Java CyApplicationManager.getCurrentNetwork方法代码示例

import org.cytoscape.application.CyApplicationManager; //导入方法依赖的package包/类
public void makeMap (CyApplicationManager manager){

		netMap=new HashMap<String,List<Double>>();
		networkView = manager.getCurrentNetworkView();
		network = manager.getCurrentNetwork();
		nameNetwork = network.getRow(network).get("name", String.class);
		//System.out.println("curr net 2 one" + network);
		List<CyNode> nodes = network.getNodeList();
		//networkView.setVisualProperty(BasicVisualLexicon.NETWORK_CENTER_X_LOCATION, 0.0);
		//networkView.setVisualProperty(BasicVisualLexicon.NETWORK_CENTER_Y_LOCATION, 0.0);


		for (CyNode node: nodes ){
			String name = network.getRow(node).get("name", String.class);
			nodeView= networkView.getNodeView(node) ;
			List<Double> XY = new ArrayList<Double>();
			Double xref = nodeView.getVisualProperty(BasicVisualLexicon.NODE_X_LOCATION);
			Double yref = nodeView.getVisualProperty(BasicVisualLexicon.NODE_Y_LOCATION);

			XY.add(xref);
			XY.add(yref);
			netMap.put(name, XY);
		}
	}
 

import org.cytoscape.application.CyApplicationManager; //导入方法依赖的package包/类
public static boolean checkNetwork(CyApplicationManager applicationManager) {
    boolean result = false;
    
    CyNetworkView view = applicationManager.getCurrentNetworkView();
    CyNetwork network = applicationManager.getCurrentNetwork();
        
    // Cannot continue if either of these is null.
    if (network == null || view == null) {
        JOptionPane.showMessageDialog(
                null,
                "No network and/or view to link to.",
                "Missing network",
                JDialog.ERROR);
    } else {
        result = true;
    }
    
    return result;
}
 

import org.cytoscape.application.CyApplicationManager; //导入方法依赖的package包/类
public ControlPanel(CyNetworkManager networkManager,
		CyRootNetworkManager rootNetworkManager,
		CyApplicationManager applicationManager,
		CyGroupManager groupManager,
		CyGroupFactory groupFactory,
		TaskManager taskManager) {

	this.networkManager = networkManager;
	this.rootNetworkManager = rootNetworkManager;
	this.applicationManager = applicationManager;
	this.groupManager = groupManager;
	this.groupFactory = groupFactory;
	this.taskManager = taskManager;
	this.networkSettings = new HashMap<Long, NetworkSettings>();
	this.itemChangeListener = new ItemChangeListener();
	this.nSelectedNodes = 0;
	this.currentNetworkSUID = null;

	initUserInterface();
	
	CyNetwork network = applicationManager.getCurrentNetwork();
	if (network != null) {
		this.currentNetworkSUID = network.getSUID();
		this.networkSettings.put(currentNetworkSUID, new NetworkSettings(network));

		updateUserInterface();
		updateFeedbackTableModel();
		updateButtons();
	} else {
		disableUserInterface();
	}

	this.setVisible(true);
}
 

import org.cytoscape.application.CyApplicationManager; //导入方法依赖的package包/类
public void doMyLayout (double pourcentage){
undoSlider.setPourcentage(pourcentage);
	//System.out.println("LIST in do Layout " );
	//dMet.getNetworkList(adapter);
	final CyApplicationManager manager = adapter.getCyApplicationManager();

	final CyNetworkManager netmanager = adapter.getCyNetworkManager();
	
	CyNetworkView currNetworkView = manager.getCurrentNetworkView();
	//System.out.println(" do layout p " + pourcentage);

	CyNetwork currNetwork = manager.getCurrentNetwork();
	
	
	//CyTable myreftable = myrefnetwork.getDefaultNodeTable();
	List<CyNode> currNodes = currNetwork.getNodeList();

	   
			for (CyNode pcaNode:currNodes){
				
				String pcaName = currNetwork.getRow(pcaNode).get("name", String.class);
				//System.out.println("name  " + pcaName);
			for (Map.Entry<String, List<Double>> pcaEntry : netMap2.entrySet()) {
				
				String pcaKey = pcaEntry.getKey();
				
				
				// to be given by user p%
				
				for (Map.Entry<String, List<Double>> currEntry : currNetMap.entrySet()) {
					String currKey = currEntry.getKey();
					//System.out.println("pcaKey " + pcaKey);
					//System.out.println("currKey " + currKey);
					if ((pcaKey.equals(currKey)) &&  (pcaKey.equals(pcaName))) {
						//System.out.println("pcaKey " + pcaKey);
						//System.out.println("currKey " + currKey);
						List<Double> pcaValues = pcaEntry.getValue();
						Double xpca = pcaValues.get(0);
						Double ypca = pcaValues.get(1);
						List<Double> currValues = currEntry.getValue();
						Double xcurr = currValues.get(0);
						Double ycurr = currValues.get(1);
						dMet.computePoint (xpca, ypca, xcurr, ycurr, pourcentage);
						
						
						Double xNew=dMet.xNew;
						Double yNew=dMet.yNew;
					
						
						
						View<CyNode> pcaNodeView=  currNetworkView.getNodeView(pcaNode) ;	
						
						
							
							pcaNodeView.setVisualProperty(BasicVisualLexicon.NODE_X_LOCATION, xNew);
							pcaNodeView.setVisualProperty(BasicVisualLexicon.NODE_Y_LOCATION, yNew);
							
							
							
						
					}
				}
			}
			
			}
			currNetworkView.updateView();
			currNetworkView.fitContent();
			//AbstractCyEdit myCyEdit = new UndoSlider();
			
			
			//undo.postEdit(myCyEdit);
}