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PHP Tree::getRoot方法代码示例

本文整理汇总了PHP中Tree::getRoot方法的典型用法代码示例。如果您正苦于以下问题:PHP Tree::getRoot方法的具体用法?PHP Tree::getRoot怎么用?PHP Tree::getRoot使用的例子?那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在Tree的用法示例。


在下文中一共展示了Tree::getRoot方法的4个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的PHP代码示例。

示例1: tree2kml

function tree2kml($obj, $default_labels = 'taxa')
{
    $t = new Tree();
    $t->Parse($obj->tree->newick);
    $t->BuildWeights($t->GetRoot());
    // compute KML coordinates
    $attr = array();
    $td = new KmlTreeDrawer($t, $attr);
    $td->CalcCoordinates();
    // raw labels (OTUs)
    //	$port->StartGroup('otu', (('otu' == $default_labels) || !isset($obj->translations)) );
    $kml = '';
    $kml .= "<?xml version =\"1.0\" encoding=\"UTF-8\"?>\n";
    $kml .= "<kml xmlns=\"http://earth.google.com/kml/2.1\">\n";
    $kml .= "<Document>\n";
    $kml .= "<Style id=\"treeLine\">\n";
    $kml .= "<LineStyle><color>7fffffff</color><width>2</width></LineStyle>\n";
    $kml .= "</Style>\n";
    $kml .= "<Style id=\"whiteBall\">\n";
    $kml .= "<IconStyle>\n";
    $kml .= "<Icon>\n";
    $kml .= "<href>http://iphylo.org/~rpage/phyloinformatics/images/whiteBall.png</href>\n";
    $kml .= "</Icon>\n";
    $kml .= "</IconStyle>\n";
    $kml .= "<LineStyle>\n";
    $kml .= "<width>2</width>\n";
    $kml .= "</LineStyle>\n";
    $kml .= "</Style>\n";
    $td->Draw(null);
    $kml .= $td->kml;
    $kml .= "<Folder>\n";
    $kml .= "<name>Labels</name>\n";
    // labels
    $ni = new NodeIterator($t->getRoot());
    $q = $ni->Begin();
    while ($q != NULL) {
        if ($q->IsLeaf()) {
            $kml .= "<Placemark>\n";
            $kml .= "<name>" . $q->Getlabel() . "</name>\n";
            $kml .= "<styleUrl>#whiteBall</styleUrl>\n";
            $kml .= "<Point>\n";
            $kml .= "<altitudeMode>absolute</altitudeMode>\n";
            $kml .= "<extrude>1</extrude>\n";
            $kml .= "<coordinates>\n";
            $kml .= $q->GetAttribute('long') . "," . $q->GetAttribute('lat') . "," . $q->GetAttribute('altitude') . "\n";
            $kml .= "</coordinates>\n";
            $kml .= "</Point>\n";
            $kml .= "</Placemark>\n";
        }
        $q = $ni->Next();
    }
    $kml .= "</Folder>\n";
    $kml .= "</Document>\n";
    $kml .= "</kml>\n";
    echo $kml;
}
开发者ID:rdmpage,项目名称:phyloinformatics,代码行数:56,代码来源:tkml.php

示例2: main

function main()
{
    global $matching_path;
    $have_tree = false;
    $have_taxa = false;
    $have_table = false;
    $newick = '';
    if (isset($_POST['tree'])) {
        $obj = parse_nexus(stripcslashes($_POST['tree']));
        $taxa = get_taxa_from_tree($obj);
        $newick = $obj->tree->newick;
        //echo $newick;
        //print_r($obj);
        $t = new Tree();
        $t->Parse($newick);
        $ni = new NodeIterator($t->getRoot());
        $q = $ni->Begin();
        while ($q != NULL) {
            if ($q->IsLeaf()) {
                if (isset($obj->translations->translate)) {
                    $q->SetLabel($obj->translations->translate[$q->GetLabel()]);
                }
            }
            $q = $ni->Next();
        }
        $newick = $t->WriteNewick();
        //echo $newick;
        $have_tree = true;
    }
    if (isset($_POST['taxa'])) {
        $have_taxa = true;
    }
    if (isset($_POST['table'])) {
        $table = $_POST['table'];
        $have_table = true;
    }
    if (isset($_POST['newick'])) {
        $newick = $_POST['newick'];
    }
    if ($have_tree || $have_taxa) {
        if ($have_table) {
            // get taxa
            $taxa = explode("\n", stripcslashes($_POST['taxa']));
            $n = count($taxa);
            for ($i = 0; $i < $n; $i++) {
                $taxa[$i] = trim($taxa[$i]);
            }
            // get table data
            $table = stripcslashes($_POST['table']);
            // Interpret table automatically...
            // assume column one contains OTUs, and some other column(s) have lat and long
            $data = extract_table($table);
            //print_r($data);
            if (count($taxa) != count($data)) {
                echo '<html>
	<head>
	<meta charset="utf-8" />
			<style type="text/css" title="text/css">
			body { font-family:sans-serif;padding:20px; }
			</style>
	<title>Create KML tree - Error</title>
	</head>
	<body>
	<a href=".">Back</a>
	<h1>Error</h1>
	<p>The number of taxa in the tree (' . count($taxa) . ') does not match the number in the table (' . count($data) . ')</p>
	</body>
	</html>';
                exit;
            }
            $data_lookup_by_label = array();
            foreach ($data as $d) {
                $data_lookup_by_label[$d->label] = $d;
            }
            // show matching...
            /*
            echo '			<form method="post" action=".">
            	<table border="1">';
            	
            	echo '<tr><th>Taxa in tree</th><th>Taxa in table</th><th>Latitude</th><th>Longitude</th></tr>';
            	
            	$nrows = count($data);
            	for ($i=0;$i < $nrows; $i++)
            	{
            		echo '<tr>';
            		
            		echo '<td>' . $taxa[$i] . '</td>';
            		echo '<td>' . $data[$i]->label . '</td>';
            		echo '<td>' . $data[$i]->latlong['latitude'] . '</td>';
            		echo '<td>' . $data[$i]->latlong['longitude'] . '</td>';
            		echo '</td></tr>';
            	}					
            
            					
            	
            echo '</table>
            
            	
            	<input type="submit" value="Go"></input>
            </form>';
//.........这里部分代码省略.........
开发者ID:rdmpage,项目名称:phyloinformatics,代码行数:101,代码来源:index.php

示例3: tree2svg

/**
 * @begin Draw tree and labels in SVG
 *
 * @param width Width (pixels) to draw tree + labels in
 * @param height
 * @param label_space Width (pixels) of space to draw leaf labels in
 * @param font_height Height of font to use to draw labels
 * @param default_labels Name of group of labels to show by default
 *
 */
function tree2svg($obj, $width = 400, $height = 400, $label_space = 150, $font_height = 10, $force_height = false, $default_labels = 'taxa')
{
    //----------------------------------------------------------------------------------------------
    $t = new Tree();
    $t->Parse($obj->tree->newick);
    $t->BuildWeights($t->GetRoot());
    $tree_width = $width - $label_space;
    if (!$force_height) {
        // adjust height to accomodate tree
        $height = $t->GetNumLeaves() * ($font_height + $font_height / 3);
        $inset = $font_height;
    } else {
        $inset = 0;
    }
    // Drawing properties
    $attr = array();
    $attr['inset'] = $inset;
    $attr['width'] = $tree_width;
    $attr['height'] = $height;
    $attr['font_height'] = $font_height;
    $attr['line_width'] = 1;
    // Don't draw labels (we do this afterwards)
    $attr['draw_leaf_labels'] = false;
    $attr['draw_internal_labels'] = false;
    $td = NULL;
    if ($t->HasBranchLengths()) {
        $td = new PhylogramTreeDrawer($t, $attr);
    } else {
        $td = new RectangleTreeDrawer($t, $attr);
    }
    $td->CalcCoordinates();
    if (!$force_height) {
        $port = new SVGPort('', $width, $td->max_height + $attr['font_height']);
    } else {
        $port = new SVGPort('', $width, $height + 2);
    }
    $port->StartGroup('tree');
    $td->Draw($port);
    $port->EndGroup();
    // labels
    if ($label_space > 0) {
        $ni = new NodeIterator($t->getRoot());
        // raw labels (OTUs)
        $port->StartGroup('otu', 'otu' == $default_labels || !isset($obj->translations));
        $q = $ni->Begin();
        while ($q != NULL) {
            if ($q->IsLeaf()) {
                $p0 = $q->GetAttribute('xy');
                $p0['x'] += $font_height / 3;
                $text = $q->Getlabel();
                $text = str_replace("_", " ", $text);
                $action = 'onclick="node_info(\'' . htmlentities($text) . '\');"';
                $port->DrawText($p0, $text, $action);
            }
            $q = $ni->Next();
        }
        $port->EndGroup();
        if ($obj->translations) {
            // Tree has a one or more translation tables
            foreach ($obj->translations as $k => $v) {
                // Draw labels as a separate group
                $port->StartGroup($k, $k == $default_labels ? true : false);
                $q = $ni->Begin();
                while ($q != NULL) {
                    if ($q->IsLeaf()) {
                        $p0 = $q->GetAttribute('xy');
                        $p0['x'] += $font_height / 3;
                        $label = $q->Getlabel();
                        if (is_array($v)) {
                            if (isset($v[$label])) {
                                $label = $v[$label];
                            } else {
                                // No translation for this OTU
                                $label = '[' . $label . ']';
                            }
                        } else {
                            if (isset($v->{$label})) {
                                $label = $v->{$label};
                            } else {
                                // No translation for this OTU
                                $label = '[' . $label . ']';
                            }
                        }
                        $action = 'onclick="node_info(\'' . $q->Getlabel() . '\');"';
                        $port->DrawText($p0, $label, $action);
                    }
                    $q = $ni->Next();
                }
                $port->EndGroup();
            }
//.........这里部分代码省略.........
开发者ID:rdmpage,项目名称:phyloinformatics,代码行数:101,代码来源:tree2svg.php

示例4: get_panneaux_count_6

function get_panneaux_count_6($data,$keys)
{
    $this->load->library('tree'); 
    $result = array();
    $tempRoot = '';
    for($i = 0; $i < count($data[$keys[0]]); $i++)
    {
        if ($data[$keys[0]][$i] != $rootTemp)
        {
            $tree = new Tree();
            $tree->addRoot($keys[0],$this->skip_caracters3($data[$keys[0]][$i]));
            $tempRoot = $data[$keys[0]][$i];
        }
        for($j = 0; $j < count($data[$keys[1]]); $j++)
        {
            for($k = 0; $k < count($data[$keys[2]]); $k++)
            {
                for($l = 0; $l < count($data[$keys[3]]); $l++)
                {
                    for($m = 0; $m < count($data[$keys[4]]); $m++)
                    {
                        for($n = 0; $n < count($data[$keys[5]]); $n++)
                        {
                            $where = "`" . $keys[0] . "` = '" . $this->skip_caracters3($data[$keys[0]][$i]) . "' AND `" . $keys[1] . "` = '" . $this->skip_caracters2($data[$keys[1]][$j]) . "' AND `" . $keys[2] . "` = '" .  $this->skip_caracters2($data[$keys[2]][$k]) . "' AND `" . $keys[3] . "` = '" . $this->skip_caracters2($data[$keys[3]][$l]) .  "' AND `" . $keys[4] . "` = '" . $this->skip_caracters2($data[$keys[4]][$m]) . "' AND `" . $keys[5] . "` = '" . $this->skip_caracters2($data[$keys[5]][$n]) . "'";
                            $nbre = $this->data_model->get_nbre_panneaux($where);
                            $res = $this->data_model->get_grp_panneaux($where);       
                            $grp = $res[0]->grp;
                            $res = $this->data_model->get_tarif_panneaux($where);
                            $tarif = $res[0]->tarif;
                            $cout_grp = $tarif / $grp;
                            $cout_grp_moyen = $grp / $nbre;
                            $nbre_face = $this->data_model->get_nbre_face_panneaux($where);
                            $nbre_fixe = $this->data_model->get_nbre_fixe_panneaux($where);
                            $audience = $nbre_fixe / $nbre_face;
                            $visiblite = $nbre /$nbre_face;
                            if ($nbre > 0) 
                            {                
                                $pann[] = $this->data_model->get_panneaux($where);                 
                                $index1 = $tree->insertRootChild($keys[1],$this->skip_caracters3($data[$keys[1]][$j]));
                                $index2 = $tree->insertChild($keys[2],$this->skip_caracters3($data[$keys[2]][$k]),$tree->getRoot()->getChildAt($index1));
                                $index3 = $tree->insertChild($keys[3],$this->skip_caracters3($data[$keys[3]][$l]),$tree->getRoot()->getChildAt($index1)->getChildAt($index2));
                                $index4 = $tree->insertChild($keys[4],$this->skip_caracters3($data[$keys[4]][$m]),$tree->getRoot()->getChildAt($index1)->getChildAt($index2)->getChildAt($index3));
                                $index5 = $tree->insertChild($keys[5],$this->skip_caracters3($data[$keys[5]][$n]),$tree->getRoot()->getChildAt($index1)->getChildAt($index2)->getChildAt($index3)->getChildAt($index4));
                                $index6 = $tree->insertChild('nbre',$nbre,$tree->getRoot()->getChildAt($index1)->getChildAt($index2)->getChildAt($index3)->getChildAt($index4)->getChildAt($index5));                        
                                $index7 = $tree->insertChild('grp',$grp,$tree->getRoot()->getChildAt($index1)->getChildAt($index2)->getChildAt($index3)->getChildAt($index4)->getChildAt($index5)->getChildAt($index6));    
                                $index8 = $tree->insertChild('cout_grp',$cout_grp,$tree->getRoot()->getChildAt($index1)->getChildAt($index2)->getChildAt($index3)->getChildAt($index4)->getChildAt($index5)->getChildAt($index6)->getChildAt($index7)); 
                                $index9 = $tree->insertChild('cout_grp_moyen',$cout_grp_moyen,$tree->getRoot()->getChildAt($index1)->getChildAt($index2)->getChildAt($index3)->getChildAt($index4)->getChildAt($index5)->getChildAt($index6)->getChildAt($index7)->getChildAt($index8)); 
                                $index10 = $tree->insertChild('audience',$audience,$tree->getRoot()->getChildAt($index1)->getChildAt($index2)->getChildAt($index3)->getChildAt($index4)->getChildAt($index5)->getChildAt($index6)->getChildAt($index7)->getChildAt($index8)->getChildAt($index9)); 
                                $tree->insertChild('visiblite',$visiblite,$tree->getRoot()->getChildAt($index1)->getChildAt($index2)->getChildAt($index3)->getChildAt($index4)->getChildAt($index5)->getChildAt($index6)->getChildAt($index7)->getChildAt($index8)->getChildAt($index9)->getChildAt($index10)); 
                            }  
                        }
                    }                                        
                }
            }
        }
        $this->data_model->set_panneaux($pann);
        $result[] = $tree;
    }
    return $result;
}
开发者ID:jabouzi,项目名称:3b,代码行数:60,代码来源:main.php


注:本文中的Tree::getRoot方法示例由纯净天空整理自Github/MSDocs等开源代码及文档管理平台,相关代码片段筛选自各路编程大神贡献的开源项目,源码版权归原作者所有,传播和使用请参考对应项目的License;未经允许,请勿转载。