as 别名]
    def test_request_cutout_invalid_zargs(self):
        """
        Test initialization of cutout arguments for a invalid cutout request. The x-args are outside the coordinate
        frame
        :return:
        """
        url = '/' + version + '/cutout/col1/exp1/channel1/0/0:6/0:6/0:1040/'

        # Create the request
        request = self.rf.get(url)
        force_authenticate(request, user=self.user)
        drfrequest = Cutout().initialize_request(request)
        drfrequest.version = version

        # Create the request dict
        request_args = {
            "service": "cutout",
            "collection_name": "col1",
            "experiment_name": "exp1",
            "channel_name": "channel1",
            "resolution": 2,
            "x_args": "0:6",
            "y_args": "0:6",
            "z_args": "0:1040",
            "time_args": None
        }
        with self.assertRaises(BossError):
            BossRequest(drfrequest, request_args)

# 需要导入模块: from bossspatialdb.views import Cutout [as 别名]
# 或者: from bossspatialdb.views.Cutout import version [as 别名]
    def test_request_cutout_filter_no_time(self):
        """
        Test initialization of boss_key for a time sample range
        :return:
        """
        url = '/' + version + '/cutout/col1/exp1/channel3/2/0:5/0:6/0:2/?filter=1,2,3,4'
        expected_ids = np.array([1, 2, 3, 4])
        expected_ids = expected_ids.astype(np.uint64)

        # Create the request
        request = self.rf.get(url)
        force_authenticate(request, user=self.user)
        drfrequest = Cutout().initialize_request(request)
        drfrequest.version = version

        # Create the request dict
        request_args = {
            "service": "cutout",
            "version": version,
            "collection_name": 'col1',
            "experiment_name": 'exp1',
            "channel_name": 'channel3',
            "resolution": 2,
            "x_args": "0:5",
            "y_args": "0:6",
            "z_args": "0:2",
            "time_args": None,
            "ids": '1,2,3,4'
        }

        ret = BossRequest(drfrequest, request_args)
        self.assertEqual(np.array_equal(ret.get_filter_ids(),expected_ids),True)

# 需要导入模块: from bossspatialdb.views import Cutout [as 别名]
# 或者: from bossspatialdb.views.Cutout import version [as 别名]
    def test_request_cutout_lookupkey(self):
        """
        Test initialization of boss_key for a time sample range
        :return:
        """
        url = '/' + version + '/cutout/col1/exp1/channel1/2/0:5/0:6/0:2/1:5/'

        # Create the request
        request = self.rf.get(url)
        force_authenticate(request, user=self.user)
        drfrequest = Cutout().initialize_request(request)
        drfrequest.version = version

        # Create the request dict
        request_args = {
            "service": "cutout",
            "version": version,
            "collection_name": 'col1',
            "experiment_name": 'exp1',
            "channel_name": 'channel1',
            "resolution": 2,
            "x_args": "0:5",
            "y_args": "0:6",
            "z_args": "0:2",
            "time_args": "1:5"
        }

        ret = BossRequest(drfrequest, request_args)
        col_id = ret.collection.pk
        exp_id = ret.experiment.pk
        channel_id = ret.channel.pk
        base_lookup = str(col_id) + '&' + str(exp_id) + '&' + str(channel_id)
        self.assertEqual(base_lookup, ret.get_lookup_key())

# 需要导入模块: from bossspatialdb.views import Cutout [as 别名]
# 或者: from bossspatialdb.views.Cutout import version [as 别名]
    def test_request_cutout_init_cutoutargs_time_range(self):
        """
        Test initialization of boss_key for a time sample range
        :return:
        """
        url = '/' + version + '/cutout/col1/exp1/channel1/2/0:5/0:6/0:2/1:5/'

        # Create the request
        request = self.rf.get(url)
        force_authenticate(request, user=self.user)
        drfrequest = Cutout().initialize_request(request)
        drfrequest.version = version

        # Create the request dict
        request_args = {
            "service": "cutout",
            "version": version,
            "collection_name": 'col1',
            "experiment_name": 'exp1',
            "channel_name": 'channel1',
            "resolution": 2,
            "x_args": "0:5",
            "y_args": "0:6",
            "z_args": "0:2",
            "time_args": "1:5"
        }

        ret = BossRequest(drfrequest, request_args)
        time = ret.get_time()
        self.assertEqual(time, range(1, 5))
        self.assertEqual(ret.time_request, True)

# 需要导入模块: from bossspatialdb.views import Cutout [as 别名]
# 或者: from bossspatialdb.views.Cutout import version [as 别名]
    def test_request_cutout_init_cutoutargs_channel(self):
        """
        Test initialization of cutout arguments for a cutout request
        :return:
        """
        url = '/' + version + '/cutout/col1/exp1/channel1/2/0:5/0:6/0:2/'

        res = 2
        (x_start, x_stop) = (0, 5)
        (y_start, y_stop) = (0, 6)
        (z_start, z_stop) = (0, 2)

        # Create the request
        request = self.rf.get(url)
        force_authenticate(request, user=self.user)
        drfrequest = Cutout().initialize_request(request)
        drfrequest.version = version

        # Create the request dict
        request_args = {
            "service": "cutout",
            "version": version,
            "collection_name": 'col1',
            "experiment_name": 'exp1',
            "channel_name": 'channel1',
            "resolution": 2,
            "x_args": "0:5",
            "y_args": "0:6",
            "z_args": "0:2",
            "time_args": None
        }
        ret = BossRequest(drfrequest, request_args)

        self.assertEqual(ret.get_resolution(), res)
        self.assertEqual(ret.get_x_start(), x_start)
        self.assertEqual(ret.get_x_stop(), x_stop)
        self.assertEqual(ret.get_x_span(), x_stop - x_start)

        self.assertEqual(ret.get_y_start(), y_start)
        self.assertEqual(ret.get_y_stop(), y_stop)
        self.assertEqual(ret.get_y_span(), y_stop - y_start)

        self.assertEqual(ret.get_z_start(), z_start)
        self.assertEqual(ret.get_z_stop(), z_stop)
        self.assertEqual(ret.get_z_span(), z_stop - z_start)

# 需要导入模块: from bossspatialdb.views import Cutout [as 别名]
# 或者: from bossspatialdb.views.Cutout import version [as 别名]
    def test_request_cutout_invalid_deleted_channel(self):
        """
        Test initialization of cutout requests for channel that was just deleted
        """
        # Post a new channel
        url = '/' + version + '/collection/col1/experiment/exp1/channel/channel33/'
        data = {'description': 'This is a new channel', 'type': 'annotation', 'datatype': 'uint64',
                'sources': ['channel1'], 'related': ['channel2']}
        response = self.client.post(url, data=data)
        self.assertEqual(response.status_code, 201)

        url = '/' + version + '/collection/col1/experiment/exp1/channel/channel33'
        response = self.client.delete(url)
        self.assertEqual(response.status_code, 204)

        url = '/' + version + '/cutout/col2/exp1/channel33/0/0:5/0:6/0:2/'
        col = 'col1'
        exp = 'exp1'
        channel = 'channel33'

        # Create the request
        request = self.rf.get(url)
        force_authenticate(request, user=self.user)
        drfrequest = Cutout().initialize_request(request)
        drfrequest.version = version

        # Create the request dict
        request_args = {
            "service": "cutout",
            "version": version,
            "collection_name": col,
            "experiment_name": exp,
            "channel_name": channel,
            "resolution": 0,
            "x_args": "0:5",
            "y_args": "0:6",
            "z_args": "0:2",
            "time_args": None
        }

        with self.assertRaises(BossError):
            BossRequest(drfrequest, request_args)

# 需要导入模块: from bossspatialdb.views import Cutout [as 别名]
# 或者: from bossspatialdb.views.Cutout import version [as 别名]
    def test_basic_resource_get_downsampled_voxel_dims_anisotropic_iso(self):
        """Test downsample voxel dims anisotropic with iso flag

        Returns:
            None

        """
        url = '/' + version + '/cutout/col1/exp_aniso/channel1/0/0:5/0:6/0:2/'

        # Create the request
        request = self.rf.get(url)
        force_authenticate(request, user=self.user)
        drfrequest = Cutout().initialize_request(request)
        drfrequest.version = version

        request_args = {
            "service": "cutout",
            "collection_name": "col1",
            "experiment_name": "exp_aniso",
            "channel_name": "channel1",
            "resolution": 0,
            "x_args": "0:5",
            "y_args": "0:6",
            "z_args": "0:2",
            "time_args": None
        }

        req = BossRequest(drfrequest, request_args)
        resource = BossResourceDjango(req)

        voxel_dims = resource.get_downsampled_voxel_dims(iso=True)
        self.assertEqual(len(voxel_dims), 8)
        self.assertEqual(voxel_dims[0], [4, 4, 35])
        self.assertEqual(voxel_dims[1], [8, 8, 35])
        self.assertEqual(voxel_dims[2], [16, 16, 35])
        self.assertEqual(voxel_dims[3], [32, 32, 35])
        self.assertEqual(voxel_dims[4], [64, 64, 70])
        self.assertEqual(voxel_dims[5], [128, 128, 140])

# 需要导入模块: from bossspatialdb.views import Cutout [as 别名]
# 或者: from bossspatialdb.views.Cutout import version [as 别名]
    def test_request_cutout_init_channel(self):
        """
        Test initialization of cutout requests for the datamodel
        :return:
        """
        url = '/' + version + '/cutout/col1/exp1/channel1/2/0:5/0:6/0:2/'
        col = 'col1'
        exp = 'exp1'
        channel = 'channel1'
        boss_key = 'col1&exp1&channel1'

        # Create the request
        request = self.rf.get(url)
        force_authenticate(request, user=self.user)
        drfrequest = Cutout().initialize_request(request)
        drfrequest.version = version

        # Create the request dict
        request_args = {
            "service": "cutout",
            "version": version,
            "collection_name": col,
            "experiment_name": exp,
            "channel_name": channel,
            "resolution": 2,
            "x_args": "0:5",
            "y_args": "0:6",
            "z_args": "0:2",
            "time_args": None
        }

        ret = BossRequest(drfrequest, request_args)
        self.assertEqual(ret.get_collection(), col)
        self.assertEqual(ret.get_experiment(), exp)
        self.assertEqual(ret.get_channel(), channel)
        self.assertEqual(ret.get_boss_key(), boss_key)
        self.assertEqual(ret.time_request, False)

# 需要导入模块: from bossspatialdb.views import Cutout [as 别名]
# 或者: from bossspatialdb.views.Cutout import version [as 别名]
    def setUp(self):
        """Setup test by inserting data model items into the database"""
        self.rf = APIRequestFactory()
        dbsetup = SetupTestDB()
        self.user = dbsetup.create_user()
        dbsetup.add_role("resource-manager", self.user)
        self.client.force_login(self.user)
        dbsetup.insert_test_data()
        dbsetup.insert_iso_data()

        url = '/' + version + '/collection/col1/experiment/exp1/channel/channel33/'
        data = {'description': 'This is a new channel', 'type': 'annotation', 'datatype': 'uint8',
                'sources': ['channel1'],
                'related': ['channel2', 'channel3']}
        response = self.client.post(url, data=data)

        url = '/' + version + '/cutout/col1/exp1/channel1/2/0:5/0:6/0:2/'

        # Create the request
        request = self.rf.get(url)
        force_authenticate(request, user=self.user)
        drfrequest = Cutout().initialize_request(request)
        drfrequest.version = version

        # Create the request dict
        request_args = {
            "service": "cutout",
            "collection_name": "col1",
            "experiment_name": "exp1",
            "channel_name": "channel1",
            "resolution": 2,
            "x_args": "0:5",
            "y_args": "0:6",
            "z_args": "0:2",
            "time_args": None
        }

        self.request_channel = BossRequest(drfrequest, request_args)

        # Setup Layer
        url = '/' + version + '/cutout/col1/exp1/layer1/2/0:5/0:6/0:2/'

        # Create the request
        request = self.rf.get(url)
        force_authenticate(request, user=self.user)
        drfrequest = Cutout().initialize_request(request)
        drfrequest.version = version

        # Create the request dict
        request_args = {
            "service": "cutout",
            "collection_name": "col1",
            "experiment_name": "exp1",
            "channel_name": "layer1",
            "resolution": 2,
            "x_args": "0:5",
            "y_args": "0:6",
            "z_args": "0:2",
            "time_args": None
        }

        self.request_annotation = BossRequest(drfrequest, request_args)

        url = '/' + version + '/cutout/col1/exp1/channel33/2/0:5/0:6/0:2/'

        # Create the request
        request = self.rf.get(url)
        force_authenticate(request, user=self.user)
        drfrequest = Cutout().initialize_request(request)
        drfrequest.version = version

        # Create the request dict
        request_args = {
            "service": "cutout",
            "collection_name": "col1",
            "experiment_name": "exp1",
            "channel_name": "channel33",
            "resolution": 2,
            "x_args": "0:5",
            "y_args": "0:6",
            "z_args": "0:2",
            "time_args": None
        }

        self.request_channel_links = BossRequest(drfrequest, request_args)