本文整理汇总了Java中org.pathvisio.core.model.PathwayElement.getDataSource方法的典型用法代码示例。如果您正苦于以下问题：Java PathwayElement.getDataSource方法的具体用法？Java PathwayElement.getDataSource怎么用？Java PathwayElement.getDataSource使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类org.pathvisio.core.model.PathwayElement的用法示例。
在下文中一共展示了PathwayElement.getDataSource方法的4个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Java代码示例。
示例1: getBackpageHTML
import org.pathvisio.core.model.PathwayElement; //导入方法依赖的package包/类
/**
* generates html for a given PathwayElement. Combines the base
* header with fragments from all BackpageHooks into one html String.
*/
public String getBackpageHTML(PathwayElement e)
{
if (e == null) {
return "<p>No pathway element is selected.</p>";
} else if (e.getObjectType() != ObjectType.DATANODE && e.getObjectType() != ObjectType.LINE) {
return "<p>Backpage is not available for this type of element.<BR>Only DataNodes or Interactions can have a backpage.</p>";
} else if (e.getDataSource() == null || e.getXref().getId().equals("")) {
return "<p>There is no annotation for this pathway element defined.</p>";
}
StringBuilder builder = new StringBuilder(backpagePanelHeader);
for (BackpageHook h : hooks)
{
builder.append(h.getHtml(e));
}
builder.append ("</body></html>");
return builder.toString();
}
示例2: usesOldEnsembl
import org.pathvisio.core.model.PathwayElement; //导入方法依赖的package包/类
private boolean usesOldEnsembl(Pathway pwy)
{
Organism org = Organism.fromLatinName(pwy.getMappInfo().getOrganism());
if (!ensSpecies.containsKey(org))
return false; // this pwy is not one of the species to be converted
for (PathwayElement elt : pwy.getDataObjects())
{
if (elt.getObjectType() == ObjectType.DATANODE &&
elt.getDataSource() == BioDataSource.ENSEMBL)
{
return true;
}
}
return false;
}
示例3: convertEnsembl
import org.pathvisio.core.model.PathwayElement; //导入方法依赖的package包/类
/**
* Ensembl considers each species database as separate,
* and thus they should have separate system codes as well.
* This method will convert generic Ensembl datanodes
* to species specific datanodes if possible.
*/
private void convertEnsembl(Pathway pwy)
{
Organism org = Organism.fromLatinName(pwy.getMappInfo().getOrganism());
if (!ensSpecies.containsKey(org))
return; // this pwy is not one of the species to be converted
for (PathwayElement elt : pwy.getDataObjects())
{
if (elt.getObjectType() == ObjectType.DATANODE &&
elt.getDataSource() == BioDataSource.ENSEMBL)
{
elt.setDataSource (ensSpecies.get (org));
}
}
}
示例4: getAnnotationHTML
import org.pathvisio.core.model.PathwayElement; //导入方法依赖的package包/类
/**
* generates html for a given PathwayElement. Combines the base header with
* fragments from all BackpageHooks into one html String.
*/
public String getAnnotationHTML(PathwayElement e) {
if (e == null) {
return "<p>No pathway element is selected.</p>";
} else if (e.getObjectType() != ObjectType.DATANODE
&& e.getObjectType() != ObjectType.LINE) {
return "<p>It is currently not possible to annotate this type of pathway element." +
"<BR>Only DataNodes and Interactions can be annotated.</p>";
} else if (e.getDataSource() == null || e.getXref().getId().equals("")) {
return "<p>This pathway element has not yet been annotated.</p>";
}
StringBuilder builder = new StringBuilder(backpagePanelHeader);
for (DataHook h : hooks) {
builder.append(h.getHtml(e));
}
builder.append("</body></html>");
return builder.toString();
}