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Java CyNetworkView.getNodeView方法代码示例

本文整理汇总了Java中org.cytoscape.view.model.CyNetworkView.getNodeView方法的典型用法代码示例。如果您正苦于以下问题：Java CyNetworkView.getNodeView方法的具体用法？Java CyNetworkView.getNodeView怎么用？Java CyNetworkView.getNodeView使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类org.cytoscape.view.model.CyNetworkView的用法示例。


在下文中一共展示了CyNetworkView.getNodeView方法的9个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Java代码示例。

示例1: forNodes

import org.cytoscape.view.model.CyNetworkView; //导入方法依赖的package包/类
public static CoordinateData forNodes(CyNetworkView networkView, Collection<CyNode> nodes) {
	double xmin = 100000000;
	double xmax = -100000000;
	double ymin = 100000000;
	double ymax = -100000000;
	
	Map<CyNode,double[]> coordinates = new HashMap<>();
	Map<CyNode,Double> radii = new HashMap<>();
	
	for(CyNode node : nodes) {
		View<CyNode> nodeView = networkView.getNodeView(node);
		if(nodeView != null) {
			double x = nodeView.getVisualProperty(BasicVisualLexicon.NODE_X_LOCATION);
			double y = nodeView.getVisualProperty(BasicVisualLexicon.NODE_Y_LOCATION);
			double radius = nodeView.getVisualProperty(BasicVisualLexicon.NODE_WIDTH);
			
			coordinates.put(node, new double[]{x,y});
			radii.put(node, radius);
			
			xmin = Double.min(xmin, x);
			xmax = Double.max(xmax, x);
			ymin = Double.min(ymin, y);
			ymax = Double.max(ymax, y);
		}
	}
	
	return new CoordinateData(xmin, xmax, ymin, ymax, coordinates, radii);
}
开发者ID:BaderLab，项目名称:AutoAnnotateApp，代码行数:29，代码来源:CoordinateData.java

示例2: processCallResponse

import org.cytoscape.view.model.CyNetworkView; //导入方法依赖的package包/类
@Override
public void processCallResponse(ExtensionCall call, Object callRetValue) {

	List<Double> values = (List<Double>)callRetValue;

	CyTable defNodeTab = currNet.getDefaultNodeTable();
	CyNetworkView networkView = getPlugin().getCyNetViewMgr().getNetworkViews(currNet).iterator().next();

	for(int i = 0; i < (values.size() / 3); ++i){
		Long neoid = values.get(i*3).longValue();
		Double x = values.get(i*3+1);
		Double y = values.get(i*3+2);

		Set<CyNode> nodeSet = CyUtils.getNodesWithValue(currNet, defNodeTab, "neoid", neoid);
		CyNode n = nodeSet.iterator().next();

		View<CyNode> nodeView = networkView.getNodeView(n);
		nodeView.setVisualProperty(BasicVisualLexicon.NODE_X_LOCATION, x);
		nodeView.setVisualProperty(BasicVisualLexicon.NODE_Y_LOCATION, y);

		CyUtils.updateVisualStyle(getPlugin().getVisualMappingManager(), networkView, currNet);
	}
}
开发者ID:gsummer，项目名称:cyNeo4j，代码行数:24，代码来源:ForceAtlas2LayoutExtExec.java

示例3: addNodes

import org.cytoscape.view.model.CyNetworkView; //导入方法依赖的package包/类
/**
 * @desc - Adds nodes to the protein network from the information returned by the Slim* run.
 * @param uniprotIDs - list of all Uniprot IDs input to the returned run.
 * @param nodeIds - map linking all selected Uniprot IDs to their CyNodes, for easy access to the network.
 * @param newNetwork - CyNetwork of the network being altered.
 * @param networkViewManager - NetworkViewManager for the network being altered. Initialised in CyActivator.
 * @param manager - CyApplicationManager for the network being altered. Initialised in CyActivator.
 */
public void addNodes (List<String> uniprotIDs, Map<String, CyNode> nodeIds, CyNetwork newNetwork,
                      CyNetworkViewManager networkViewManager, CyApplicationManager manager) {

    // Add network view
    final Collection<CyNetworkView> views = networkViewManager.getNetworkViews(newNetwork);
    CyNetworkView myView = null;
    if(views.size() != 0) {
        myView = views.iterator().next();
    }

    if (myView == null) {
        // create a new view for my network
        myView = networkViewFactory.createNetworkView(newNetwork);
        networkViewManager.addNetworkView(myView);
    } else {
        System.out.println("networkView already existed.");
    }

    CyNetworkView networkView =  manager.getCurrentNetworkView();
    for (Object o : nodeIds.entrySet()) {
        Map.Entry pairs = (Map.Entry) o;
        CyNode node = (CyNode) pairs.getValue();
        View<CyNode> nodeView = networkView.getNodeView(node);
        nodeView.setLockedValue(BasicVisualLexicon.NODE_SHAPE, NodeShapeVisualProperty.ELLIPSE);
        nodeView.setLockedValue(BasicVisualLexicon.NODE_BORDER_PAINT, Color.BLACK);
        nodeView.setLockedValue(BasicVisualLexicon.NODE_SIZE, 60.0);
    }
}
开发者ID:passeridae，项目名称:SLiMscape，代码行数:37，代码来源:AlterGraph.java

示例4: isHidden

import org.cytoscape.view.model.CyNetworkView; //导入方法依赖的package包/类
private static boolean isHidden(CyNode node, CyNetworkView networkView) {
	View<CyNode> nodeView = networkView.getNodeView(node);
	return isHidden(nodeView);
}
开发者ID:BaderLab，项目名称:AutoAnnotateApp，代码行数:5，代码来源:CreateAnnotationSetTask.java

示例5: processCallResponse

import org.cytoscape.view.model.CyNetworkView; //导入方法依赖的package包/类
@Override
public void processCallResponse(ExtensionCall call, Object callRetValue) {
	
	List<Double> values = (List<Double>)callRetValue;
	
	CyTable defNodeTab = currNet.getDefaultNodeTable();
	CyNetworkView networkView = getPlugin().getCyNetViewMgr().getNetworkViews(currNet).iterator().next();
	
	for(int i = 0; i < (values.size() / 3); ++i){
		Long neoid = values.get(i*3).longValue();
		Double x = values.get(i*3+1);
		Double y = values.get(i*3+2);
		
		
		Set<CyNode> nodeSet = CyUtils.getNodesWithValue(currNet, defNodeTab, "neoid", neoid);
		CyNode n = nodeSet.iterator().next();
		
		View<CyNode> nodeView = networkView.getNodeView(n);
		nodeView.setVisualProperty(BasicVisualLexicon.NODE_X_LOCATION, x);
		nodeView.setVisualProperty(BasicVisualLexicon.NODE_Y_LOCATION, y);
		
		CyUtils.updateVisualStyle(getPlugin().getVisualMappingManager(), networkView, currNet);
	}
	

}
开发者ID:gsummer，项目名称:cyNeo4j，代码行数:27，代码来源:SimpleLayoutExtExec.java

示例6: serializeNetwork

import org.cytoscape.view.model.CyNetworkView; //导入方法依赖的package包/类
protected final void serializeNetwork(final CyNetwork network, final CyNetworkView view, JsonGenerator jgen, SerializerProvider provider)
		throws IOException, JsonProcessingException {

	// Write array
	final List<CyNode> nodes = network.getNodeList();
	final List<CyEdge> edges = network.getEdgeList();

	final Map<CyNode, Long> node2Index = new HashMap<CyNode, Long>();

	jgen.useDefaultPrettyPrinter();

	jgen.writeStartObject();

	long index = 0;
	jgen.writeArrayFieldStart(NODE);
	for (final CyNode node : nodes) {
		jgen.writeStartObject();

		jgen.writeStringField(ID, node.getSUID().toString());
		if(view != null) {
			// View is available.  Pick (x,y)
			final View<CyNode> nodeView = view.getNodeView(node);
			jgen.writeNumberField(X, nodeView.getVisualProperty(BasicVisualLexicon.NODE_X_LOCATION));
			jgen.writeNumberField(Y, nodeView.getVisualProperty(BasicVisualLexicon.NODE_Y_LOCATION));
		}

		// Write CyRow in "data" field
		jgen.writeObject(network.getRow(node));

		jgen.writeEndObject();
		node2Index.put(node, index);
		index++;
	}
	jgen.writeEndArray();

	jgen.writeArrayFieldStart(EDGE);
	for (final CyEdge edge : edges) {
		jgen.writeStartObject();

		jgen.writeStringField(ID, edge.getSUID().toString());
		jgen.writeNumberField(SOURCE, node2Index.get(edge.getSource()));
		jgen.writeNumberField(TARGET, node2Index.get(edge.getTarget()));

		// Write CyRow in "data" field
		jgen.writeObject(network.getRow(edge));

		jgen.writeEndObject();

	}
	jgen.writeEndArray();

	jgen.writeEndObject();
}
开发者ID:keiono，项目名称:cytoscape-d3，代码行数:54，代码来源:D3JsonBuilder.java

示例7: generateNetworkView

import org.cytoscape.view.model.CyNetworkView; //导入方法依赖的package包/类
protected CyNetworkView generateNetworkView() throws Exception {
	final CyNetwork network1 = support.getNetwork();
	CyNode n1 = network1.addNode();
	CyNode n2 = network1.addNode();
	CyNode n3 = network1.addNode();

	// Not connected
	CyNode n4 = network1.addNode();
	CyNode n5 = network1.addNode();

	suid2nodeMap.put(n1.getSUID(), n1);
	suid2nodeMap.put(n2.getSUID(), n2);
	suid2nodeMap.put(n3.getSUID(), n3);
	suid2nodeMap.put(n4.getSUID(), n4);
	suid2nodeMap.put(n5.getSUID(), n5);

	CyEdge e1 = network1.addEdge(n1, n2, true);
	CyEdge e2 = network1.addEdge(n2, n3, true);
	CyEdge e3 = network1.addEdge(n1, n3, true);
	CyEdge e1self = network1.addEdge(n1, n1, true);

	suid2edgeMap.put(e1.getSUID(), e1);
	suid2edgeMap.put(e2.getSUID(), e2);
	suid2edgeMap.put(e3.getSUID(), e3);
	suid2edgeMap.put(e1self.getSUID(), e1self);

	network1.getRow(n1).set(CyNetwork.NAME, "n1");
	network1.getRow(n2).set(CyNetwork.NAME, "n2: 日本語テスト");
	network1.getRow(n3).set(CyNetwork.NAME, "n3");
	network1.getRow(n4).set(CyNetwork.NAME, "n4: Alone");
	network1.getRow(n5).set(CyNetwork.NAME, "n5");
	
	network1.getDefaultNodeTable().createColumn("DoubleTest", Double.class, false);
	network1.getDefaultNodeTable().createColumn("IntTest", Integer.class, false);
	network1.getDefaultNodeTable().createListColumn("StringListTest", String.class, false);
	network1.getRow(n1).set("DoubleTest", 10.2d);
	network1.getRow(n1).set("IntTest", 3);
	List<String> list = new ArrayList<String>();
	list.add("a");
	list.add("b");
	network1.getRow(n1).set("StringListTest", list);

	network1.getRow(e1).set(CyNetwork.NAME, "e1");
	network1.getRow(e2).set(CyNetwork.NAME, "エッジ2");
	network1.getRow(e3).set(CyNetwork.NAME, "e3");
	network1.getRow(e1self).set(CyNetwork.NAME, "e1self");

	final CyNetworkView view = support.getNetworkViewFactory().createNetworkView(network1);
	
	// Create some visual properties
	final View<CyNode> view1 = view.getNodeView(n1);
	view1.setVisualProperty(BasicVisualLexicon.NODE_X_LOCATION, 50d);
	view1.setVisualProperty(BasicVisualLexicon.NODE_Y_LOCATION, 50d);
	
	assertEquals(5, view.getModel().getNodeCount());
	assertEquals(4, view.getModel().getEdgeCount());

	return view;
}
开发者ID:keiono，项目名称:cytoscape-d3，代码行数:60，代码来源:D3WriterTest.java

示例8: applyXYMap

import org.cytoscape.view.model.CyNetworkView; //导入方法依赖的package包/类
public void applyXYMap(Map<String,List<Double>> xyMap, CyNetwork currNetwork, CyApplicationManager manager){

		CyNetworkView currNetworkView2 = manager.getCurrentNetworkView();

		List<CyNode> currNodes = currNetwork.getNodeList();
		for (CyNode node:currNodes){


			String nName=currNetwork.getRow(node).get("name", String.class);

			for (Map.Entry<String, List<Double>> entry : xyMap.entrySet()) {
				String key = entry.getKey();

				if (key.equals(nName)){
					List<Double> values = entry.getValue();
					View<CyNode> currNodeView=  currNetworkView2.getNodeView(node) ;

					currNodeView.setVisualProperty(BasicVisualLexicon.NODE_X_LOCATION, values.get(0));
					currNodeView.setVisualProperty(BasicVisualLexicon.NODE_Y_LOCATION, values.get(1));


				}

			}
		}
		currNetworkView2.updateView();
		currNetworkView2.fitContent();
	}
开发者ID:sysbio-curie，项目名称:DeDaL，代码行数:29，代码来源:DedalMethods.java

示例9: doMyLayout

import org.cytoscape.view.model.CyNetworkView; //导入方法依赖的package包/类
public void doMyLayout (double pourcentage){
undoSlider.setPourcentage(pourcentage);
	//System.out.println("LIST in do Layout " );
	//dMet.getNetworkList(adapter);
	final CyApplicationManager manager = adapter.getCyApplicationManager();

	final CyNetworkManager netmanager = adapter.getCyNetworkManager();
	
	CyNetworkView currNetworkView = manager.getCurrentNetworkView();
	//System.out.println(" do layout p " + pourcentage);

	CyNetwork currNetwork = manager.getCurrentNetwork();
	
	
	//CyTable myreftable = myrefnetwork.getDefaultNodeTable();
	List<CyNode> currNodes = currNetwork.getNodeList();

	   
			for (CyNode pcaNode:currNodes){
				
				String pcaName = currNetwork.getRow(pcaNode).get("name", String.class);
				//System.out.println("name  " + pcaName);
			for (Map.Entry<String, List<Double>> pcaEntry : netMap2.entrySet()) {
				
				String pcaKey = pcaEntry.getKey();
				
				
				// to be given by user p%
				
				for (Map.Entry<String, List<Double>> currEntry : currNetMap.entrySet()) {
					String currKey = currEntry.getKey();
					//System.out.println("pcaKey " + pcaKey);
					//System.out.println("currKey " + currKey);
					if ((pcaKey.equals(currKey)) &&  (pcaKey.equals(pcaName))) {
						//System.out.println("pcaKey " + pcaKey);
						//System.out.println("currKey " + currKey);
						List<Double> pcaValues = pcaEntry.getValue();
						Double xpca = pcaValues.get(0);
						Double ypca = pcaValues.get(1);
						List<Double> currValues = currEntry.getValue();
						Double xcurr = currValues.get(0);
						Double ycurr = currValues.get(1);
						dMet.computePoint (xpca, ypca, xcurr, ycurr, pourcentage);
						
						
						Double xNew=dMet.xNew;
						Double yNew=dMet.yNew;
					
						
						
						View<CyNode> pcaNodeView=  currNetworkView.getNodeView(pcaNode) ;	
						
						
							
							pcaNodeView.setVisualProperty(BasicVisualLexicon.NODE_X_LOCATION, xNew);
							pcaNodeView.setVisualProperty(BasicVisualLexicon.NODE_Y_LOCATION, yNew);
							
							
							
						
					}
				}
			}
			
			}
			currNetworkView.updateView();
			currNetworkView.fitContent();
			//AbstractCyEdit myCyEdit = new UndoSlider();
			
			
			//undo.postEdit(myCyEdit);
}
开发者ID:sysbio-curie，项目名称:DeDaL，代码行数:73，代码来源:TransitionalLayout.java


注：本文中的org.cytoscape.view.model.CyNetworkView.getNodeView方法示例由纯净天空整理自Github/MSDocs等开源代码及文档管理平台，相关代码片段筛选自各路编程大神贡献的开源项目，源码版权归原作者所有，传播和使用请参考对应项目的License；未经允许，请勿转载。