当前位置: 首页>>代码示例>>Java>>正文

Java FilenameUtils.getFullPath方法代码示例

本文整理汇总了Java中org.apache.commons.io.FilenameUtils.getFullPath方法的典型用法代码示例。如果您正苦于以下问题：Java FilenameUtils.getFullPath方法的具体用法？Java FilenameUtils.getFullPath怎么用？Java FilenameUtils.getFullPath使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类org.apache.commons.io.FilenameUtils的用法示例。


在下文中一共展示了FilenameUtils.getFullPath方法的15个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Java代码示例。

示例1: JavaSerializationCluster2CurveRead

import org.apache.commons.io.FilenameUtils; //导入方法依赖的package包/类
private boolean JavaSerializationCluster2CurveRead() {
    if (!new File(FilenameUtils.getFullPath(ParentmzXMLName) + FilenameUtils.getBaseName(ParentmzXMLName) + "_Peak/" + FilenameUtils.getBaseName(ScanCollectionName) + "_Clus2Cur.ser").exists()) {
        return false;
    }
    try {
        Logger.getRootLogger().debug("Reading PrecursorFragmentCorr serialization from file:" + FilenameUtils.getBaseName(ScanCollectionName) + "_Clus2Cur.ser...");
        FileInputStream fileIn = new FileInputStream(FilenameUtils.getFullPath(ParentmzXMLName) + FilenameUtils.getBaseName(ParentmzXMLName) + "_Peak/" + FilenameUtils.getBaseName(ScanCollectionName) + "_Clus2Cur.ser");
        ObjectInputStream in = new ObjectInputStream(fileIn);
        FragmentsClu2Cur = (HashMap<Integer, ArrayList<PrecursorFragmentPairEdge>>) in.readObject();
        in.close();
        fileIn.close();

    } catch (Exception ex) {
        Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
        return false;
    }
    return true;
}
开发者ID:YcheCourseProject，项目名称:DIA-Umpire-Maven，代码行数:19，代码来源:LCMSPeakDIAMS2.java

示例2: JavaSerializationPeakClusterRead

import org.apache.commons.io.FilenameUtils; //导入方法依赖的package包/类
private boolean JavaSerializationPeakClusterRead() {
    if (!new File(FilenameUtils.getFullPath(ParentmzXMLName) + FilenameUtils.getBaseName(ParentmzXMLName) + "_Peak/" + FilenameUtils.getBaseName(ScanCollectionName) + "_PeakCluster.ser").exists()) {
        return false;
    }
    try {
        Logger.getRootLogger().info("Reading PeakCluster serialization from file:" + FilenameUtils.getBaseName(ScanCollectionName) + "_PeakCluster.ser...");

        FileInputStream fileIn = new FileInputStream(FilenameUtils.getFullPath(ParentmzXMLName) + FilenameUtils.getBaseName(ParentmzXMLName) + "_Peak/" + FilenameUtils.getBaseName(ScanCollectionName) + "_PeakCluster.ser");
        ObjectInputStream in = new ObjectInputStream(fileIn);
        PeakClusters = (ArrayList<PeakCluster>) in.readObject();
        in.close();
        fileIn.close();
    } catch (Exception ex) {
        Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
        return false;
    }
    return true;
}
开发者ID:YcheCourseProject，项目名称:DIA-Umpire-Maven，代码行数:19，代码来源:LCMSPeakBase.java

示例3: ReadDIASettingSerialization

import org.apache.commons.io.FilenameUtils; //导入方法依赖的package包/类
public static DIA_Setting ReadDIASettingSerialization(String filepath) {
    if (!new File(FilenameUtils.getFullPath(filepath) + FilenameUtils.getBaseName(filepath) + "_diasetting.ser").exists()) {
        return null;
    }
    try {
        Logger.getRootLogger().debug("Reading DIA setting from file:" + FilenameUtils.getFullPath(filepath) + FilenameUtils.getBaseName(filepath) + "_diasetting.ser...");

        FileInputStream fileIn = new FileInputStream(FilenameUtils.getFullPath(filepath) + FilenameUtils.getBaseName(filepath) + "_diasetting.ser");
        ObjectInputStream in = new ObjectInputStream(fileIn);
        DIA_Setting setting = (DIA_Setting) in.readObject();
        in.close();
        fileIn.close();
        return setting;

    } catch (Exception ex) {
        Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
        return null;
    }
}
开发者ID:YcheCourseProject，项目名称:DIA-Umpire-Maven，代码行数:20，代码来源:DIA_Setting.java

示例4: LibraryMatchRead

import org.apache.commons.io.FilenameUtils; //导入方法依赖的package包/类
public static TargetMatchScoring LibraryMatchRead(String Filename, String LibID) throws FileNotFoundException {

        if (!new File(FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + "_" + LibID + "_LibMatch.serFS").exists()) {
            return null;
        }
        TargetMatchScoring match = null;
        try {
            Logger.getRootLogger().info("Loading Target library match results to file:" + FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + "_" + LibID + "_LibMatch.serFS...");
            FileInputStream fileIn = new FileInputStream(FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + "_" + LibID + "_LibMatch.serFS");
            FSTObjectInput in = new FSTObjectInput(fileIn);
            match = (TargetMatchScoring) in.readObject();
            in.close();
            fileIn.close();
        } catch (Exception ex) {
            Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
            return null;
        }
        return match;
    }
开发者ID:YcheCourseProject，项目名称:DIA-Umpire-Maven，代码行数:20，代码来源:TargetMatchScoring.java

示例5: JavaSerializationCluster2CurveUnfragRead

import org.apache.commons.io.FilenameUtils; //导入方法依赖的package包/类
private boolean JavaSerializationCluster2CurveUnfragRead() {
    if (!new File(FilenameUtils.getFullPath(ParentmzXMLName) + FilenameUtils.getBaseName(ParentmzXMLName) + "_Peak/" + FilenameUtils.getBaseName(ScanCollectionName) + "_UnfClus2Cur.ser").exists()) {
        return false;
    }
    try {
        Logger.getRootLogger().debug("Reading UnfragPrecursorFragCorr serialization from file:" + FilenameUtils.getBaseName(ScanCollectionName) + "_UnfClus2Cur.ser...");
        FileInputStream fileIn = new FileInputStream(FilenameUtils.getFullPath(ParentmzXMLName) + FilenameUtils.getBaseName(ParentmzXMLName) + "_Peak/" + FilenameUtils.getBaseName(ScanCollectionName) + "_UnfClus2Cur.ser");
        ObjectInputStream in = new ObjectInputStream(fileIn);
        UnFragIonClu2Cur = (HashMap<Integer, ArrayList<PrecursorFragmentPairEdge>>) in.readObject();
        in.close();
        fileIn.close();

    } catch (Exception ex) {
        Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
        return false;
    }
    return true;
}
开发者ID:YcheCourseProject，项目名称:DIA-Umpire-Maven，代码行数:19，代码来源:LCMSPeakDIAMS2.java

示例6: FS_PeakClusterRead

import org.apache.commons.io.FilenameUtils; //导入方法依赖的package包/类
private boolean FS_PeakClusterRead() {
    if (!new File(FilenameUtils.getFullPath(ParentmzXMLName) + FilenameUtils.getBaseName(ParentmzXMLName) + "_Peak/" + FilenameUtils.getBaseName(ScanCollectionName) + "_PeakCluster.serFS").exists()) {
        return false;
    }
    try {
        Logger.getRootLogger().info("Reading PeakCluster serialization from file:" + FilenameUtils.getBaseName(ScanCollectionName) + "_PeakCluster.serFS...");

        FileInputStream fileIn = new FileInputStream(FilenameUtils.getFullPath(ParentmzXMLName) + FilenameUtils.getBaseName(ParentmzXMLName) + "_Peak/" + FilenameUtils.getBaseName(ScanCollectionName) + "_PeakCluster.serFS");
        FSTObjectInput in = new FSTObjectInput(fileIn);
        PeakClusters = (ArrayList<PeakCluster>) in.readObject();
        in.close();
        fileIn.close();
    } catch (Exception ex) {
        Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
        if (FS_PeakClusterRead_Old()) {
            WritePeakClusterSerialization();
            return true;
        }
        Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
        return false;
    }
    return true;
}
开发者ID:YcheCourseProject，项目名称:DIA-Umpire-Maven，代码行数:24，代码来源:LCMSPeakBase.java

示例7: Convert

import org.apache.commons.io.FilenameUtils; //导入方法依赖的package包/类
public void Convert() {
    try {
        String[] msconvertcmd = {msconvertpath, "--mzXML", "--32", "-z", SpectrumPath, "-o", FilenameUtils.getFullPath(SpectrumPath)};
        Process p = Runtime.getRuntime().exec(msconvertcmd);
        Logger.getRootLogger().info("MGF file coversion by msconvert.exe...." + SpectrumPath);
        Logger.getRootLogger().debug("Command: " + Arrays.toString(msconvertcmd));
        PrintThread printThread = new PrintThread(p);
        printThread.start();
        p.waitFor();
        if (p.exitValue() != 0) {
            Logger.getRootLogger().info("msconvert : " + SpectrumPath + " failed");
            //PrintOutput(p);
            return;
        }
    } catch (IOException | InterruptedException ex) {
        java.util.logging.Logger.getLogger(MSConvert.class.getName()).log(Level.SEVERE, null, ex);
    }
}
开发者ID:YcheCourseProject，项目名称:DIA-Umpire-Maven，代码行数:19，代码来源:MSConvert.java

示例8: getDownloadUrl

import org.apache.commons.io.FilenameUtils; //导入方法依赖的package包/类
/**
 * Get a signed url to view an attachment. The url will last 24 hours. The file name portion of the id is url escaped internally.
 *
 * @param id The id of the attachment.
 * @return Url
 */
public String getDownloadUrl(String id) {
    String filename = FilenameUtils.getName(id);
    String path = FilenameUtils.getFullPath(id);
    String escapedFullPath = FilenameUtils.concat(path, UrlEscapers.urlFragmentEscaper().escape(filename));
    return cloudStorage.generateSignedUrl(gcsDefaultBucket, escapedFullPath, DEFAULT_LINK_EXPIRY_DURATION);
}
开发者ID:3wks，项目名称:generator-thundr-gae-react，代码行数:13，代码来源:AttachmentService.java

示例9: ExportPepIonCSV

import org.apache.commons.io.FilenameUtils; //导入方法依赖的package包/类
private void ExportPepIonCSV(String folder) throws IOException {
    if (folder == null | "".equals(folder)) {
        folder = FilenameUtils.getFullPath(mzXMLFileName);
    }

    Logger.getRootLogger().info("Writing PepIon result to file:" + folder + FilenameUtils.getBaseName(mzXMLFileName) + "_PepIonIDs.csv...");
    FileWriter writer = new FileWriter(folder + FilenameUtils.getBaseName(mzXMLFileName) + "_PepIonIDs.csv");
    writer.write("PepIndex,Sequence,ModSeq,TPPModSeq,IsNonDegenerate,Charge,mz,IDRT,PeakRT,NoPSMs,MS1ClusIndex,MS2ClusIndex,PeakScore,PeakHeight1,PeakHeight2,PeakHeight3,PeakArea1,PeakArea2,PeakArea3\n");
    for (PepIonID pepion : PepIonList.values()) {
        writer.write(pepion.Index + "," + pepion.Sequence + "," + pepion.ModSequence + "," + pepion.TPPModSeq + "," + (pepion.Is_NonDegenerate ? 1 : 0) + "," + pepion.Charge + "," + pepion.NeutralPrecursorMz() + "," + pepion.GetIDRT() + "," + pepion.PeakRT + "," + pepion.GetSpectralCount() + "," + pepion.GetMS1ClusIndex() + "," + pepion.GetMS2ClusIndex() + "," + pepion.PeakClusterScore + "," + pepion.PeakHeight[0] + "," + pepion.PeakHeight[1] + "," + pepion.PeakHeight[2] + "," + pepion.PeakArea[0] + "," + pepion.PeakArea[1] + "," + pepion.PeakArea[2] + "\n");
    }
    writer.close();
}
开发者ID:YcheCourseProject，项目名称:DIA-Umpire-Maven，代码行数:14，代码来源:LCMSID.java

示例10: LibraryMatchWriteJS

import org.apache.commons.io.FilenameUtils; //导入方法依赖的package包/类
public boolean LibraryMatchWriteJS() throws FileNotFoundException {
    try {
        Logger.getRootLogger().info("Writing Target match results to file:" + FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + "_" + LibID + "_LibMatch.ser...");
        FileOutputStream fout2 = new FileOutputStream(FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + "_" + LibID + "_LibMatch.ser", false);
        ObjectOutputStream oos = new ObjectOutputStream(fout2);
        oos.writeObject(this);
        oos.close();
        fout2.close();
    } catch (Exception ex) {
        Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
        return false;
    }
    return true;
}
开发者ID:YcheCourseProject，项目名称:DIA-Umpire-Maven，代码行数:15，代码来源:TargetMatchScoring.java

示例11: LibraryMatchWrite

import org.apache.commons.io.FilenameUtils; //导入方法依赖的package包/类
public boolean LibraryMatchWrite() throws FileNotFoundException {
    try {
        Logger.getRootLogger().info("Writing Target match results to file:" + FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + "_" + LibID + "_LibMatch.serFS...");
        FileOutputStream fout = new FileOutputStream(FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + "_" + LibID + "_LibMatch.serFS", false);
        FSTObjectOutput out = new FSTObjectOutput(fout);
        out.writeObject(this);
        out.close();
        fout.close();
    } catch (Exception ex) {
        Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
        return false;
    }
    return true;
}
开发者ID:YcheCourseProject，项目名称:DIA-Umpire-Maven，代码行数:15，代码来源:TargetMatchScoring.java

示例12: ExportMappedPepIonCSV

import org.apache.commons.io.FilenameUtils; //导入方法依赖的package包/类
private void ExportMappedPepIonCSV() throws IOException {
    Logger.getRootLogger().info("Writing MappedPepIonIDs result to file:" + FilenameUtils.getFullPath(mzXMLFileName) + FilenameUtils.getBaseName(mzXMLFileName) + "_MappedPepIonIDs.csv...");
    FileWriter writer = new FileWriter(FilenameUtils.getFullPath(mzXMLFileName) + FilenameUtils.getBaseName(mzXMLFileName) + "_MappedPepIonIDs.csv");
    writer.write("PepIndex,Sequence,ModSeq,TPPModSeq,ModInfo,Charge,mz,PredictRT, PeakRT,MS1ClusIndex,MS2ClusIndex,PeakScore,PeakHeight1,PeakHeight2,PeakHeight3,PeakArea1,PeakArea2,PeakArea3,MS1AlignmentProb,MS1AlignmentLProb,MS2AlignmentProb,MS2AlignmentLProb\n");
    int index = 1;
    for (PepIonID pepion : MappedPepIonList.values()) {
        writer.write((index++) + "," + pepion.Sequence + "," + pepion.ModSequence + "," + pepion.TPPModSeq + "," + pepion.GetModificationString() + "," + pepion.Charge + "," + pepion.NeutralPrecursorMz() + "," + pepion.PredictRTString() + "," + pepion.PeakRT + "," + pepion.GetMS1ClusIndex() + "," + pepion.GetMS2ClusIndex() + "," + pepion.PeakClusterScore + "," + pepion.PeakHeight[0] + "," + pepion.PeakHeight[1] + "," + pepion.PeakHeight[2] + "," + pepion.PeakArea[0] + "," + pepion.PeakArea[1] + "," + pepion.PeakArea[2] + "," + pepion.MS1AlignmentProbability + "," + pepion.UScoreProbability_MS1 + "," + pepion.MS2AlignmentProbability + "," + pepion.UScoreProbability_MS2 + "\n");
    }
    writer.close();
}
开发者ID:YcheCourseProject，项目名称:DIA-Umpire-Maven，代码行数:11，代码来源:LCMSID.java

示例13: FasterSerialzationWrite

import org.apache.commons.io.FilenameUtils; //导入方法依赖的package包/类
public boolean FasterSerialzationWrite(String Filename) throws FileNotFoundException {
    try {
        org.apache.log4j.Logger.getRootLogger().info("Writing fasta serialization to file:" + FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + ".FastaSer...");
        FileOutputStream fout = new FileOutputStream(FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + ".FastaSer", false);
        FSTObjectOutput out = new FSTObjectOutput(fout);
        out.writeObject(this);
        out.close();
        fout.close();
    } catch (Exception ex) {
        org.apache.log4j.Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
        return false;
    }
    return true;
}
开发者ID:YcheCourseProject，项目名称:DIA-Umpire-Maven，代码行数:15，代码来源:FastaParser.java

示例14: FindPSMRT

import org.apache.commons.io.FilenameUtils; //导入方法依赖的package包/类
private void FindPSMRT() {
    try {
        if (!new File(FilenameUtils.getFullPath(Filename) + GetQ1Name() + ".mzXML").exists()) {
            Logger.getRootLogger().warn(FilenameUtils.getFullPath(Filename) + GetQ1Name() + ".mzXML doesn't exsit.");
            return;
        }
        if (!new File(FilenameUtils.getFullPath(Filename) + GetQ2Name() + ".mzXML").exists()) {
            Logger.getRootLogger().warn(FilenameUtils.getFullPath(Filename) + GetQ2Name() + ".mzXML doesn't exsit.");
            return;
        }
        if (!new File(FilenameUtils.getFullPath(Filename) + GetQ3Name() + ".mzXML").exists()) {
            Logger.getRootLogger().warn(FilenameUtils.getFullPath(Filename) + GetQ3Name() + ".mzXML doesn't exsit.");
            return;
        }

        mzXMLParser mgfname1 = new mzXMLParser(FilenameUtils.getFullPath(Filename) + GetQ1Name() + ".mzXML", parameter, SpectralDataType.DataType.DDA, null, NoCPUs);
        mzXMLParser mgfname2 = new mzXMLParser(FilenameUtils.getFullPath(Filename) + GetQ2Name() + ".mzXML", parameter, SpectralDataType.DataType.DDA, null, NoCPUs);
        mzXMLParser mgfname3 = new mzXMLParser(FilenameUtils.getFullPath(Filename) + GetQ3Name() + ".mzXML", parameter, SpectralDataType.DataType.DDA, null, NoCPUs);
        HashMap<String, mzXMLParser> mgfs = new HashMap<>();
        mgfs.put(GetQ1Name(), mgfname1);
        mgfs.put(GetQ2Name(), mgfname2);
        mgfs.put(GetQ3Name(), mgfname3);
        for (PSM psm : IDsummary.PSMList.values()) {
            if (psm.RetentionTime == -1f) {
                psm.RetentionTime = mgfs.get(psm.GetRawNameString()).GetScanElutionTimeMap().get(psm.ScanNo);
                psm.NeighborMaxRetentionTime = psm.RetentionTime;
            }
        }
    } catch (Exception ex) {
        Logger.getRootLogger().warn("Exception trying to fill PSM RTs");
    }
}
开发者ID:YcheCourseProject，项目名称:DIA-Umpire-Maven，代码行数:33，代码来源:DIAPack.java

示例15: GetIPROPHETProtXML

import org.apache.commons.io.FilenameUtils; //导入方法依赖的package包/类
public String GetIPROPHETProtXML() {
    return FilenameUtils.getFullPath(ParentmzXMLName) + "interact-" + FilenameUtils.getBaseName(ParentmzXMLName) + ".iproph.prot.xml";
}
开发者ID:YcheCourseProject，项目名称:DIA-Umpire-Maven，代码行数:4，代码来源:LCMSPeakMS1.java


注：本文中的org.apache.commons.io.FilenameUtils.getFullPath方法示例由纯净天空整理自Github/MSDocs等开源代码及文档管理平台，相关代码片段筛选自各路编程大神贡献的开源项目，源码版权归原作者所有，传播和使用请参考对应项目的License；未经允许，请勿转载。