Python EDPluginISPyBv1_4.process方法代码示例

# 需要导入模块: from EDPluginISPyBv1_4 import EDPluginISPyBv1_4 [as 别名]
# 或者: from EDPluginISPyBv1_4.EDPluginISPyBv1_4 import process [as 别名]
    def process(self, _edObject=None):
        """
        Uses ToolsForCollectionWebService for storing the workflow status
        """
        EDPluginISPyBv1_4.process(self)
        self.DEBUG("EDPluginISPyBStoreWorkflowMeshv1_4.process")
        # First get the image ID
        xsDataInputWorkflowMesh = self.getDataInput()

        httpAuthenticatedToolsForCollectionWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
        clientToolsForCollectionWebService = Client(self.strToolsForCollectionWebServiceWsdl,
                                                    transport=httpAuthenticatedToolsForCollectionWebService,
                                                    cache=None)
        workflowMeshWS3VO = clientToolsForCollectionWebService.factory.create('workflowMeshWS3VO')
        workflowMeshWS3VO.workflowId = self.getXSValue(xsDataInputWorkflowMesh.workflowId)
        workflowMeshWS3VO.bestPositionId = self.getXSValue(xsDataInputWorkflowMesh.bestPositionId)
        workflowMeshWS3VO.bestImageId = self.getXSValue(xsDataInputWorkflowMesh.bestImageId)
        workflowMeshWS3VO.value1 = self.getXSValue(xsDataInputWorkflowMesh.value1)
        workflowMeshWS3VO.value2 = self.getXSValue(xsDataInputWorkflowMesh.value2)
        workflowMeshWS3VO.value3 = self.getXSValue(xsDataInputWorkflowMesh.value3)
        workflowMeshWS3VO.value4 = self.getXSValue(xsDataInputWorkflowMesh.value4)
        workflowMeshWS3VO.cartographyPath = self.getXSValue(xsDataInputWorkflowMesh.cartographyPath)
#        print workflowMeshWS3VO
        self.iWorkflowMeshId = clientToolsForCollectionWebService.service.storeOrUpdateWorkflowMesh(workflowMeshWS3VO)
        self.DEBUG("EDPluginISPyBStoreWorkflowMeshv1_4.process: WorkflowId=%d" % self.iWorkflowMeshId)

# 需要导入模块: from EDPluginISPyBv1_4 import EDPluginISPyBv1_4 [as 别名]
# 或者: from EDPluginISPyBv1_4.EDPluginISPyBv1_4 import process [as 别名]
 def process(self, _edObject=None):
     """
     Uses ToolsForCollectionWebService 
     """
     EDPluginISPyBv1_4.process(self)
     self.DEBUG("EDPluginISPyBSetImagesPositionsv1_4.process")
     httpAuthenticatedToolsForCollectionWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
     clientToolsForCollectionWebService = Client(self.strToolsForCollectionWebServiceWsdl,
                                                 transport=httpAuthenticatedToolsForCollectionWebService,
                                                 cache=None)
     # Loop over all positions
     listImagePosition = []
     for xsDataImagePosition in self.dataInput.imagePosition:
         imagePosition = clientToolsForCollectionWebService.factory.create('imagePosition')
         # Get the workflow ID and status
         imagePosition.fileName = os.path.basename(xsDataImagePosition.fileName.path.value)
         imagePosition.fileLocation = os.path.dirname(xsDataImagePosition.fileName.path.value)
         if xsDataImagePosition.jpegFileFullPath is not None:
             imagePosition.jpegFileFullPath = xsDataImagePosition.jpegFileFullPath.path.value
         if xsDataImagePosition.jpegThumbnailFileFullPath is not None:
             imagePosition.jpegThumbnailFileFullPath = xsDataImagePosition.jpegThumbnailFileFullPath.path.value
         listImagePosition.append(imagePosition)
     self.listImageCreation = clientToolsForCollectionWebService.service.setImagesPositions(
                                 listImagePosition=listImagePosition)
     self.DEBUG("EDPluginISPyBSetImagesPositionsv1_4.process: listImageCreation=%r" % self.listImageCreation)

# 需要导入模块: from EDPluginISPyBv1_4 import EDPluginISPyBv1_4 [as 别名]
# 或者: from EDPluginISPyBv1_4.EDPluginISPyBv1_4 import process [as 别名]
 def process(self, _edObject=None):
     """
     Uses ToolsForCollectionWebService for storing the workflow status
     """
     EDPluginISPyBv1_4.process(self)
     self.DEBUG("EDPluginISPyBSetDataCollectionsPositionsv1_4.process")
     httpAuthenticatedToolsForCollectionWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
     clientToolsForCollectionWebService = Client(self.strToolsForCollectionWebServiceWsdl,
                                                 transport=httpAuthenticatedToolsForCollectionWebService,
                                                 cache=None)
     # Loop over all positions
     listDataCollectionPosition = []
     for xsDataDataCollectionPosition in self.dataInput.dataCollectionPosition:
         dataCollectionPosition = clientToolsForCollectionWebService.factory.create('dataCollectionPosition')
         # Get the workflow ID and status
         dataCollectionPosition.fileName = os.path.basename(xsDataDataCollectionPosition.fileName.path.value)
         dataCollectionPosition.fileLocation = os.path.dirname(xsDataDataCollectionPosition.fileName.path.value)
         dataCollectionPosition.startPosition = self.createMotorPosition3VO(clientToolsForCollectionWebService,
                                                                            xsDataDataCollectionPosition.startPosition)
         if xsDataDataCollectionPosition.endPosition is not None:
             dataCollectionPosition.endPosition = self.createMotorPosition3VO(clientToolsForCollectionWebService,
                                                                              xsDataDataCollectionPosition.endPosition)
         else:
             endMotorPosition3VO = None
         listDataCollectionPosition.append(dataCollectionPosition)
     self.listDataCollectionId = clientToolsForCollectionWebService.service.setDataCollectionsPositions(
                                 listDataCollectionPosition=listDataCollectionPosition)
     self.DEBUG("EDPluginISPyBSetDataCollectionsPositionsv1_4.process: DataCollectionId=%r" % self.listDataCollectionId)

# 需要导入模块: from EDPluginISPyBv1_4 import EDPluginISPyBv1_4 [as 别名]
# 或者: from EDPluginISPyBv1_4.EDPluginISPyBv1_4 import process [as 别名]
    def process(self, _edObject=None):
        """
        Uses ToolsForCollectionWebService for storing the workflow status
        """
        EDPluginISPyBv1_4.process(self)
        self.DEBUG("EDPluginISPyBStoreWorkflowv1_4.process")
        # First get the image ID
        xsDataWorkflow = self.getDataInput().getWorkflow()

        httpAuthenticatedToolsForCollectionWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
        clientToolsForCollectionWebService = Client(self.strToolsForCollectionWebServiceWsdl,
                                                    transport=httpAuthenticatedToolsForCollectionWebService,
                                                    cache=None)
        workflow3VO = clientToolsForCollectionWebService.factory.create('workflow3VO')
        workflow3VO.comments = self.getXSValue(xsDataWorkflow.comments)
        workflow3VO.logFilePath = self.getXSValue(xsDataWorkflow.logFilePath)
        workflow3VO.recordTimeStamp = self.getDateValue(xsDataWorkflow.recordTimeStamp, "%a %b %d %H:%M:%S %Y", DateTime(datetime.datetime.now()))
        workflow3VO.resultFilePath = self.getXSValue(xsDataWorkflow.resultFilePath)
        workflow3VO.status = self.getXSValue(xsDataWorkflow.status)
        workflow3VO.workflowId = self.getXSValue(xsDataWorkflow.workflowId)
        workflow3VO.workflowTitle = self.getXSValue(xsDataWorkflow.workflowTitle)
        workflow3VO.workflowType = self.getXSValue(xsDataWorkflow.workflowType)
#        print workflow3VO
        self.iWorkflowId = clientToolsForCollectionWebService.service.storeOrUpdateWorkflow(workflow3VO)
        self.DEBUG("EDPluginISPyBStoreWorkflowv1_4.process: WorkflowId=%d" % self.iWorkflowId)

# 需要导入模块: from EDPluginISPyBv1_4 import EDPluginISPyBv1_4 [as 别名]
# 或者: from EDPluginISPyBv1_4.EDPluginISPyBv1_4 import process [as 别名]
    def process(self, _edObject=None):
        """
        Uses ToolsForCollectionWebService for storing the workflow status
        """
        EDPluginISPyBv1_4.process(self)
        self.DEBUG("EDPluginISPyBStoreGridInfov1_4.process")
        # First get the image ID
        xsDataInputGridInfo = self.getDataInput()

        httpAuthenticatedToolsForCollectionWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
        clientToolsForCollectionWebService = Client(self.strToolsForCollectionWebServiceWsdl,
                                                    transport=httpAuthenticatedToolsForCollectionWebService,
                                                    cache=None)
        gridInfoWS3VO = clientToolsForCollectionWebService.factory.create('gridInfoWS3VO')
        gridInfoWS3VO.gridInfoId = self.getXSValue(xsDataInputGridInfo.gridInfoId)
        gridInfoWS3VO.workflowMeshId = self.getXSValue(xsDataInputGridInfo.workflowMeshId)
        gridInfoWS3VO.dx_mm = self.getXSValue(xsDataInputGridInfo.dx_mm)
        gridInfoWS3VO.dy_mm = self.getXSValue(xsDataInputGridInfo.dy_mm)
        gridInfoWS3VO.xOffset = self.getXSValue(xsDataInputGridInfo.xOffset)
        gridInfoWS3VO.yOffset = self.getXSValue(xsDataInputGridInfo.yOffset)
        gridInfoWS3VO.steps_x = self.getXSValue(xsDataInputGridInfo.steps_x)
        gridInfoWS3VO.steps_y = self.getXSValue(xsDataInputGridInfo.steps_y)
        gridInfoWS3VO.meshAngle = self.getXSValue(xsDataInputGridInfo.meshAngle)
#        print gridInfoWS3VO
        self.iGridInfoId = clientToolsForCollectionWebService.service.storeOrUpdateGridInfo(gridInfoWS3VO)
        self.DEBUG("EDPluginISPyBStoreGridInfov1_4.process: WorkflowId=%d" % self.iGridInfoId)

# 需要导入模块: from EDPluginISPyBv1_4 import EDPluginISPyBv1_4 [as 别名]
# 或者: from EDPluginISPyBv1_4.EDPluginISPyBv1_4 import process [as 别名]
    def process(self, _edObject=None):
        """
        First uses the ImageService to find the imageId.
        Then uses ToolsForCollectionWebService for storing the image quality indicators.
        """
        EDPluginISPyBv1_4.process(self)
        self.DEBUG("EDPluginISPyBStoreImageQualityIndicatorsv1_4.process")
        # First get the image ID
        xsDataImageQualityIndicators = self.getDataInput().getImageQualityIndicators()
        strPathToImage = xsDataImageQualityIndicators.getImage().getPath().getValue()
        strDirName = os.path.dirname(strPathToImage)
        strFileName = os.path.basename(strPathToImage)
        httpAuthenticatedToolsForAutoprocessingWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
        clientToolsForAutoprocessingWebService = Client(self.strToolsForAutoprocessingWebServiceWsdl,
                                                        transport=httpAuthenticatedToolsForAutoprocessingWebService,
                                                        cache=None)
        iImageId = 0
        iAutoProcProgramId = self.iAutoProcProgramId
        iSpotTotal = self.getXSValue(xsDataImageQualityIndicators.spotTotal)
        iInResTotal = self.getXSValue(xsDataImageQualityIndicators.inResTotal)
        iGoodBraggCandidates = self.getXSValue(xsDataImageQualityIndicators.goodBraggCandidates)
        iIceRings = self.getXSValue(xsDataImageQualityIndicators.iceRings)
        fMethod1res = self.getXSValue(xsDataImageQualityIndicators.method1Res)
        fMethod2res = self.getXSValue(xsDataImageQualityIndicators.method2Res)
        fMaxUnitCell = self.getXSValue(xsDataImageQualityIndicators.maxUnitCell)
        fPctSaturationTop50peaks = self.getXSValue(xsDataImageQualityIndicators.pctSaturationTop50Peaks)
        iInResolutionOvrlSpots = self.getXSValue(xsDataImageQualityIndicators.inResolutionOvrlSpots)
        fBinPopCutOffMethod2res = self.getXSValue(xsDataImageQualityIndicators.binPopCutOffMethod2Res)
        fTotalIntegratedSignal = self.getXSValue(xsDataImageQualityIndicators.totalIntegratedSignal)
        fDozor_score = self.getXSValue(xsDataImageQualityIndicators.dozor_score)

        providedDate = DateTime(datetime.datetime.now())
        self.iImageQualityIndicatorsId = clientToolsForAutoprocessingWebService.service.storeOrUpdateImageQualityIndicatorsForFileName(
                fileLocation=strDirName, \
                fileName=strFileName, \
                imageId=iImageId, \
                autoProcProgramId=iAutoProcProgramId, \
                spotTotal=iSpotTotal, \
                inResTotal=iInResTotal, \
                goodBraggCandidates=iGoodBraggCandidates, \
                iceRings=iIceRings, \
                method1Res=fMethod1res, \
                method2Res=fMethod2res, \
                maxUnitCell=fMaxUnitCell, \
                pctSaturationTop50Peaks=fPctSaturationTop50peaks, \
                inResolutionOvrlSpots=iInResolutionOvrlSpots, \
                binPopCutOffMethod2Res=fBinPopCutOffMethod2res, \
                totalIntegratedSignal=fTotalIntegratedSignal, \
                dozor_score=fDozor_score)
        self.DEBUG("EDPluginISPyBStoreImageQualityIndicatorsv1_4.process: imageQualityIndicatorsId=%r" % self.iImageQualityIndicatorsId)

# 需要导入模块: from EDPluginISPyBv1_4 import EDPluginISPyBv1_4 [as 别名]
# 或者: from EDPluginISPyBv1_4.EDPluginISPyBv1_4 import process [as 别名]
 def process(self, _edObject=None):
     """
     Uses ToolsForCollectionWebService 
     """
     EDPluginISPyBv1_4.process(self)
     self.DEBUG("EDPluginISPyBStoreMotorPositionv1_4.process")
     httpAuthenticatedToolsForCollectionWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
     clientToolsForCollectionWebService = Client(self.strToolsForCollectionWebServiceWsdl,
                                                 transport=httpAuthenticatedToolsForCollectionWebService,
                                                 cache=None)
     # Loop over all positions
     motorPosition = self.createMotorPosition3VO(clientToolsForCollectionWebService, self.dataInput.motorPosition)
     self.motorPositionId = clientToolsForCollectionWebService.service.storeOrUpdateMotorPosition(
                                 motorPosition=motorPosition)
     self.DEBUG("EDPluginISPyBStoreMotorPositionv1_4.process: motorPositionId=%r" % self.motorPositionId)

# 需要导入模块: from EDPluginISPyBv1_4 import EDPluginISPyBv1_4 [as 别名]
# 或者: from EDPluginISPyBv1_4.EDPluginISPyBv1_4 import process [as 别名]
 def process(self, _edObject=None):
     """
     Stores the contents of the AutoProcContainer in ISPyB.
     """
     EDPluginISPyBv1_4.process(self)
     self.DEBUG("EDPluginISPyBStoreAutoProcProgramAttachmentv1_4.process")
     xsDataInputStoreAutoProcProgramAttachment = self.getDataInput()
     httpAuthenticatedToolsForAutoprocessingWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
     clientToolsForAutoprocessingWebService = Client(self.strToolsForAutoprocessingWebServiceWsdl,
                                                     transport=httpAuthenticatedToolsForAutoprocessingWebService,
                                                     cache=None)
     # AutoProcProgramAttachment
     listAutoProcProgramAttachment = xsDataInputStoreAutoProcProgramAttachment.getAutoProcProgramAttachment()
     for xsDataAutoProcProgramAttachment in listAutoProcProgramAttachment:
         iAutoProcProgramAttachmentId = self.storeOrUpdateAutoProcProgramAttachment(clientToolsForAutoprocessingWebService, xsDataAutoProcProgramAttachment)
         self.dataOutput.addAutoProcProgramAttachmentId(XSDataInteger(iAutoProcProgramAttachmentId))

# 需要导入模块: from EDPluginISPyBv1_4 import EDPluginISPyBv1_4 [as 别名]
# 或者: from EDPluginISPyBv1_4.EDPluginISPyBv1_4 import process [as 别名]
 def process(self, _edObject=None):
     """
     Uses ToolsForCollectionWebService 
     """
     EDPluginISPyBv1_4.process(self)
     self.DEBUG("EDPluginISPyBGetPdbFilePathv1_4.process")
     httpAuthenticatedToolsForCollectionWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
     clientToolsForCollectionWebService = Client(self.strToolsForCollectionWebServiceWsdl,
                                                 transport=httpAuthenticatedToolsForCollectionWebService,
                                                 cache=None)
     # Loop over all positions
     xsDataInputISPyBGetPdbFilePath = self.getDataInput()
     iDataCollectionId = self.getXSValue(xsDataInputISPyBGetPdbFilePath.dataCollectionId)
     self.strPathToPdbFile = clientToolsForCollectionWebService.service.getPdbFilePath(
                                 iDataCollectionId, \
                                 )
     self.DEBUG("EDPluginISPyBGetPdbFilePathv1_4.process: path to pdb file=%r" % self.strPathToPdbFile)

# 需要导入模块: from EDPluginISPyBv1_4 import EDPluginISPyBv1_4 [as 别名]
# 或者: from EDPluginISPyBv1_4.EDPluginISPyBv1_4 import process [as 别名]
    def process(self, _edObject=None):
        """
        Stores the contents of the DataCollectionContainer in ISPyB.
        """
        EDPluginISPyBv1_4.process(self)
        self.DEBUG("EDPluginISPyBStoreDataCollectionv1_4.process")
        xsDataInputStoreDataCollection = self.getDataInput()
        httpAuthenticatedToolsForCollectionWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
        clientToolsForCollectionWebService = Client(self.strToolsForCollectionWebServiceWsdl,
                                                    transport=httpAuthenticatedToolsForCollectionWebService,
                                                    cache=None)

        # DataCollectionProgram
        self.iDataCollectionId = self.storeDataCollectionProgram(clientToolsForCollectionWebService, xsDataInputStoreDataCollection)
        if self.iDataCollectionId is None:
            self.ERROR("Couldn't create entry for DataCollectionId in ISPyB!")
            self.setFailure()
            self.bContinue = False

# 需要导入模块: from EDPluginISPyBv1_4 import EDPluginISPyBv1_4 [as 别名]
# 或者: from EDPluginISPyBv1_4.EDPluginISPyBv1_4 import process [as 别名]
    def process(self, _edObject=None):
        """
        Uses ToolsForCollectionWebService for storing the workflow status
        """
        EDPluginISPyBv1_4.process(self)
        self.DEBUG("EDPluginISPyBUpdateDataCollectionGroupWorkflowIdv1_4.process")
        xsDataInput = self.getDataInput()
#        print xsDataInput.marshal()
        httpAuthenticatedToolsForCollectionWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
        clientToolsForCollectionWebService = Client(self.strToolsForCollectionWebServiceWsdl,
                                                    transport=httpAuthenticatedToolsForCollectionWebService,
                                                    cache=None)
        self.iDataCollectionGroupId = clientToolsForCollectionWebService.service.updateDataCollectionGroupWorkflowId(\
                fileLocation=self.getXSValue(xsDataInput.fileLocation), \
                fileName=self.getXSValue(xsDataInput.fileName), \
                workflowId=self.getXSValue(xsDataInput.workflowId), \
                )
        self.DEBUG("EDPluginISPyBUpdateDataCollectionGroupWorkflowIdv1_4.process: DataCollectionGroupId=%r" % self.iDataCollectionGroupId)

# 需要导入模块: from EDPluginISPyBv1_4 import EDPluginISPyBv1_4 [as 别名]
# 或者: from EDPluginISPyBv1_4.EDPluginISPyBv1_4 import process [as 别名]
 def process(self, _edObject=None):
     """
     Uses ToolsForCollectionWebService 
     """
     EDPluginISPyBv1_4.process(self)
     self.DEBUG("EDPluginISPyBSetBestWilsonPlotPathv1_4.process")
     httpAuthenticatedToolsForCollectionWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
     clientToolsForCollectionWebService = Client(self.strToolsForCollectionWebServiceWsdl,
                                                 transport=httpAuthenticatedToolsForCollectionWebService,
                                                 cache=None)
     # Loop over all positions
     xsDataInputISPyBSetBestWilsonPlotPath = self.getDataInput()
     iDataCollectionId = self.getXSValue(xsDataInputISPyBSetBestWilsonPlotPath.dataCollectionId)
     strBestWilsonPlotPath = self.getXSValue(xsDataInputISPyBSetBestWilsonPlotPath.bestWilsonPlotPath)
     self.dataCollectionId = clientToolsForCollectionWebService.service.setBestWilsonPlotPath(
                                 arg0=iDataCollectionId, \
                                 bestWilsonPlotPath=strBestWilsonPlotPath, \
                                 )
     self.DEBUG("EDPluginISPyBSetBestWilsonPlotPathv1_4.process: dataCollectionId=%r" % self.dataCollectionId)

# 需要导入模块: from EDPluginISPyBv1_4 import EDPluginISPyBv1_4 [as 别名]
# 或者: from EDPluginISPyBv1_4.EDPluginISPyBv1_4 import process [as 别名]
    def process(self, _edObject=None):
        """
        Uses ToolsForCollectionWebService for storing the workflow status
        """
        EDPluginISPyBv1_4.process(self)
        self.DEBUG("EDPluginISPyBUpdateDataCollectionGroupWorkflowIdv1_4.process")
        xsDataInput = self.getDataInput()
        newComment = xsDataInput.newComment.value
#        print xsDataInput.marshal()
        httpAuthenticatedToolsForCollectionWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
        clientToolsForCollectionWebService = Client(self.strToolsForCollectionWebServiceWsdl,
                                                    transport=httpAuthenticatedToolsForCollectionWebService,
                                                    cache=None)
        if xsDataInput.dataCollectionId is None:
            self.ERROR("No input data collection id")
            self.setFailure()
            return
        dataCollectionId = xsDataInput.dataCollectionId.value
        dataCollectionWS3VO = clientToolsForCollectionWebService.service.findDataCollection(dataCollectionId)
        if dataCollectionWS3VO is None:
            self.ERROR("No data collection corresponding to data collection id {0}".format(dataCollectionId))
            self.setFailure()
            return
        dataCollectionGroupId = dataCollectionWS3VO.dataCollectionGroupId
        if dataCollectionGroupId is None:
            self.ERROR("No data collection group corresponding to data collection id {0}".format(dataCollectionId))
            self.setFailure()
            return
        dataCollectionGroupWS3VO = clientToolsForCollectionWebService.service.findDataCollectionGroup(dataCollectionGroupId)
        if not newComment in str(dataCollectionGroupWS3VO.comments):
            dataCollectionGroupWS3VO.comments = newComment
            self.iDataCollectionGroupId = clientToolsForCollectionWebService.service.storeOrUpdateDataCollectionGroup(dataCollectionGroupWS3VO)
            # Make sure the comments hasn't already been added by ISPyB:
            dataCollectionWS3VO = clientToolsForCollectionWebService.service.findDataCollection(dataCollectionId)
            if hasattr(dataCollectionWS3VO, "comments"):
                if not newComment in dataCollectionWS3VO.comments:
                    dataCollectionWS3VO.comments += " " + newComment
                    dataCollectionId = clientToolsForCollectionWebService.service.storeOrUpdateDataCollection(dataCollectionWS3VO)
            else:
                dataCollectionWS3VO.comments = newComment
                dataCollectionId = clientToolsForCollectionWebService.service.storeOrUpdateDataCollection(dataCollectionWS3VO)
        self.DEBUG("EDPluginISPyBUpdateDataCollectionGroupWorkflowIdv1_4.process: DataCollectionGroupId=%r" % self.iDataCollectionGroupId)

# 需要导入模块: from EDPluginISPyBv1_4 import EDPluginISPyBv1_4 [as 别名]
# 或者: from EDPluginISPyBv1_4.EDPluginISPyBv1_4 import process [as 别名]
 def process(self, _edObject=None):
     """
     Retrieves the contents of the DataCollectionContainer in ISPyB
     """
     EDPluginISPyBv1_4.process(self)
     self.DEBUG("EDPluginISPyBRetrieveDataCollectionv1_4.process")
     infile = self.getDataInput()
     httpAuthenticatedToolsForCollectionWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
     clientToolsForCollectionWebService = Client(self.strToolsForCollectionWebServiceWsdl,
                                                 transport=httpAuthenticatedToolsForCollectionWebService,
                                                 cache=None)
     self.collectParameters = None
     if infile.image is not None:
         inpath = infile.image.path.value
         indir = os.path.dirname(inpath)
         infilename = os.path.basename(inpath)
         collect_params = clientToolsForCollectionWebService.service.findDataCollectionFromFileLocationAndFileName(
                          indir,
                          infilename)
     elif infile.dataCollectionId is not None:
         dataCollectionId = infile.dataCollectionId.value
         collect_params = clientToolsForCollectionWebService.service.findDataCollection(dataCollectionId)
     else:
         self.ERROR("Neither image nor data collection id given as input!")
     if collect_params is None:
         self.ERROR("Couldn't find collect for image %s in ISPyB!" % inpath)
         self.setFailure()
     else:
         # the result is a suds.sudsobject.Object, we need to convert it
         res = XSDataISPyBDataCollection()
         try:
             for k, v in collect_params:
                 setattr(res, k, v)
         except:
             self.ERROR('something went wrong converting the result to a XSDataResultRetrieveDataCollection')
             self.setFailure()
         else:
             self.collectParameters = XSDataResultRetrieveDataCollection()
             self.collectParameters.dataCollection = res

# 需要导入模块: from EDPluginISPyBv1_4 import EDPluginISPyBv1_4 [as 别名]
# 或者: from EDPluginISPyBv1_4.EDPluginISPyBv1_4 import process [as 别名]
    def process(self, _edObject=None):
        """
        First uses the ImageService to find the imageId.
        Then uses ToolsForCollectionWebService for storing the image quality indicators.
        """
        EDPluginISPyBv1_4.process(self)
        self.DEBUG("EDPluginISPyBStoreListOfImageQualityIndicatorsv1_4.process")
        httpAuthenticatedToolsForAutoprocessingWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
        clientToolsForAutoprocessingWebService = Client(self.strToolsForAutoprocessingWebServiceWsdl,
                                                        transport=httpAuthenticatedToolsForAutoprocessingWebService,
                                                        cache=None)
        # Loop over all input image quality indicators:
        listImageQualityIndicatorsForWS = []
        for xsDataImageQualityIndicators in self.dataInput.imageQualityIndicators:
            # print xsDataImageQualityIndicators.marshal()
            imageQualityIndicatorsWS3VO = clientToolsForAutoprocessingWebService.factory.create('imageQualityIndicatorsWS3VO')
            strPathToImage = xsDataImageQualityIndicators.getImage().getPath().getValue()
            imageQualityIndicatorsWS3VO.fileName = os.path.basename(strPathToImage)
            imageQualityIndicatorsWS3VO.fileLocation = os.path.dirname(strPathToImage)
#            imageQualityIndicatorsWS3VO.imageId                       = 0
            imageQualityIndicatorsWS3VO.autoProcProgramId = self.iAutoProcProgramId
            imageQualityIndicatorsWS3VO.spotTotal = self.getXSValue(xsDataImageQualityIndicators.spotTotal)
            imageQualityIndicatorsWS3VO.inResTotal = self.getXSValue(xsDataImageQualityIndicators.inResTotal)
            imageQualityIndicatorsWS3VO.goodBraggCandidates = self.getXSValue(xsDataImageQualityIndicators.goodBraggCandidates)
            imageQualityIndicatorsWS3VO.iceRings = self.getXSValue(xsDataImageQualityIndicators.iceRings)
            imageQualityIndicatorsWS3VO.method1Res = self.getXSValue(xsDataImageQualityIndicators.method1Res)
            imageQualityIndicatorsWS3VO.method2Res = self.getXSValue(xsDataImageQualityIndicators.method2Res)
            imageQualityIndicatorsWS3VO.maxUnitCell = self.getXSValue(xsDataImageQualityIndicators.maxUnitCell)
            imageQualityIndicatorsWS3VO.pctSaturationTop50Peaks = self.getXSValue(xsDataImageQualityIndicators.pctSaturationTop50Peaks)
            imageQualityIndicatorsWS3VO.inResolutionOvrlSpots = self.getXSValue(xsDataImageQualityIndicators.inResolutionOvrlSpots)
            imageQualityIndicatorsWS3VO.binPopCutOffMethod2Res = self.getXSValue(xsDataImageQualityIndicators.binPopCutOffMethod2Res)
            imageQualityIndicatorsWS3VO.totalIntegratedSignal = self.getXSValue(xsDataImageQualityIndicators.totalIntegratedSignal)
            imageQualityIndicatorsWS3VO.dozor_score = self.getXSValue(xsDataImageQualityIndicators.dozor_score)
            imageQualityIndicatorsWS3VO.recordTimeStamp = DateTime(datetime.datetime.now())
            listImageQualityIndicatorsForWS.append(imageQualityIndicatorsWS3VO)
        self.listImageQualityIndicatorsId = clientToolsForAutoprocessingWebService.service.storeOrUpdateImageQualityIndicatorsForFileNames(
            listImageQualityIndicatorsForWS=listImageQualityIndicatorsForWS)
        self.DEBUG("EDPluginISPyBStoreListOfImageQualityIndicatorsv1_4.process: listImageQualityIndicatorsId=%r" % self.listImageQualityIndicatorsId)