本文整理汇总了Python中Bio.Align.Applications.MuscleCommandline.cluster1方法的典型用法代码示例。如果您正苦于以下问题：Python MuscleCommandline.cluster1方法的具体用法？Python MuscleCommandline.cluster1怎么用？Python MuscleCommandline.cluster1使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Bio.Align.Applications.MuscleCommandline的用法示例。
在下文中一共展示了MuscleCommandline.cluster1方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: muscleProcess
# 需要导入模块: from Bio.Align.Applications import MuscleCommandline [as 别名]
# 或者: from Bio.Align.Applications.MuscleCommandline import cluster1 [as 别名]
def muscleProcess (threadID, filebase, outbase, treebase):
fasta = filebase % threadID
output = outbase % threadID
treeFile = treebase % threadID
print( "Building NJ tree from %s" % fasta )
run_muscle = MuscleCommandline( cmd=muscle, input=fasta, out=output )
run_muscle.tree1 = treeFile
run_muscle.cluster1 = "neighborjoining"
run_muscle.maxiters = 1
thisVarHidesTheOutput = run_muscle()示例2: run
# 需要导入模块: from Bio.Align.Applications import MuscleCommandline [as 别名]
# 或者: from Bio.Align.Applications.MuscleCommandline import cluster1 [as 别名]
def run(self):
run_muscle = MuscleCommandline( input=self.fasta, out=self.output )
run_muscle.tree1 = self.tree
run_muscle.cluster1 = "neighborjoining"
run_muscle.maxiters = 1
thisVarHidesTheOutput = run_muscle()