本文整理汇总了Java中org.sbml.jsbml.Compartment.setSize方法的典型用法代码示例。如果您正苦于以下问题:Java Compartment.setSize方法的具体用法?Java Compartment.setSize怎么用?Java Compartment.setSize使用的例子?那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类org.sbml.jsbml.Compartment
的用法示例。
在下文中一共展示了Compartment.setSize方法的3个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的Java代码示例。
示例1: createCompartment
import org.sbml.jsbml.Compartment; //导入方法依赖的package包/类
private void createCompartment(String strCompartName, String _Id,
String _Constant, String _SpatialDimension, String _MetaId,
String _SBOTermId, String _Size) {
if (!foundCompartment(strCompartName)) {
Compartment _compartment = model.createCompartment(_Id);
_compartment.setName(strCompartName);
_compartment.setConstant(Boolean.valueOf(_Constant));
_compartment
.setSpatialDimensions(Double.valueOf(_SpatialDimension));
_compartment.setMetaId(_MetaId);
_compartment.setSBOTerm(_SBOTermId);
_compartment.setSize(Double.valueOf(_Size));
_ListOfCompartments.add(strCompartName);
}
}
示例2: createSBMLDocument
import org.sbml.jsbml.Compartment; //导入方法依赖的package包/类
public void createSBMLDocument(String modelId,boolean grid,boolean lema) {
sbml = new SBMLDocument(GlobalConstants.SBML_LEVEL, GlobalConstants.SBML_VERSION);
modelId = modelId.replaceAll("[\\W]|_", "_");
if (Character.isDigit(modelId.charAt(0))) modelId = "m" + modelId;
Model m = sbml.createModel(modelId);
metaIDIndex = SBMLutilities.setDefaultMetaID(sbml, m, metaIDIndex);
sbmlFile = modelId + ".xml";
createCompPlugin();
createLayoutPlugin();
createFBCPlugin();
if (!lema) {
Compartment c = m.createCompartment();
if (grid) {
if (!modelId.equals("Grid")) {
c.setId("Grid");
} else {
c.setId("GridComp");
}
loadDefaultParameters();
} else {
if (!modelId.equals("Cell")) {
c.setId("Cell");
} else {
c.setId("CellComp");
}
Port port = sbmlCompModel.createPort();
port.setId(GlobalConstants.COMPARTMENT+"__"+c.getId());
port.setIdRef(c.getId());
}
c.setSize(1);
c.setSpatialDimensions(3);
c.setConstant(true);
}
}
示例3: createCompartment
import org.sbml.jsbml.Compartment; //导入方法依赖的package包/类
public String createCompartment(String id, float x, float y) {
if (!checkCompartmentOverlap(id,x,y,
GlobalConstants.DEFAULT_COMPARTMENT_WIDTH,GlobalConstants.DEFAULT_COMPARTMENT_HEIGHT)) {
message.setErrorDialog("Compartment Overlap", "Compartments must not overlap.");
this.notifyObservers(message);
return "";
}
Compartment compartment = sbml.getModel().createCompartment();
if (id == null) {
do {
creatingCompartmentID++;
id = "Comp" + String.valueOf(creatingCompartmentID);
}
while ((SBMLutilities.getElementBySId(sbml, id)!=null)||(SBMLutilities.getElementByMetaId(sbml, id)!=null));
}
compartment.setId(id);
// Set default promoter metaID
metaIDIndex = SBMLutilities.setDefaultMetaID(sbml, compartment, metaIDIndex);
compartment.setConstant(true);
compartment.setSize(1);
compartment.setSpatialDimensions(3);
if (!isGridEnabled()) {
Layout layout = getLayout();
CompartmentGlyph compartmentGlyph = null;
if (layout.getCompartmentGlyph(GlobalConstants.GLYPH+"__"+id)!=null) {
compartmentGlyph = layout.getCompartmentGlyph(GlobalConstants.GLYPH+"__"+id);
} else {
compartmentGlyph = layout.createCompartmentGlyph(GlobalConstants.GLYPH+"__"+id);
compartmentGlyph.setCompartment(id);
compartmentGlyph.createBoundingBox();
compartmentGlyph.getBoundingBox().createDimensions();
compartmentGlyph.getBoundingBox().createPosition();
}
compartmentGlyph.getBoundingBox().getPosition().setX(x);
compartmentGlyph.getBoundingBox().getPosition().setY(y);
compartmentGlyph.getBoundingBox().getDimensions().setWidth(GlobalConstants.DEFAULT_COMPARTMENT_WIDTH);
compartmentGlyph.getBoundingBox().getDimensions().setHeight(GlobalConstants.DEFAULT_COMPARTMENT_HEIGHT);
TextGlyph textGlyph = layout.createTextGlyph(GlobalConstants.TEXT_GLYPH+"__"+id);
textGlyph.createBoundingBox();
textGlyph.getBoundingBox().createDimensions();
textGlyph.getBoundingBox().createPosition();
textGlyph.setGraphicalObject(GlobalConstants.GLYPH+"__"+id);
textGlyph.setText(SBMLutilities.getArrayId(sbml,id));
textGlyph.setBoundingBox(compartmentGlyph.getBoundingBox().clone());
}
return id;
}