Java CASException.printStackTrace方法代码示例

import org.apache.uima.cas.CASException; //导入方法依赖的package包/类
@Override	
public void process(JCas jcas)
throws AnalysisEngineProcessException {
	try {
		FSIterator ccptaIterator = jcas.getAnnotationIndex(CCPTextAnnotation.type).iterator();
		while (ccptaIterator.hasNext()) {
				CCPTextAnnotation ccpta = (CCPTextAnnotation) ccptaIterator.next();
			String ccptaMentionName = ccpta.getClassMention().getMentionName();
			if (ccptaMentionName != null) {
				Matcher m = mentionTypeInPattern.matcher(ccptaMentionName);
				if ( m.matches() ) {
					CCPClassMention ccpcm = ccpta.getClassMention();
					ccpcm.setMentionName(mentionTypeOut);
					UIMA_Util.addSlotValue(ccpcm, "ID", ccptaMentionName);
				}
			}
		}
	} catch (CASException e) {
		e.printStackTrace();
		throw new AnalysisEngineProcessException();
	}
}
 

import org.apache.uima.cas.CASException; //导入方法依赖的package包/类
/**
 * Test the transfer of information from one UIMA TextAnnotation (CCPTextAnnotation) to another
 * 
 */
@Test
public void testSwapCCPTextAnnotation2CCPTextAnnotation() {
	CCPTextAnnotation swapToAnnotation = new CCPTextAnnotation(jcas);
	try {
		UIMA_Util.swapAnnotationInfo(testCCPTextAnnotation1, swapToAnnotation);
	} catch (CASException ce) {
		ce.printStackTrace();
		fail("CASException while swapping annotation info");
	}

	assertEquals(testCCPTextAnnotation1.getAnnotationID(), swapToAnnotation.getAnnotationID());
	assertEquals(testCCPTextAnnotation1.getBegin(), swapToAnnotation.getBegin());
	assertEquals(testCCPTextAnnotation1.getEnd(), swapToAnnotation.getEnd());
	assertEquals(testCCPTextAnnotation1.getDocumentSectionID(), swapToAnnotation.getDocumentSectionID());
	assertEquals(testCCPTextAnnotation1.getNumberOfSpans(), swapToAnnotation.getNumberOfSpans());
	assertEquals(testCCPTextAnnotation1.getSpans().size(), swapToAnnotation.getSpans().size());
	assertEquals(testCCPTextAnnotation1.getClassMention().getMentionName(), swapToAnnotation.getClassMention()
			.getMentionName());
	assertEquals(testCCPTextAnnotation1.getClassMention().getSlotMentions().size(), swapToAnnotation
			.getClassMention().getSlotMentions().size());
}
 

import org.apache.uima.cas.CASException; //导入方法依赖的package包/类
@Override
public void process(JCas jcas) throws AnalysisEngineProcessException {
	JCas newView;
	try {
		newView = jcas.createView(viewName);
	} catch (CASException e) {
		e.printStackTrace();
		throw new AnalysisEngineProcessException(e);
	}

	JCasBuilder builder = new JCasBuilder(newView);

	for (Annotation a : JCasUtil.select(jcas, annotationClass)) {
		int relativ = -a.getBegin() + builder.getPosition();
		Origin o = builder.add(a.getCoveredText(), Origin.class);
		o.setOffset(a.getBegin());

		for (Class<Annotation> subClass : subAnnotations) {
			for (Annotation sub : JCasUtil.selectCovered(subClass, a)) {
				int tgtBegin = sub.getBegin() + relativ, tgtEnd = sub.getEnd() + relativ;
				Annotation tgt = AnnotationFactory.createAnnotation(newView, sub.getBegin() + relativ,
						sub.getEnd() + relativ, subClass);

				for (Feature feature : sub.getType().getFeatures()) {
					if (feature.getRange().isPrimitive())
						tgt.setFeatureValueFromString(feature, sub.getFeatureValueAsString(feature));
				}
				tgt.setBegin(tgtBegin);
				tgt.setEnd(tgtEnd);
			}
		}
	}
	builder.close();
}
 

import org.apache.uima.cas.CASException; //导入方法依赖的package包/类
/**
 * Get the name of the artifact whatever it appears in any annotation index of associated view
 * @param aJCas
 * @return
 * @throws AnalysisEngineProcessException 
 * @throws CASRuntimeException 
 */
public static String getTheArtifactName(JCas aJCas) throws CASRuntimeException, AnalysisEngineProcessException {
	String artifactName = "";
	try {
		Iterator<JCas>	jCasViewIter =  aJCas.getViewIterator();

		while (jCasViewIter.hasNext()) {
			JCas aJCasView = jCasViewIter.next();
			String currentArtifactViewName = getArtifactViewName(aJCasView);
			//System.out.println("Debug: one view of the current JCas >"+aJCasView.getViewName()+"< and the artifact name is >"+currentArtifactViewName+"<");

			if (currentArtifactViewName != null) 
				if (!currentArtifactViewName.equalsIgnoreCase("")) artifactName = currentArtifactViewName;

		}
	} catch (CASException e1) {
		// TODO Auto-generated catch block
		e1.printStackTrace();
	} 

	return artifactName;
}
 

import org.apache.uima.cas.CASException; //导入方法依赖的package包/类
/**
	 * Get the name of the artifact whatever it appears in any annotation index of associated view
	 * @param aJCas
	 * @return
	 * @throws AnalysisEngineProcessException 
	 * @throws CASRuntimeException 
	 */
  public static String getTheArtifactName(JCas aJCas)
    throws CASRuntimeException, AnalysisEngineProcessException
  {
/* 217 */     String artifactName = "";
    try {
/* 219 */       Iterator<JCas> jCasViewIter = aJCas.getViewIterator();
      
/* 221 */       while (jCasViewIter.hasNext()) {
/* 222 */         JCas aJCasView = (JCas)jCasViewIter.next();
/* 223 */         String currentArtifactViewName = getArtifactViewName(aJCasView);
        

/* 226 */         if ((currentArtifactViewName != null) && 
/* 227 */           (!currentArtifactViewName.equalsIgnoreCase(""))) artifactName = currentArtifactViewName;
      }
    }
    catch (CASException e1)
    {
/* 232 */       e1.printStackTrace();
    }
    
/* 235 */     return artifactName;
  }
 

import org.apache.uima.cas.CASException; //导入方法依赖的package包/类
/**
 * Copy the sofa data, the mimeType and the DocumentLanguage
 * 
 * @param targetView
 * @param aFromViewName 
 */
public void copySofaData (JCas targetView, String aFromViewName) {
	try {
		String sofaMime = sourceJCas.getView(aFromViewName).getCas().getSofa().getSofaMime();

		if (sourceJCas.getView(aFromViewName).getCas().getDocumentText() != null) {
			targetView.setSofaDataString(sourceJCas.getView(aFromViewName).getCas().getDocumentText(), sofaMime);
			if (debug) System.out.println("Debug: ViewRenamer next targetView.setSofaDataString(sourceJCas.getView(getFromViewName()).getCas().getDocumentText(), sofaMime);");
		} else if (sourceJCas.getView(aFromViewName).getCas().getSofaDataURI() != null) {
			targetView.setSofaDataURI(sourceJCas.getView(aFromViewName).getCas().getSofaDataURI(), sofaMime);
			if (debug) System.out.println("Debug: ViewRenamer next targetView.setSofaDataURI(sourceJCas.getView(getFromViewName()).getCas().getSofaDataURI(), sofaMime);");
		} else if (sourceJCas.getView(aFromViewName).getCas().getSofaDataArray() != null) {
			//targetView.setSofaDataArray(copier.copyFs(sourceJCas.getView(getFromViewName()).getCas().getSofaDataArray()), sofaMime);
			targetView.setSofaDataArray(copyFs(sourceJCas.getView(aFromViewName).getCas().getSofaDataArray(), aFromViewName), sofaMime);
			if (debug) System.out.println("Debug: ViewRenamer next targetView.setSofaDataArray(copyFs(sourceJCas.getView(getFromViewName()).getCas().getSofaDataArray()), sofaMime);");
		}
		// nh
		// je suppose q le Sofa (et ses traits mimeType, sofaString... ) et le DocumentAnnotation (et son trait sofa et langage) sont définis à ce moment là et que l'on a pas besoin de le faire
		targetView.setDocumentLanguage(sourceJCas.getView(aFromViewName).getCas().getDocumentLanguage());
	} catch (CASException e) {
		// TODO Auto-generated catch block
		e.printStackTrace();
	}


}
 

import org.apache.uima.cas.CASException; //导入方法依赖的package包/类
public void getNext(CAS aCas) throws IOException, CollectionException {
	JCas jcas;
	try {
		Tuple nextTuple = bagIterator.next();
		jcas = aCas.getJCas();
		DocumentID documentIDAnnotation = new DocumentID(jcas);
		String docID = (String) nextTuple.get(0);
		documentIDAnnotation.setDocumentID(docID);
		documentIDAnnotation.addToIndexes();

		String text = (String) nextTuple.get(1);
		jcas.setDocumentText(text);
	} catch (CASException e) {
		e.printStackTrace();
	} finally {
		numTuplesProcessed++;
	}
}
 

import org.apache.uima.cas.CASException; //导入方法依赖的package包/类
public ComplexSlotMention createComplexSlotMention(String slotMentionName) {
	CCPComplexSlotMention ccpCSM = null;
	try {
		ccpCSM = new CCPComplexSlotMention(wrappedCM.getCAS().getJCas());
	} catch (CASException e) {
		e.printStackTrace();
	}
	ccpCSM.setMentionName(slotMentionName);
	return new WrappedCCPComplexSlotMention(ccpCSM);
}
 

import org.apache.uima.cas.CASException; //导入方法依赖的package包/类
public static <T extends AnnotationMetadataProperty> Collection<T> getAnnotationProperties(
		CCPTextAnnotation ccpTA, Class<T> annotationPropertyClass) {
	try {
		JCas jcas = ccpTA.getCAS().getJCas();
		return getAnnotationProperties(ccpTA, annotationPropertyClass, jcas);
	} catch (CASException e) {
		e.printStackTrace();
		return null;
	}
}
 

import org.apache.uima.cas.CASException; //导入方法依赖的package包/类
@Test
public void testTrimCCPTextAnnotation() {
	// System.out.println("BEFORE TRIM: " + testCcpTA.getCoveredText());
	try {
		UIMA_Annotation_Util.trimCCPTextAnnotation(testCcpTA);
	} catch (CASException e) {
		e.printStackTrace();
		fail("Test failed.. exception while trimming CCPTextAnnotation");
	}
	// System.out.println("AFTER TRIM:  " + testCcpTA.getCoveredText());

	assertEquals("Annotation text", testCcpTA.getCoveredText());

}
 

import org.apache.uima.cas.CASException; //导入方法依赖的package包/类
public static void addWSTokensToView(JCas aCas, String viewName)
{
	try {
		JCas theView = aCas.getView(viewName);
		String enText = theView.getDocumentText();
		
		StringTokenizer st = new StringTokenizer(enText);
		
		int pos=0;
		while(st.hasMoreTokens())
		{
			String thisTok = st.nextToken();
			int begin = enText.indexOf(thisTok, pos);
			int end = begin + thisTok.length();
			pos = end;
			
			Token tokenAnnot = new Token(theView); // note that it is from the "View", not top CAS...
			tokenAnnot.setBegin(begin);
			tokenAnnot.setEnd(end);
			tokenAnnot.addToIndexes(); //.. so this attach itself to "View Index", and it can be itereated from the View.
			
			}
		}
	catch (CASException e)
	{
		//if no such view name exist in the CAS, JCAS.getView() raises an exception.
		e.printStackTrace();
	}

}
 

import org.apache.uima.cas.CASException; //导入方法依赖的package包/类
/**
 * Check for an error in the return status of the processed CAS. Return true
 * if there is an error.
 *
 * @param aCas    CAS that was processed
 * @param aStatus Status object that contains the exception if one is thrown
 * @return True if an error was returned, False otherwise
 */
protected boolean checkForError(CAS aCas, EntityProcessStatus aStatus) {
    if (aStatus != null && aStatus.isException()) {
        List<Exception> exceptions = aStatus.getExceptions();
        String errors = "";
        this.lastException = "";
        for (Exception exception : exceptions) {
            Writer result = new StringWriter();
            PrintWriter printWriter = new PrintWriter(result);
            exception.printStackTrace(printWriter);
            errors += result.toString() + "\n";
            errors += exception.toString() + "\n---\n";

        }// for

        this.lastException = errors;

        // Write exception out to file if the output directory is set.
        if (logErrors) {
            try {
                LOG.error("ERROR processing CAS: " + this.getReferenceLocation(aCas.getJCas()) + "\n" + errors);
            } catch (CASException e) {
                e.printStackTrace();
            }
        }// if

        return true;
    }// if aStatus != null && isException
    return false;
}
 

import org.apache.uima.cas.CASException; //导入方法依赖的package包/类
/**
 * Copy the sofa data, the mimeType and the DocumentLanguage
 * 
 * @param targetView
 * @param aFromViewName
 */
public void copySofaData(CAS targetView, String aFromViewName) {
	try {
		String sofaMime = sourceJCas.getView(aFromViewName).getCas()
				.getSofa().getSofaMime();

		if (sourceJCas.getView(aFromViewName).getCas().getDocumentText() != null) {
			targetView.setSofaDataString(sourceJCas.getView(aFromViewName)
					.getCas().getDocumentText(), sofaMime);
			// if (debug)
			// System.out.println("Debug: ViewRenamer next targetView.setSofaDataString(sourceJCas.getView(getFromViewName()).getCas().getDocumentText(), sofaMime);");
		} else if (sourceJCas.getView(aFromViewName).getCas()
				.getSofaDataURI() != null) {
			targetView.setSofaDataURI(sourceJCas.getView(aFromViewName)
					.getCas().getSofaDataURI(), sofaMime);
			// if (debug)
			// System.out.println("Debug: ViewRenamer next targetView.setSofaDataURI(sourceJCas.getView(getFromViewName()).getCas().getSofaDataURI(), sofaMime);");
		} else if (sourceJCas.getView(aFromViewName).getCas()
				.getSofaDataArray() != null) {
			// targetView.setSofaDataArray(copier.copyFs(sourceJCas.getView(getFromViewName()).getCas().getSofaDataArray()),
			// sofaMime);
			targetView.setSofaDataArray(
					copyFs(sourceJCas.getView(aFromViewName).getCas()
							.getSofaDataArray(), aFromViewName), sofaMime);
			// if (debug)
			// System.out.println("Debug: ViewRenamer next targetView.setSofaDataArray(copyFs(sourceJCas.getView(getFromViewName()).getCas().getSofaDataArray()), sofaMime);");
		}
		// nh
		// je suppose q le Sofa (et ses traits mimeType, sofaString... ) et
		// le DocumentAnnotation (et son trait sofa et langage) sont définis
		// à ce moment là et que l'on a pas besoin de le faire
		targetView.setDocumentLanguage(sourceJCas.getView(aFromViewName)
				.getCas().getDocumentLanguage());
	} catch (CASException e) {
		// TODO Auto-generated catch block
		e.printStackTrace();
	}

}
 

import org.apache.uima.cas.CASException; //导入方法依赖的package包/类
/**
 * Process the given CAS object.
 */
public void processCas(CAS cas) {

	try {
		JCas jcas = cas.getJCas();
	} catch (CASException e) {
		// TODO Auto-generated catch block
		e.printStackTrace();
	}


}
 

import org.apache.uima.cas.CASException; //导入方法依赖的package包/类
@SuppressWarnings("unused")
public static void printTHInfo(JCas aCas)
{
	try {
		JCas tView = aCas.getView("TextView");
		JCas hView = aCas.getView("HypothesisView"); // again, if the view names are not there, it will raise exceptions
		
		//Now we need to get Entailment.Pair, to find out about
		//the entailment problem.
		
		//If the goal type is an annotation that has begin / end (most of them. Tokens, POSes, NERs ..)
		//1) use getAnnotationsIndex and iterate over them. It returns an ordered iterator.
		
		//If the target type is *not* annotations (i.e. EntailmentMetadata, Pair)
		//2) getJFSIndexRepository().getAllIndexedFS()
		//This can be used to fetch any type instances. (including annotation and non annotation)
		//Unlike getAnnotationsIndex, the returned data has no orders.
		//(Only a few ECXITEMENT types are non-annotation: including Entailment.EntailmentMetadata, and Entailment.Pair.)
		
		//Since we need to get Entailment.Pair, use getAllIndexedFS
		FSIterator<TOP> pairIter = aCas.getJFSIndexRepository().getAllIndexedFS(Pair.type);
		//note that we get it from outside "wrapping" CAS, not from the view CAS.
		
		Pair p=null;
		int i=0;
		System.out.println("====");
		while(pairIter.hasNext())
		{
			p = (Pair) pairIter.next();
			i++;
			System.out.printf("PairID: %s\n", p.getPairID());
			System.out.printf("Text of the pair: %s\n", p.getText().getCoveredText());
			//note that Text annotation is actually on TextView.
			System.out.printf("Hypothesis of the pair: %s\n", p.getHypothesis().getCoveredText());
			//note that Hypothesis annotation is actually on HypothesisView. You can access it from pair.
			System.out.printf("GoldAnswer of the pair: %s\n", p.getGoldAnswer());
		}
		System.out.printf("----\nThe CAS had %d pairs.\n====\n", i);
	
	}
	catch (CASException e)
	{
		e.printStackTrace();
	}

}