PHP joinPaths函数代码示例

function testTemplateClass()
{
    $t = new Template('index.html');
    $t->replace('FOOTER', '<b>This is the footer</b>');
    $t->replace('LOGIN_FORM', joinPaths(CHRIS_VIEW_FOLDER, 'login_form.html'));
    return $t;
}

 function settingsInit()
 {
     $DUTINGS_DB_NAME = getenv("DUTINGS_DB_NAME");
     $DUTINGS_DB_USERNAME = getenv("DUTINGS_DB_USERNAME");
     $DUTINGS_DB_HOSTNAME = getenv("DUTINGS_DB_HOSTNAME");
     $DUTINGS_DB_PASSWORD = getenv("DUTINGS_DB_PASSWORD");
     $GOOGLE_CLIENT_ID = getenv("GOOGLE_CLIENT_ID");
     $homeDirectory = getenv('HOME');
     $settingsFilePath = "/" . joinPaths($homeDirectory, "settings/dutings.php");
     if (file_exists($settingsFilePath)) {
         require $settingsFilePath;
     }
     if (!$DUTINGS_DB_NAME) {
         throw new SettingsException("Missing database name.");
     }
     if (!$DUTINGS_DB_HOSTNAME) {
         throw new SettingsException("Missing database hostname.");
     }
     if (!$DUTINGS_DB_USERNAME) {
         throw new SettingsException("Missing database username.");
     }
     if (!$DUTINGS_DB_PASSWORD) {
         throw new SettingsException("Missing database password.");
     }
     if (!$GOOGLE_CLIENT_ID) {
         throw new SettingsException("Missing google client id.");
     }
     return ["DUTINGS_DB_HOSTNAME" => $DUTINGS_DB_HOSTNAME, "DUTINGS_DB_NAME" => $DUTINGS_DB_NAME, "DUTINGS_DB_USERNAME" => $DUTINGS_DB_USERNAME, "DUTINGS_DB_PASSWORD" => $DUTINGS_DB_PASSWORD, "GOOGLE_CLIENT_ID" => $GOOGLE_CLIENT_ID];
 }

require_once joinPaths(CHRIS_CONTROLLER_FOLDER, 'pacs.helper.php');
// include chris data models
require_once joinPaths(CHRIS_MODEL_FOLDER, 'data.model.php');
// include chris study models
require_once joinPaths(CHRIS_MODEL_FOLDER, 'study.model.php');
// include chris patient models
require_once joinPaths(CHRIS_MODEL_FOLDER, 'patient.model.php');
// include chris data_patient models
require_once joinPaths(CHRIS_MODEL_FOLDER, 'data_patient.model.php');
// include chris data_study models
require_once joinPaths(CHRIS_MODEL_FOLDER, 'data_study.model.php');
// include chris feed_data models
require_once joinPaths(CHRIS_MODEL_FOLDER, 'feed_data.model.php');
// include chris user_data models
require_once joinPaths(CHRIS_MODEL_FOLDER, 'user_data.model.php');
require_once joinPaths(CHRIS_MODEL_FOLDER, 'feed.model.php');
// define the options
$shortopts = "u:f:m:s:p:a:c:o:d:e:y:";
$options = getopt($shortopts);
$user_id = $options['u'];
$feed_chris_id = $options['f'];
$details = "";
if (isset($options['m'])) {
    $details = $options['m'];
}
$server = $options['s'];
$port = $options['p'];
$aetitle = $options['a'];
$aec = $options['c'];
$output_dir = $options['o'];
$study_uid = "";

             // support for parameters without a flag
             $value['name'] = '--' . $value['name'];
         }
         $command .= ' ' . $value['name'] . ' ' . $value['value'];
     }
 }
 // the subfoldertail can be
 // if an input parameter is a dropzone
 // a) the parent directory of the first dropzone
 // b) information parsed from a 0.info file of the first dropzone
 // if there is no dropzone
 // c) the current timestamp
 $subfoldertail = "";
 if ($parentFolder) {
     // check for a 0.info in the $parentFolder
     $info_file = joinPaths($parentFolder, '0.info');
     if (is_file($info_file)) {
         // case b)
         $patientId = "";
         $patientAge = "";
         $patientSex = "";
         // found one, let's parse it
         $file_handle = fopen($info_file, "r");
         while (!feof($file_handle)) {
             $line = fgets($file_handle);
             // split the line at :
             $arr = explode(":", $line);
             if (trim($arr[0]) == "PatientID") {
                 $patientId = trim($arr[1]);
             } else {
                 if (trim($arr[0]) == "PatientAge") {

 *          S&S     S&S    S&S  S&S~YSY%b   S&S    `S*S
 *          S*b     S*S    S*S  S*S   `S%b  S*S     l*S
 *          S*S.    S*S    S*S  S*S    S%S  S*S    .S*P
 *           SSSbs  S*S    S*S  S*S    S&S  S*S  sSS*S
 *            YSSP  SSS    S*S  S*S    SSS  S*S  YSS'
 *                         SP   SP          SP
 *                         Y    Y           Y
 *
 *                     R  E  L  O  A  D  E  D
 *
 * (c) 2012 Fetal-Neonatal Neuroimaging & Developmental Science Center
 *                   Boston Children's Hospital
 *
 *              http://childrenshospital.org/FNNDSC/
 *                        dev@babyMRI.org
 *
 */
// we define a valid entry point
if (!defined('__CHRIS_ENTRY_POINT__')) {
    define('__CHRIS_ENTRY_POINT__', 666);
}
//define('CHRIS_CONFIG_DEBUG',true);
// include the configuration
require_once 'config.inc.php';
// include the simpletest chris framework
require_once SIMPLETEST_CHRIS;
SimpleTest_Chris::setPreference();
// include all the tests suites
require_once joinPaths(CHRIS_CONTROLLER_FOLDER, 'testing/test.controller.php');
require_once joinPaths(CHRIS_MODEL_FOLDER, 'testing/test.model.php');

                                         // return JSON encoded output
                                         die(json_encode($output));
                                     }
                                 }
                             }
                         }
                     }
                 }
             }
         }
     }
     break;
 case "download":
     if ($what == 'file') {
         // here we don't create JSON but just pass thru the file content
         $name = joinPaths(CHRIS_USERS, $parameters);
         // if the file does not exist, just die
         if (!is_file($name)) {
             die;
         }
         $fp = fopen($name, 'rb');
         header("Content-Length: " . filesize($name));
         header("Content-Type: application/octet-stream");
         header("Content-Disposition: attachment; filename=\"" . basename($name) . "\"");
         fpassthru($fp);
         die;
     }
 case "help":
     $result['result'] = 'Perform actions on ChRIS.. Examples: COUNT: ?action=count&what=feed --- GET: ?action=get&what=feed&id=3 --- All parameters can be GET or POST.';
     break;
 case "maintenance":

 /**
  * Get HTML representation of the given object.
  * @param Feed $object object to be converted to HMTL.
  * @return string HTML representation of the object
  */
 public static function getHTML($object, $shine = '')
 {
     // Format username
     $username = FeedV::_getUsername($object->user_id);
     $username_displayed = ucwords($username);
     $feed_meta_simple = '';
     // Format simple meta feed
     $feedMetaSimpleMapper = new Mapper('Feed');
     $feedMetaSimpleMapper->ljoin('Meta', 'meta.target_id = feed.id')->filter('meta.target_type=(?)', 'feed')->filter('meta.name=(?)', 'sharer_id')->filter('meta.target_id=(?)', $object->id)->filter('meta.type=(?)', 'simple');
     $feedMetaSimpleResults = $feedMetaSimpleMapper->get();
     $shared_feed = false;
     if (count($feedMetaSimpleResults['Meta']) >= 1) {
         $username_displayed = 'Shared by ' . ucwords(FeedV::_getUsername($feedMetaSimpleResults['Meta'][0]->value));
         $shared_feed = true;
     }
     // Format advanced meta feed
     $root_id = 0;
     $root_id = FeedV::findFirstRootID($object->id);
     $feed_meta_advanced = $feed_meta_simple;
     $feed_status = 'feed_success';
     $feed_folder = joinPaths(CHRIS_USERS, $username, $object->plugin, $object->name . '-' . $object->id);
     if ($handle = opendir($feed_folder)) {
         while (false !== ($entry = readdir($handle))) {
             if ($entry != "." && $entry != "..") {
                 $match = glob($feed_folder . '/' . $entry . '/_chrisRun_/ERR*');
                 if (count($match)) {
                     $feed_status = 'feed_failure';
                     break;
                 }
                 if ($feed_status == 'feed_failure') {
                     break;
                 }
             }
         }
     }
     // create the status text
     $status_text = '<span style="background-color: #009DE9;color: #fff;padding: 1px 2px;">Running<i class="icon-refresh rotating_class"></i></span>';
     // ('.$object->status.'%)
     if ($feed_status == 'feed_failure') {
         $status_text = '<span style="background-color: #E90000;color: #fff;padding: 1px 2px;">Errors</span>';
         $feed_status = 'feed_success';
     } else {
         if ($object->status == 100) {
             $status_text = '<span style="background-color: #41E900;color: #fff;padding: 1px 2px;">Success</span>';
         } else {
             if ($object->status == 101) {
                 $status_text = '<span style="background-color: #E95D00;color: #fff;padding: 1px 2px;">Canceled</span>';
             }
         }
     }
     $view_icon = 'icon-eye-open';
     $share_icon = 'icon-share-alt';
     $tag_icon = 'icon-tag';
     $archive_icon = 'icon-remove';
     $archive_text = 'Archive';
     if ($object->archive == '1') {
         $archive_icon = 'icon-plus';
         $archive_text = 'Restore';
     }
     $favorite_icon = 'icon-star-empty';
     $favorite_text = 'Favorite';
     if ($object->favorite == '1') {
         $favorite_icon = 'icon-star';
         $favorite_text = '<b>Favorited</b>';
     }
     $edit_icon = '';
     $cancel = '';
     $view = "display:none";
     if ($object->status >= 100 || $shared_feed) {
         $edit_icon = "<img class='feed_edit_icon show_me focus' src='view/gfx/jigsoar-icons/dark/16_edit_page2.png'>";
         // if the job is not queued or running, don't display the cancel icon
         // also if the feed was shared
         $cancel = "display:none";
         $view = "";
     }
     $t = new Template('feed.html');
     $t->replace('ID', $object->id);
     $t->replace('ROOT_ID', $root_id);
     $feed_gfx64 = 'plugins/' . $object->plugin . '/feed.png';
     $feed_gfx64_checked = 'view/gfx/feed_checked.png';
     if (!is_file(joinPaths(CHRIS_WWWROOT, $feed_gfx64))) {
         $feed_gfx64 = 'http://placehold.it/48x48';
     }
     $t->replace('IMAGE_SRC', $feed_gfx64);
     $t->replace('IMAGE_CHECKED', $feed_gfx64_checked);
     $t->replace('USERNAME', $username_displayed);
     $t->replace('FEED_STATUS', $feed_status);
     $t->replace('FEED_NAME', $object->name);
     $t->replace('FEED_META_CONTENT', $feed_meta_advanced);
     $t->replace('TIME_FORMATED', $object->time);
     $t->replace('PLUGIN', ucwords(str_replace('_', ' ', $object->plugin)));
     $t->replace('STATUS', $object->status);
     $t->replace('STATUS_TEXT', $status_text);
     $t->replace('VIEW_ICON', $view_icon);
     $t->replace('SHARE_ICON', $share_icon);
//.........这里部分代码省略.........

 *                         SP   SP          SP
 *                         Y    Y           Y
 *
 *                     R  E  L  O  A  D  E  D
 *
 * (c) 2012 Fetal-Neonatal Neuroimaging & Developmental Science Center
 *                   Boston Children's Hospital
 *
 *              http://childrenshospital.org/FNNDSC/
 *                        dev@babyMRI.org
 *
 */
// we define a valid entry point
if (!defined('__CHRIS_ENTRY_POINT__')) {
    define('__CHRIS_ENTRY_POINT__', 666);
}
//define('CHRIS_CONFIG_DEBUG',true);
// include the configuration
if (!defined('CHRIS_CONFIG_PARSED')) {
    require_once dirname(dirname(dirname(__FILE__))) . '/config.inc.php';
}
// include the simpletest chris framework
require_once SIMPLETEST_CHRIS;
SimpleTest_Chris::setPreference();
// include the test object class since we derive from that
require_once 'test.object.model.php';
// include the data_patient class
require_once joinPaths(CHRIS_MODEL_FOLDER, 'data_study.model.php');
class TestData_StudyModel extends TestObjectModel
{
}

 /**
  * @return string
  */
 public function getCollectionPath()
 {
     return joinPaths($this->getPath(), 'collection.anki2');
 }

 * FEED_ID is important to be able to kill a job.
 */
define('CLUSTER_RUN', 'nohup /bin/mosbatch -q -b -J{FEED_ID} -m{MEMORY} {COMMAND} < /dev/null & echo $!;');
/**
 * The cluster kill command.
 * We specify the command to terminate a job on the cluster.
 * {FEED_ID} will be replaced in the launcher with the plugin required id, in
 * the feed.controller.php
 */
define('CLUSTER_KILL', 'moskillall -9 -J{FEED_ID}');
// --------------------------------------------------------------------------
//
// TESTING
//
// --------------------------------------------------------------------------
define('SIMPLETEST_CHRIS', joinPaths(CHRIS_WWWROOT, 'testing/simpletest_chris.php'));
define('SIMPLETEST_HTML_CHRIS', joinPaths(CHRIS_WWWROOT, 'testing/html_chris.php'));
define('SIMPLETEST_XML_CHRIS', joinPaths(CHRIS_WWWROOT, 'testing/xml_chris.php'));
define('SIMPLETEST_SIMPLETEST', joinPaths(CHRIS_WWWROOT, 'lib/simpletest/simpletest.php'));
define('SIMPLETEST_AUTORUN', joinPaths(CHRIS_WWWROOT, 'lib/simpletest/autorun.php'));
// GOOGLE ANALYTICS
define('ANALYTICS_ACCOUNT', 'UA-39303022-1');
// if CHRIS_DEBUG is defined, print all constants
if (defined('CHRIS_CONFIG_DEBUG')) {
    $all_constants = get_defined_constants(true);
    print_r($all_constants['user']);
}
// setup phpseclib for SSH access
set_include_path(get_include_path() . PATH_SEPARATOR . joinPaths(CHRIS_LIB_FOLDER, 'phpseclib', 'phpseclib'));
// FLAG showing that the config was parsed
define('CHRIS_CONFIG_PARSED', true);

 *                        dev@babyMRI.org
 *
 */
// we define a valid entry point
if (!defined('__CHRIS_ENTRY_POINT__')) {
    define('__CHRIS_ENTRY_POINT__', 666);
}
// include the configuration
if (!defined('CHRIS_CONFIG_PARSED')) {
    require_once dirname(dirname(dirname(__FILE__))) . '/config.inc.php';
}
// include the simpletest chris framework
require_once SIMPLETEST_CHRIS;
SimpleTest_Chris::setPreference();
// include the controller classes
require_once joinPaths(CHRIS_CONTROLLER_FOLDER, 'pacs.class.php');
class TestPACSClass extends UnitTestCase
{
    /**
     * Test the ping method
     */
    //! [testPing()]
    public function testPing()
    {
        // ping a valid host (CHB)
        $server_ip = '134.174.12.21';
        $server_port = 104;
        $pacs_ping = new PACS($server_ip, $server_port);
        $result = $pacs_ping->ping();
        // should return 1 on success
        $this->assertTrue($result == 1);

function fixRelativePaths($path, $basePath)
{
    // absolute path
    $isColon = strrpos($path, ":") !== false;
    $isDoubleSlash = trim(startsWith($path, "//"));
    $isModxTag = startsWith(trim($path), "[[") && endsWith(trim($path), "]]");
    // relative path
    if (!$isColon && !$isDoubleSlash && !$isModxTag) {
        return joinPaths($basePath, $path);
    } else {
        return $path;
    }
}

# don't show any errors...
error_reporting(E_ALL | E_STRICT);
# ...but do log them
session_start();
include 'config.php';
include 'utils.php';
$response_array = array();
if ($_SESSION["verify"] != "FileManager4TinyMCE") {
    $response_array['status'] = 'failure';
    $response_array['reason'] = 'Forbidden';
    returnJSON($response_array);
}
// Check to make sure we are not traversing the filesystem
if (strpos($_POST['path'], '..') !== false) {
    $response_array['status'] = 'failure';
    $response_array['reason'] = 'Forbidden Path';
    returnJSON($response_array);
}
// Join the path to our root paths
$path = joinPaths($root, $upload_dir, $_POST['path']);
$path_thumbs = joinPaths($root, $thumbs_dir, $_POST['path']);
// DELETE STUFF!!!
if (!(deleteDir($path) && deleteDir($path_thumbs))) {
    $response_array['status'] = 'failure';
    $response_array['reason'] = 'Error deleting ' . $_POST['path'];
    returnJSON($response_array);
} else {
    $response_array['status'] = 'success';
    $response_array['reason'] = 'Deleted ' . $_POST['path'];
    returnJSON($response_array);
}

 *                         SP   SP          SP
 *                         Y    Y           Y
 *
 *                     R  E  L  O  A  D  E  D
 *
 * (c) 2012 Fetal-Neonatal Neuroimaging & Developmental Science Center
 *                   Boston Children's Hospital
 *
 *              http://childrenshospital.org/FNNDSC/
 *                        dev@babyMRI.org
 *
 */
// we define a valid entry point
if (!defined('__CHRIS_ENTRY_POINT__')) {
    define('__CHRIS_ENTRY_POINT__', 666);
}
//define('CHRIS_CONFIG_DEBUG',true);
// include the configuration
if (!defined('CHRIS_CONFIG_PARSED')) {
    require_once dirname(dirname(dirname(__FILE__))) . '/config.inc.php';
}
// include the simpletest chris framework
require_once SIMPLETEST_CHRIS;
SimpleTest_Chris::setPreference();
// include the test object class since we derive from that
require_once 'test.object.model.php';
// include the patient class
require_once joinPaths(CHRIS_MODEL_FOLDER, 'patient.model.php');
class TestPatientModel extends TestObjectModel
{
}

 public static function status($feedid, $status, $op)
 {
     // get $db instance
     $db = DB::getInstance();
     $db->lock('feed', 'WRITE');
     // grab the feed
     $feedResult = Mapper::getStatic('Feed', $feedid);
     if (count($feedResult['Feed']) == 0) {
         $db->unlock();
         die('Invalid feed id.');
     }
     # grab old status
     $old_status = $feedResult['Feed'][0]->status;
     $type = gettype($status);
     echo "Performing '{$op}' with value '{$status}' on current status '{$old_status}'\n";
     if ($op == 'inc') {
         // increasing mode
         echo "Increasing status of feed {$feedid} by {$status}... ";
         # increase status
         $status = $old_status + $status;
     }
     if ($op == 'set') {
         // set mode
         if ($old_status >= $status || $status > 100) {
             $db->unlock();
             die("Ignoring setting the status since the old status {$old_status} >= the new status {$status} or the old status >= 100.\n");
         } else {
             echo "Setting status of feed {$feedid} to {$status}... ";
         }
     }
     echo "status now {$status}.\n";
     # clamp the addition
     if ($status >= 100) {
         $status = 100;
         $startTime = $feedResult['Feed'][0]->time;
         $endTime = microtime(true);
         $duration = $endTime - $startTime;
         $feedResult['Feed'][0]->time = $endTime;
         $feedResult['Feed'][0]->duration = $duration;
     }
     # push to database
     $feedResult['Feed'][0]->status = $status;
     Mapper::update($feedResult['Feed'][0], $feedid);
     $db->unlock();
     # update related shared feeds
     $relatedMapper = new Mapper('Feed');
     $relatedMapper->join('Meta', 'Meta.target_id = Feed.id')->filter('Meta.name = (?)', 'root_id')->filter('Meta.value = (?)', $feedResult['Feed'][0]->id)->filter('Feed.id != (?)', $feedResult['Feed'][0]->id);
     $relatedResult = $relatedMapper->get();
     foreach ($relatedResult['Feed'] as $key => $value) {
         $relatedResult['Feed'][$key]->time = $feedResult['Feed'][0]->time;
         $relatedResult['Feed'][$key]->duration = $feedResult['Feed'][0]->duration;
         $relatedResult['Feed'][$key]->status = $feedResult['Feed'][0]->status;
         Mapper::update($relatedResult['Feed'][$key], $relatedResult['Feed'][$key]->id);
     }
     # send email if status == 100
     if ($status == 100) {
         // user's email
         $userMapper = new Mapper('User');
         $userMapper->filter('user.id = (?)', $feedResult['Feed'][0]->user_id);
         $userResult = $userMapper->get();
         // if nothing in DB yet, return -1
         if (count($userResult['User']) > 0) {
             $subject = "ChRIS2 - " . $feedResult['Feed'][0]->plugin . " plugin finished";
             $message = "Hello " . $userResult['User'][0]->username . "," . PHP_EOL . PHP_EOL;
             $message .= "Your results are available at:" . PHP_EOL . PHP_EOL;
             $dirRoot = joinPaths(CHRIS_USERS, $userResult['User'][0]->username, $feedResult['Feed'][0]->plugin, $feedResult['Feed'][0]->name . '-' . $feedResult['Feed'][0]->id);
             $dataDir = array_diff(scandir($dirRoot), array('..', '.'));
             foreach ($dataDir as $dir) {
                 $mailFilePath = $dirRoot . '/' . $dir . '/_chrisRun_/' . 'chris.mail';
                 if (file_exists($mailFilePath)) {
                     $mailContents = file_get_contents($mailFilePath);
                     $message .= $dirRoot . '/' . $dir . PHP_EOL . $mailContents . PHP_EOL . PHP_EOL;
                 } else {
                     $message .= $dirRoot . '/' . $dir . PHP_EOL . PHP_EOL;
                 }
             }
             $message .= "Thank you for using ChRIS.";
             echo "Sending email to " . $userResult['User'][0]->email . " since the status is '{$status}'%.\n";
             // get user email address
             email(CHRIS_PLUGIN_EMAIL_FROM, $userResult['User'][0]->email, $subject, $message);
         }
     }
 }