Java OWLAnnotationAssertionAxiom.getProperty方法代码示例

import org.semanticweb.owlapi.model.OWLAnnotationAssertionAxiom; //导入方法依赖的package包/类
private Map<String, Object> renderAnnotationAxioms(Set<OWLAnnotationAssertionAxiom> annotations) {
	Map<String, Object> result = null;
	if (annotations != null && !annotations.isEmpty()) {
		for (OWLAnnotationAssertionAxiom ax : annotations) {
			OWLAnnotationProperty prop = ax.getProperty();
			String literal = getLiteralValue(ax.getValue());
			if (literal != null) {
				if (result == null) {
					result = new HashMap<String, Object>();
				}
				result.put(prop.toStringID(), literal);
			}
		}
	}
	return result;
}
 

import org.semanticweb.owlapi.model.OWLAnnotationAssertionAxiom; //导入方法依赖的package包/类
private OWLAxiom tr(OWLClass c, OWLAnnotationAssertionAxiom ax) {
	OWLAnnotationProperty p = ax.getProperty();
	if (!ecmap.containsKey(c)) {
		// preserve as-is, exception for labels
		if (p.isLabel()) {
			OWLLiteral lit = (OWLLiteral) ax.getValue();
			String newVal = lit.getLiteral() + " (" + suffix + ")";
			return fac.getOWLAnnotationAssertionAxiom(ax.getProperty(),
					ax.getSubject(), fac.getOWLLiteral(newVal));
		}
		return ax;

	} else {
		// the class is merged - ditch its axioms
		// (in future some may be preserved - syns?)
		// fac.getOWLAnnotationAssertionAxiom(ax.getProperty(), ecmap,
		// ax.getValue());
		return null;
	}
}
 

import org.semanticweb.owlapi.model.OWLAnnotationAssertionAxiom; //导入方法依赖的package包/类
/**
 * Find all corresponding {@link OWLObject}s with an OBO-style alternate identifier.
 * <p>
 * WARNING: This methods scans all object annotations in all ontologies. 
 * This is an expensive method.
 * 
 * @return map of altId to OWLObject (never null)
 */
public Map<String, OWLObject> getAllOWLObjectsByAltId() {
	final Map<String, OWLObject> results = new HashMap<String, OWLObject>();
	final OWLAnnotationProperty altIdProperty = getAnnotationProperty(OboFormatTag.TAG_ALT_ID.getTag());
	if (altIdProperty == null) {
		return Collections.emptyMap();
	}
	for (OWLOntology o : getAllOntologies()) {
		Set<OWLAnnotationAssertionAxiom> aas = o.getAxioms(AxiomType.ANNOTATION_ASSERTION);
		for (OWLAnnotationAssertionAxiom aa : aas) {
			OWLAnnotationValue v = aa.getValue();
			OWLAnnotationProperty property = aa.getProperty();
			if (altIdProperty.equals(property) && v instanceof OWLLiteral) {
				String altId = ((OWLLiteral)v).getLiteral();
				OWLAnnotationSubject subject = aa.getSubject();
				if (subject instanceof IRI) {
					OWLObject obj = getOWLObject((IRI) subject);
					if (obj != null) {
						results.put(altId, obj);
					}
				}
			}
		}
	}
	return results;
}
 

import org.semanticweb.owlapi.model.OWLAnnotationAssertionAxiom; //导入方法依赖的package包/类
private Metadata extractMetadata(OWLNamedIndividual individual, OWLGraphWrapper modelGraph, String modelId) {
	Metadata metadata = new Metadata();
	metadata.modelId = modelId;
	metadata.individualIds = new HashSet<IRI>();
	metadata.individualIds.add(individual.getIRI());
	Set<OWLAnnotationAssertionAxiom> assertionAxioms = modelGraph.getSourceOntology().getAnnotationAssertionAxioms(individual.getIRI());
	for (OWLAnnotationAssertionAxiom axiom : assertionAxioms) {
		OWLAnnotationProperty currentProperty = axiom.getProperty();
		OWLAnnotationValue value = axiom.getValue();
		extractMetadata(currentProperty, value, metadata);
	}
	return metadata;
}
 

import org.semanticweb.owlapi.model.OWLAnnotationAssertionAxiom; //导入方法依赖的package包/类
/**
 * Check, if the named object has the annotation property IAO:0000412, 
 * declaring the object as imported.
 * 
 * @param named
 * @param ontology
 * @return true if the item has the annotation property IAO:0000412
 */
public static boolean isImportMarkedEntity(OWLNamedObject named, OWLOntology ontology) {
	for (OWLAnnotationAssertionAxiom axiom : ontology.getAnnotationAssertionAxioms(named.getIRI())) {
		OWLAnnotationProperty property = axiom.getProperty();
		if (importedMarkerIRI.equals(property.getIRI())) {
			return true;
		}
	}
	return false;
}
 

import org.semanticweb.owlapi.model.OWLAnnotationAssertionAxiom; //导入方法依赖的package包/类
/**
 * Find the corresponding {@link OWLObject}s for a given set of OBO-style alternate identifiers.
 * <p>
 * WARNING: This methods scans all object annotations in all ontologies. 
 * This is an expensive method.
 * <p>
 * Consider loading all altId-mappings using {@link #getAllOWLObjectsByAltId()}.
 * 
 * @param altIds
 * @return map of altId to OWLObject (never null)
 * @see #getAllOWLObjectsByAltId()
 */
public Map<String, OWLObject> getOWLObjectsByAltId(Set<String> altIds) {
	final Map<String, OWLObject> results = new HashMap<String, OWLObject>();
	final OWLAnnotationProperty altIdProperty = getAnnotationProperty(OboFormatTag.TAG_ALT_ID.getTag());
	if (altIdProperty == null) {
		return Collections.emptyMap();
	}
	for (OWLOntology o : getAllOntologies()) {
		Set<OWLAnnotationAssertionAxiom> aas = o.getAxioms(AxiomType.ANNOTATION_ASSERTION);
		for (OWLAnnotationAssertionAxiom aa : aas) {
			OWLAnnotationValue v = aa.getValue();
			OWLAnnotationProperty property = aa.getProperty();
			if (altIdProperty.equals(property) && v instanceof OWLLiteral) {
				String altId = ((OWLLiteral)v).getLiteral();
				if (altIds.contains(altId)) {
					OWLAnnotationSubject subject = aa.getSubject();
					if (subject instanceof IRI) {
						OWLObject obj = getOWLObject((IRI) subject);
						if (obj != null) {
							results.put(altId, obj);
						}
					}
				}
			}
		}
	}
	return results;
}