本文整理汇总了Python中MatrixUtil.read_matrix方法的典型用法代码示例。如果您正苦于以下问题：Python MatrixUtil.read_matrix方法的具体用法？Python MatrixUtil.read_matrix怎么用？Python MatrixUtil.read_matrix使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类MatrixUtil的用法示例。
在下文中一共展示了MatrixUtil.read_matrix方法的4个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: get_form
# 需要导入模块: import MatrixUtil [as 别名]
# 或者: from MatrixUtil import read_matrix [as 别名]
def get_form():
"""
@return: the body of a form
"""
lines = Util.get_stripped_lines(g_data.splitlines())
D = np.array(MatrixUtil.read_matrix(lines))
form_objects = [
Form.Matrix('matrix', 'distance matrix',
D, MatrixUtil.assert_predistance)]
return form_objects示例2: get_form
# 需要导入模块: import MatrixUtil [as 别名]
# 或者: from MatrixUtil import read_matrix [as 别名]
def get_form():
"""
@return: the body of a form
"""
lines = Util.get_stripped_lines(g_d.splitlines())
D = np.array(MatrixUtil.read_matrix(lines))
labels = list('xyabcmnp')
# define the form objects
form_objects = [
Form.Matrix('matrix', 'distance matrix',
D, MatrixUtil.assert_predistance),
Form.MultiLine('labels', 'ordered labels',
'\n'.join(labels)),
Form.RadioGroup('recourse', 'recourse for degenerate partitions', [
Form.RadioItem('njrecourse', 'neighbor joining', True),
Form.RadioItem('halvingrecourse', 'stem length halving')])]
return form_objects示例3: get_form
# 需要导入模块: import MatrixUtil [as 别名]
# 或者: from MatrixUtil import read_matrix [as 别名]
def get_form():
"""
@return: the body of a form
"""
# define the default distance matrix
# this is from figure two of a paper called why neighbor joining works
D = MatrixUtil.read_matrix(Util.get_stripped_lines(g_data.splitlines()))
states = list('xyabcmnp')
# define some default strings
ordered_label_string = '\n'.join(states)
selected_label_string = '\n'.join(['m', 'n'])
# define the sequence of form objects
form_objects = [
Form.Matrix('matrix', 'distance matrix',
D, MatrixUtil.assert_predistance),
Form.MultiLine('labels', 'ordered taxa',
ordered_label_string),
Form.MultiLine('selection', 'taxa to be grouped',
selected_label_string)]
# return the sequence of form objects
return form_objects示例4: get_form
# 需要导入模块: import MatrixUtil [as 别名]
# 或者: from MatrixUtil import read_matrix [as 别名]
def get_form():
"""
@return: the body of a form
"""
# define the default distance matrix and the ordered labels
lines = Util.get_stripped_lines(g_data.splitlines())
D = np.array(MatrixUtil.read_matrix(lines))
ordered_labels = list('xyabcmnp')
# define the form objects
form_objects = [
Form.Matrix('matrix', 'distance matrix',
D, MatrixUtil.assert_predistance),
Form.MultiLine('labels', 'ordered labels',
'\n'.join(ordered_labels)),
Form.RadioGroup('options', 'distance matrix splitting options', [
Form.RadioItem('option_a',
'nj split with nj update', True),
Form.RadioItem('option_b',
'nj split with laplace update'),
Form.RadioItem('option_c',
'spectral with nj fallback and laplace update'),
Form.RadioItem('option_d',
'spectral with partial fallback and laplace update')])]
return form_objects