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Python Crystal.Chain类代码示例

本文整理汇总了Python中Bio.Crystal.Chain的典型用法代码示例。如果您正苦于以下问题:Python Chain类的具体用法?Python Chain怎么用?Python Chain使用的例子?那么恭喜您, 这里精选的类代码示例或许可以为您提供帮助。

在下文中一共展示了Chain类的5个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于我们的系统推荐出更棒的Python代码示例。

示例1: testRemove

    def testRemove(self):

        chain = Chain(self.a[:])
        elements = self.a.strip().split()
        num_elements = len(elements)
        num_a = chain.data.count(Hetero('a'))
        chain.remove('a')
        num_a_remaining = chain.data.count(Hetero('a'))
        self.assertEqual(num_a_remaining, num_a - 1)
        self.assertEqual(len(chain), num_elements - 1)

        chain = Chain(self.b[:])
        elements = self.b.strip().split()
        num_elements = len(elements)
        num_b = chain.data.count(Hetero('t'))
        chain.remove('t')
        num_b_remaining = chain.data.count(Hetero('t'))
        self.assertEqual(num_b_remaining, num_b - 1)
        self.assertEqual(len(chain), num_elements - 1)

        chain = Chain(self.c[:])
        elements = self.c.strip().split()
        num_elements = len(elements)
        num_leu = chain.data.count(Hetero('leu'))
        chain.remove('leu')
        num_leu_remaining = chain.data.count(Hetero('leu'))
        self.assertEqual(num_leu_remaining, num_leu - 1)
        self.assertEqual(len(chain), num_elements - 1)
开发者ID:AkiOhtani,项目名称:biopython,代码行数:28,代码来源:test_Crystal.py


示例2: testCount

    def testCount(self):
        chain = Chain(self.a[:])
        num_a = chain.data.count(Hetero('a'))
        self.assertEqual(chain.count('a'), num_a)

        chain = Chain(self.b[:])
        num_a = chain.data.count(Hetero('t'))
        self.assertEqual(chain.count('t'), num_a)

        chain = Chain(self.c[:])
        num_a = chain.data.count(Hetero('leu'))
        self.assertEqual(chain.count('leu'), num_a)

        chain = Chain(self.c[:])
        num_a = chain.data.count(Hetero('cys'))
        self.assertEqual(chain.count('cys'), num_a)
开发者ID:AkiOhtani,项目名称:biopython,代码行数:16,代码来源:test_Crystal.py


示例3: testIndex

    def testIndex(self):
        chain = Chain(self.a[:])
        index_g = chain.data.index(Hetero('g'))
        self.assertEqual(chain.index('g'), index_g)

        chain = Chain(self.b[:])
        index_c = chain.data.index(Hetero('c'))
        self.assertEqual(chain.index('c'), index_c)

        chain = Chain(self.c[:])
        index_met = chain.data.index(Hetero('met'))
        self.assertEqual(chain.index('met'), index_met)
开发者ID:AkiOhtani,项目名称:biopython,代码行数:12,代码来源:test_Crystal.py


示例4: testAppend

    def testAppend(self):
        chain = Chain(self.a[:])
        chain.append('U')
        elements = self.a.strip().split()
        num_elements = len(elements)
        last_element = chain.data[ -1 ]
        self.assertEqual('u', last_element.data)
        self.assertEqual(len(chain), num_elements + 1)

        chain = Chain(self.a[:])
        chain.append(Hetero('A'))
        elements = self.a.strip().split()
        num_elements = len(elements)
        last_element = chain.data[ -1 ]
        self.assertEqual('a', last_element.data)
        self.assertEqual(len(chain), num_elements + 1)

        chain = Chain(self.b[:])
        chain.append('t')
        elements = self.b.strip().split()
        num_elements = len(elements)
        last_element = chain.data[ -1 ]
        self.assertEqual('t', last_element.data)
        self.assertEqual(len(chain), num_elements + 1)

        chain = Chain(self.b[:])
        chain.append(Hetero('C'))
        elements = self.b.strip().split()
        num_elements = len(elements)
        last_element = chain.data[ -1 ]
        self.assertEqual('c', last_element.data)
        self.assertEqual(len(chain), num_elements + 1)

        chain = Chain(self.c[:])
        chain.append('ser')
        elements = self.c.strip().split()
        num_elements = len(elements)
        last_element = chain.data[ -1 ]
        self.assertEqual('ser', last_element.data)
        self.assertEqual(len(chain), num_elements + 1)
开发者ID:AkiOhtani,项目名称:biopython,代码行数:40,代码来源:test_Crystal.py


示例5: testInsert

    def testInsert(self):
        chain = Chain(self.a[:])
        i = 4
        chain.insert(i, 'g')
        elements = self.a.strip().split()
        num_elements = len(elements)
        target_element = chain.data[ i ]
        self.assertEqual('g', target_element.data)
        self.assertEqual(len(chain), num_elements + 1)

        chain = Chain(self.a[:])
        i = 0
        chain.insert(i, 't')
        elements = self.a.strip().split()
        num_elements = len(elements)
        target_element = chain.data[ i ]
        self.assertEqual('t', target_element.data)
        self.assertEqual(len(chain), num_elements + 1)

        chain = Chain(self.b[:])
        i = 9
        chain.insert(i, Hetero('a'))
        elements = self.a.strip().split()
        num_elements = len(elements)
        target_element = chain.data[ i ]
        self.assertEqual('a', target_element.data)
        self.assertEqual(len(chain), num_elements + 1)

        chain = Chain(self.c[:])
        i = 5
        chain.insert(i, 'gln')
        elements = self.c.strip().split()
        num_elements = len(elements)
        target_element = chain.data[ i ]
        self.assertEqual('gln', target_element.data)
        self.assertEqual(len(chain), num_elements + 1)
开发者ID:AkiOhtani,项目名称:biopython,代码行数:36,代码来源:test_Crystal.py



注:本文中的Bio.Crystal.Chain类示例整理自Github/MSDocs等源码及文档管理平台,相关代码片段筛选自各路编程大神贡献的开源项目,源码版权归原作者所有,传播和使用请参考对应项目的License;未经允许,请勿转载。