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Java ImagePlusAdapter.convertFloat方法代码示例

本文整理汇总了Java中net.imglib2.img.ImagePlusAdapter.convertFloat方法的典型用法代码示例。如果您正苦于以下问题：Java ImagePlusAdapter.convertFloat方法的具体用法？Java ImagePlusAdapter.convertFloat怎么用？Java ImagePlusAdapter.convertFloat使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类net.imglib2.img.ImagePlusAdapter的用法示例。


在下文中一共展示了ImagePlusAdapter.convertFloat方法的14个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Java代码示例。

示例1: main

import net.imglib2.img.ImagePlusAdapter; //导入方法依赖的package包/类
public static void main( String[] args )
	{
		String srcImgFn = "/groups/jain/home/bogovicj/learning/advanced-imglib2/images/bee-1.tif";
		Img<FloatType> img =  ImagePlusAdapter.convertFloat( IJ.openImage(srcImgFn) );
	
		int[] sz = new int[]{ (int)img.dimension(0), (int)img.dimension(1) };
		Img<FloatType> img2 = ImgOps.createGradientImgX( sz, new FloatType());			

		//imageStats( img );
		//imageTextureStats( img );
	
		// function that normalizes to range [0,1] 
//		Normalize<FloatType> nrmFun = new Normalize<FloatType>( 
//			0, 255, 0, 1);	
//		evalFun( img, nrmFun );

		// add the images
		RealAdd<FloatType,FloatType,FloatType> sumfun = new RealAdd<FloatType,FloatType,FloatType>();
		evalFun( img, img2, sumfun );

		System.out.println("finished");
		System.exit(0);
	}
开发者ID:bogovicj，项目名称:hhmi-exp，代码行数:24，代码来源:OpsExamples.java

示例2: tryMatchRegistration

import net.imglib2.img.ImagePlusAdapter; //导入方法依赖的package包/类
public static void tryMatchRegistration() 
	{
		String imgfn = "/data-ssd1/john/projects/crackSegmentation/crackVolDown_cp.tif";
		String maskfn = "/data-ssd1/john/projects/crackSegmentation/Labels_ds_interp_cp_smooth.tif";
		int[] patchSize = new int[] { 19, 19, 7 };
		
		Img<FloatType> img =  ImagePlusAdapter.convertFloat( IJ.openImage(imgfn) );
		Img<FloatType> mask = ImagePlusAdapter.convertFloat( IJ.openImage(maskfn) );

		CrackCorrection<FloatType> cc = new CrackCorrection<FloatType>(
				img, mask, patchSize);
		cc.computeEdgels();
		
		int i = cc.edgelIdxNearest(new double[]{67,290,13});
		int j = cc.edgelIdxNearest(new double[]{69,311,13});
		
		System.out.println(" i: " + i + "  " + cc.getEdgels().get(i));
		System.out.println(" j: " + j + "  " + cc.getEdgels().get(j));
	
		cc.debugOutDir = "/data-ssd1/john/projects/crackPatching/edgelRegPatch";
//		cc.registerEdgelsOrient( cc.getEdgels().get(i), cc.getEdgels().get(j), i);
		
	}
开发者ID:bogovicj，项目名称:hhmi-exp，代码行数:24，代码来源:EdgelMatchingExps.java

示例3: testClusteringReal

import net.imglib2.img.ImagePlusAdapter; //导入方法依赖的package包/类
public static void testClusteringReal(){
//		String destDir = "/Users/bogovicj/Documents/projects/crackStitching/edgeClustering";
		String destDir = "/groups/saalfeld/home/bogovicj/projects/crackStitching/edgeClustering/closeup";
		
		// load a volume
		int downSampleFactor = 4;
		String imgfn = "/data-ssd1/john/projects/crackSegmentation/groundTruth/closeup/img_ds"+downSampleFactor+".tif";
		String maskfn = "/data-ssd1/john/projects/crackSegmentation/groundTruth/closeup/labels_interp_smooth_ds"+downSampleFactor+".tif";
		Img<FloatType> img =  ImagePlusAdapter.convertFloat( IJ.openImage(imgfn) );
		Img<FloatType> mask = ImagePlusAdapter.convertFloat( IJ.openImage(maskfn) );
		
		// cluster edgels
		int[] patchSize = new int[]{ 9,9 };
		CrackCorrection<FloatType> cc = new CrackCorrection<FloatType>( img, mask, patchSize);
		cc.computeEdgels();
		
		System.out.println(" num edgels - " + cc.getEdgels().size());
		
		EdgelMatching<FloatType> em = new EdgelMatching<FloatType>();
		em.setSearchType( EdgelMatching.SearchTypes.COUNT );
		em.setEdgelSearchCount(27);
		em.setEdgels( cc.getEdgels() );

//		EdgelClustering<FloatType> ec = new EdgelClustering<FloatType>( em );
		EdgelClusteringRansac<FloatType> ec = new EdgelClusteringRansac<FloatType>( em );
		ec.cluster();
		
		Img<FloatType> clusterImg = img.factory().create( img, img.firstElement() );
		ec.makeEdgelClusterImgMem(clusterImg);
		ImgOps.writeFloat( clusterImg, destDir + File.separator + "edgelClusterImg.tif");
		
	}
开发者ID:bogovicj，项目名称:hhmi-exp，代码行数:33，代码来源:EdgelClusteringTests.java

示例4: test2

import net.imglib2.img.ImagePlusAdapter; //导入方法依赖的package包/类
public static void test2(){
	String imfn = "/groups/saalfeld/home/bogovicj/tests/testdat/boats.tif";
	Img<FloatType> img =  ImagePlusAdapter.convertFloat( IJ.openImage(imfn) );
	double[] sigmas = new double[]{ 0, 0 };
	double[] dsFactors = new double[]{ 1, 1 };
	
	Img<FloatType> out = Resampling.resampleGaussian(
			img, 
			img.factory(), 
			dsFactors, sigmas, sigmas);
	
	ImgOps.writeFloat( out,  "/groups/saalfeld/home/bogovicj/tests/testdat/boats_myds_1-1.tif");
}
开发者ID:bogovicj，项目名称:hhmi-exp，代码行数:14，代码来源:ResamplingTests.java

示例5: main

import net.imglib2.img.ImagePlusAdapter; //导入方法依赖的package包/类
public static void main(String[] args) {
		
		int downSampleFactor = 4;
//		double searchRadius = 100;
		int    searchCount  = 60;
		
		String imgfn = "/data-ssd1/john/projects/crackSegmentation/groundTruth/closeup/img_ds"+downSampleFactor+".tif";
		String maskfn = "/data-ssd1/john/projects/crackSegmentation/groundTruth/closeup/labels_interp_smooth_ds"+downSampleFactor+".tif";
		Img<FloatType> img =  ImagePlusAdapter.convertFloat( IJ.openImage(imgfn) );
		Img<FloatType> mask = ImagePlusAdapter.convertFloat( IJ.openImage(maskfn) );
		
//		int[] patchSize = new int[] { 45, 45, 19 };
		int[] patchSize = new int[] { 31, 31, 19 };
//		int[] patchSize = new int[] { 15, 15, 13 };
		
		CrackCorrection<FloatType> cc = new CrackCorrection<FloatType>(
				img, mask, patchSize);
		
		EdgelMatching<FloatType> em = new EdgelMatching<FloatType>(img, mask, patchSize);
		em.debugDir = "/data-ssd1/john/projects/crackPatching/cropEdgelMatch";
		em.debugSuffix = "ds"+downSampleFactor;
		
		em.setSearchType( EdgelMatching.SearchTypes.COUNT );
		em.setEdgelSearchCount( searchCount );
		
//		em.setEdgelSearchRadius( searchRadius / (downSampleFactor) );
		
		cc.edgelMatcher = em;
		
		cc.computeEdgels();
		cc.edgelMatcher.setEdgels(cc.getEdgels());
		
		EdgelClusteringRansac<FloatType> ec = new EdgelClusteringRansac<FloatType>(
			cc.edgelMatcher);
		
		ec.cluster( );
		
		Img<FloatType> clusterImg = img.factory().create( img, img.firstElement());
//		ec.makeEdgelClusterImg( clusterImg );
		ec.makeEdgelClusterImgMem( clusterImg );
		
		Format formatter = new SimpleDateFormat("yyyyMMdd-HHmmss");
		String dtstr = formatter.format(Calendar.getInstance().getTime());
		String fn = String.format("/groups/saalfeld/home/bogovicj/tmp/edgelClustersMemRansac_%s.tif", dtstr);
		logger.info("fn: " + fn);
		ImgOps.writeFloat( clusterImg, fn);
		
		
		logger.info("finished");
		System.exit(0);
	}
开发者ID:bogovicj，项目名称:hhmi-exp，代码行数:52，代码来源:EdgelClusteringRansac.java

示例6: main

import net.imglib2.img.ImagePlusAdapter; //导入方法依赖的package包/类
public static void main(String[] args) {
		
		int downSampleFactor = 4;
//		double searchRadius = 100;
		int    searchCount  = 60;
		
		String imgfn = "/data-ssd1/john/projects/crackSegmentation/groundTruth/closeup/img_ds"+downSampleFactor+".tif";
		String maskfn = "/data-ssd1/john/projects/crackSegmentation/groundTruth/closeup/labels_interp_smooth_ds"+downSampleFactor+".tif";
		Img<FloatType> img =  ImagePlusAdapter.convertFloat( IJ.openImage(imgfn) );
		Img<FloatType> mask = ImagePlusAdapter.convertFloat( IJ.openImage(maskfn) );
		
//		int[] patchSize = new int[] { 45, 45, 19 };
		int[] patchSize = new int[] { 31, 31, 19 };
//		int[] patchSize = new int[] { 15, 15, 13 };
		
		CrackCorrection<FloatType> cc = new CrackCorrection<FloatType>(
				img, mask, patchSize);
		
		EdgelMatching<FloatType> em = new EdgelMatching<FloatType>(img, mask, patchSize);
		em.debugDir = "/data-ssd1/john/projects/crackPatching/cropEdgelMatch";
		em.debugSuffix = "ds"+downSampleFactor;
		
		em.setSearchType( EdgelMatching.SearchTypes.COUNT );
		em.setEdgelSearchCount( searchCount );
		
//		em.setEdgelSearchRadius( searchRadius / (downSampleFactor) );
		
		cc.edgelMatcher = em;
		
		cc.computeEdgels();
		cc.edgelMatcher.setEdgels(cc.getEdgels());
		
		EdgelClustering<FloatType> ec = 
				new EdgelClustering<FloatType>(
						cc.edgelMatcher);
		
		ec.cluster( );
		Img<FloatType> clusterImg = img.factory().create( img, img.firstElement());
//		ec.makeEdgelClusterImg( clusterImg );
		ec.makeEdgelClusterImgMem( clusterImg );
		
		Format formatter = new SimpleDateFormat("yyyyMMdd-HHmmss");
		String dtstr = formatter.format(Calendar.getInstance().getTime());
		String fn = String.format("/groups/saalfeld/home/bogovicj/tmp/edgelClustersMem_%s.tif", dtstr);
		logger.info("fn: " + fn);
		ImgOps.writeFloat( clusterImg, fn);
		
		
		/* CHECK CONFLICT CONDITION METHOD */
//		System.out.println( "A A S :"  + isConflict( CLASSA, CLASSA, true));
//		System.out.println( "A B S :"  + isConflict( CLASSA, CLASSB, true));
//		System.out.println( "A A D :"  + isConflict( CLASSA, CLASSA, false));
//		System.out.println( "A B D :"  + isConflict( CLASSA, CLASSB, false));
		
		
		logger.info("finished");
		System.exit(0);
	}
开发者ID:bogovicj，项目名称:hhmi-exp，代码行数:59，代码来源:EdgelClustering.java

示例7: checkImport

import net.imglib2.img.ImagePlusAdapter; //导入方法依赖的package包/类
public static void checkImport(){
		
		String maskfn = "/groups/jain/home/bogovicj/projects/crackSegmentation/Labels_ds_interp_cp_smooth.tif";
		
		
		Img<FloatType> mask = ImagePlusAdapter.convertFloat( IJ.openImage(maskfn) );
		
		
//		ArrayList<Integer> set = ImgUtil.uniqueInt(mask);
//		Collections.sort(set);
//		System.out.println("set: " + set);
		
		
//		RandomAccess<UnsignedByteType> ra = mask.randomAccess();
		RandomAccess<FloatType> ra = mask.randomAccess();
		
		ra.setPosition(new int[]{207,137,9});
		
		System.out.println("val: " + ra.get());
		
	}
开发者ID:bogovicj，项目名称:hhmi-exp，代码行数:22，代码来源:EdgelOrientationVisValid.java

示例8: edgelFeatures

import net.imglib2.img.ImagePlusAdapter; //导入方法依赖的package包/类
public static void edgelFeatures()
	{
		int downSampleFactor = 4;
		double searchRadius = 100;
//		double searchRadius = 50;
		
		String imgfn = "/data-ssd1/john/projects/crackSegmentation/groundTruth/closeup/img_ds"+downSampleFactor+".tif";
		String maskfn = "/data-ssd1/john/projects/crackSegmentation/groundTruth/closeup/labels_interp_smooth_ds"+downSampleFactor+".tif";
		
//		String featurefn = "/data-ssd1/john/projects/crackPatching/closeup/ds_4_patch_31-31-19/edgelFeatures.csv";
//		int[] patchSize = new int[] { 31, 31, 19 };
		
		String featurefn = "/data-ssd1/john/projects/crackPatching/closeup/ds_4_patch_15-15-9/edgelFeatures.csv";
		int[] patchSize = new int[] { 15, 15, 9 };
		
		double[] testPt = new double[]{ 159,253,73 }; 
		double[] resPt  = new double[]{ 170, 312, 136 };
		
		
		ArrayUtil.divide(testPt, downSampleFactor);
		ArrayUtil.divide(resPt, downSampleFactor);
		
		double[] diff   = ArrayUtil.clone(resPt);
		ArrayUtil.subtractInPlace(diff, testPt);
		double dist = Math.sqrt(ArrayUtil.sumSquares(diff));
		System.out.println( " dist " + dist);
		
		ArrayUtil.divide( testPt, (double)downSampleFactor);
		System.out.println( "testPt: " +  ArrayUtil.printArray(testPt));
		
		Img<FloatType> img =  ImagePlusAdapter.convertFloat( IJ.openImage(imgfn) );
		Img<FloatType> mask = ImagePlusAdapter.convertFloat( IJ.openImage(maskfn) );

		CrackCorrection<FloatType> cc = new CrackCorrection<FloatType>(
				img, mask, patchSize);
		
		cc.computeEdgels();
		
		
		EdgelMatching<FloatType> em = new EdgelMatching<FloatType>(img, mask, patchSize);
		em.debugDir = "/data-ssd1/john/projects/crackPatching/cropEdgelMatch";
		em.debugSuffix = "ds"+downSampleFactor;
//		em.debugSuffix = "";
		
//		em.setSearchType( EdgelMatching.SearchTypes.COUNT );
//		em.setEdgelSearchCount(3000);
		
		em.setEdgelSearchRadius( searchRadius / (downSampleFactor) );
		em.setEdgels(cc.getEdgels());
		
		try {
			em.computeAndWriteEdgelsAndFeatures(featurefn);
		} catch (IOException e) {
			e.printStackTrace();
		}
		
	}
开发者ID:bogovicj，项目名称:hhmi-exp，代码行数:58，代码来源:EdgelMatchingExps.java

示例9: tryMatching

import net.imglib2.img.ImagePlusAdapter; //导入方法依赖的package包/类
public static void tryMatching() 
	{
//		String imgfn = "/data-ssd1/john/projects/crackSegmentation/crackVolDown_cp.tif";
//		String maskfn = "/data-ssd1/john/projects/crackSegmentation/Labels_ds_interp_cp_smooth.tif";
		
		int downSampleFactor = 4;
		double searchRadius = 100;
//		double searchRadius = 50;
		
//		String imgfn = "/data-ssd1/john/projects/crackSegmentation/groundTruth/closeup/img.tif";
//		String maskfn = "/data-ssd1/john/projects/crackSegmentation/groundTruth/closeup/labels_interp_smooth.tif";
		
		String imgfn = "/data-ssd1/john/projects/crackSegmentation/groundTruth/closeup/img_ds"+downSampleFactor+".tif";
		String maskfn = "/data-ssd1/john/projects/crackSegmentation/groundTruth/closeup/labels_interp_smooth_ds"+downSampleFactor+".tif";
		int[] patchSize = new int[] { 31, 31, 21 };
		
		double[] testPt = new double[]{ 159,253,73 }; 
		double[] resPt  = new double[]{ 170, 312, 136 };
		
		
		ArrayUtil.divide(testPt, downSampleFactor);
		ArrayUtil.divide(resPt, downSampleFactor);
		
		double[] diff   = ArrayUtil.clone(resPt);
		ArrayUtil.subtractInPlace(diff, testPt);
		double dist = Math.sqrt(ArrayUtil.sumSquares(diff));
		System.out.println( " dist " + dist);
		
		ArrayUtil.divide( testPt, (double)downSampleFactor);
		System.out.println( "testPt: " +  ArrayUtil.printArray(testPt));
		
		Img<FloatType> img =  ImagePlusAdapter.convertFloat( IJ.openImage(imgfn) );
		Img<FloatType> mask = ImagePlusAdapter.convertFloat( IJ.openImage(maskfn) );

		CrackCorrection<FloatType> cc = new CrackCorrection<FloatType>(
				img, mask, patchSize);
		
		cc.computeEdgels();
		
//		cc.edgelIdxImg();
		
//		ArrayList<Edgel> edgels = cc.getEdgels();
//		int i =0;
//		for ( Edgel e : edgels ){
//			System.out.println( ArrayUtil.printArray( e.getPosition() ));
//			
//			if(i>50) break;
//		}
		

		
		EdgelMatching<FloatType> em = new EdgelMatching<FloatType>(img, mask, patchSize);
		em.debugDir = "/data-ssd1/john/projects/crackPatching/cropEdgelMatch";
		em.debugSuffix = "ds"+downSampleFactor;
//		em.debugSuffix = "";
		
//		em.setSearchType( EdgelMatching.SearchTypes.COUNT );
//		em.setEdgelSearchCount(3000);
		
		em.setEdgelSearchRadius( searchRadius / (downSampleFactor) );
		
		em.setEdgels(cc.getEdgels());
		
//		em.computeAllAffinities();
//		em.testAffinitiesReg();
		
		
		int testEdgelIdx = cc.edgelIdxNearest(testPt);
		em.debug_i  = testEdgelIdx;
		
		Edgel testEdgel = cc.getEdgels().get(testEdgelIdx);
		em.computeAffinities( testEdgel );
		
	}
开发者ID:bogovicj，项目名称:hhmi-exp，代码行数:75，代码来源:EdgelMatchingExps.java

示例10: edgelTypeValidate

import net.imglib2.img.ImagePlusAdapter; //导入方法依赖的package包/类
public static void edgelTypeValidate() {
		
		String maskfn = "/data-ssd1/john/projects/crackSegmentation/Labels_ds_interp_cp_smooth.tif";

		
		ArrayImgFactory<FloatType> ffactory = new ArrayImgFactory<FloatType>();
		ArrayImgFactory<DoubleType> dfactory = new ArrayImgFactory<DoubleType>();
		
		Img<FloatType> mask = ImagePlusAdapter.convertFloat( IJ.openImage(maskfn) );
	
		float thresh = 40.0f;
		
		ArrayList<Edgel> 		edgels  = SubpixelEdgelDetection.getEdgels(mask, ffactory, thresh);
//		ArrayList<EdgelFloat> 	edgelsf = SubpixelEdgelDetectionFloat.getEdgels(mask, ffactory, thresh);
		
		System.out.println(" edgels size:       " + edgels.size());
//		System.out.println(" edgels float size: " + edgelsf.size());
		
		for(int i=0; i<20; i++){
			System.out.println("d " + edgels.get(i) );
//			System.out.println("f " + edgelsf.get(i) );
			System.out.println(" ");
		}
		
	}
开发者ID:bogovicj，项目名称:hhmi-exp，代码行数:26，代码来源:EdgelMatchingExps.java

示例11: testEdgelView

import net.imglib2.img.ImagePlusAdapter; //导入方法依赖的package包/类
public static void testEdgelView(){
	int downSampleFactor = 2;
	
	String imgfn = "/data-ssd1/john/projects/crackSegmentation/groundTruth/closeup/img_ds"+downSampleFactor+".tif";
	String maskfn = "/data-ssd1/john/projects/crackSegmentation/groundTruth/closeup/labels_interp_smooth_ds"+downSampleFactor+".tif";
	Img<FloatType> img =  ImagePlusAdapter.convertFloat( IJ.openImage(imgfn) );
	Img<FloatType> mask = ImagePlusAdapter.convertFloat( IJ.openImage(maskfn) );
	
	Edgel e = new Edgel( new double[]{87.07,103.04,204.02},
						 new double[]{0.83,0.52,0.20}, 72.03 );
	
	int[] patchSize = new int[]{43,43,19};
	RealTransformRandomAccessible<FloatType, InverseRealTransform> view = EdgelTools.edgelToView(e, mask, patchSize);
	
	Img<FloatType> imgOut = img.factory().create(patchSize, img.firstElement());
	
	ImgOps.copyInto( view, imgOut );
	
	ImgOps.writeFloat(imgOut, "/groups/jain/home/bogovicj/tmp/edgelView.tif");
	
}
开发者ID:bogovicj，项目名称:hhmi-exp，代码行数:22，代码来源:EdgelTools.java

示例12: checkEdgelPosition

import net.imglib2.img.ImagePlusAdapter; //导入方法依赖的package包/类
public static void checkEdgelPosition() 
	{
		
		String imgfn = "/groups/jain/home/bogovicj/projects/crackSegmentation/crackVolDown_cp.tif";
		
//		String maskfn = "/groups/jain/home/bogovicj/projects/crackSegmentation/Labels_ds_interp_cp.tif";
		String maskfn = "/groups/jain/home/bogovicj/projects/crackSegmentation/Labels_ds_interp_cp_smooth.tif";

		String edgelMaskPrefix = "/groups/jain/home/bogovicj/projects/crackSegmentation/edgelValidate/edgelMask_1";

		
		int[] patchSize = new int[]{7,7,3};
		int[] patchMidPt = PatchTools.patchSizeToMidpt(patchSize);
		
		
		Img<FloatType> img = ImagePlusAdapter.convertFloat( IJ.openImage(imgfn) );
//		Img<UnsignedByteType> mask = null;
		Img<FloatType> mask = ImagePlusAdapter.convertFloat( IJ.openImage(maskfn) );


		CrackCorrection<FloatType> cc = new CrackCorrection<FloatType>(
				img, mask, patchSize);
		
		cc.computeEdgels();
		ArrayList<Edgel> edgels = cc.getEdgels();
		
		double[] pos = new double[]{206,137,9};
		int i = cc.edgelIdxNearest(pos);
		
		Edgel edgel = edgels.get(i);
		
		logger.info(" " + edgel);
		
		
		
	}
开发者ID:bogovicj，项目名称:hhmi-exp，代码行数:37，代码来源:EdgelOrientationVisValid.java

示例13: checkEdgelType

import net.imglib2.img.ImagePlusAdapter; //导入方法依赖的package包/类
public static void checkEdgelType() 
	{
		
		String imgfn = "/groups/jain/home/bogovicj/projects/crackSegmentation/crackVolDown_cp.tif";
		
//		String maskfn = "/groups/jain/home/bogovicj/projects/crackSegmentation/Labels_ds_interp_cp.tif";
		String maskfn = "/groups/jain/home/bogovicj/projects/crackSegmentation/Labels_ds_interp_cp_smooth.tif";

		String edgelMaskPrefix = "/groups/jain/home/bogovicj/projects/crackSegmentation/edgelValidate/edgelMask_1";
		String crackMaskRewriteFn = "/groups/jain/home/bogovicj/projects/crackSegmentation/edgelValidate/crackMaskOut.tif";

		ArrayImgFactory<UnsignedByteType> ubfactory = new ArrayImgFactory<UnsignedByteType>();
		ArrayImgFactory<IntType> ifactory = new ArrayImgFactory<IntType>();
		ArrayImgFactory<FloatType> ffactory = new ArrayImgFactory<FloatType>();
		
		int[] patchSize = new int[]{7,7,3};
		int[] patchMidPt = PatchTools.patchSizeToMidpt(patchSize);
		
		
//		Img<UnsignedByteType> mask = null;
		Img<FloatType> mask = ImagePlusAdapter.convertFloat( IJ.openImage(maskfn) );

		ArrayList<Edgel> edgels = SubpixelEdgelDetection.getEdgels(mask, mask.factory(), 10.0f);
		logger.info("num edgels " + edgels.size());
		
		
		double[] pos = new double[]{206,137,9};

		
		ImgOps.write(mask, crackMaskRewriteFn);
		CrackCorrection cc = new CrackCorrection();
		cc.setEdgels(edgels);
		
		int i = cc.edgelIdxNearest(pos);
		
		Edgel edgel = edgels.get(i);
		logger.info(" " + edgel );	
		
	}
开发者ID:bogovicj，项目名称:hhmi-exp，代码行数:40，代码来源:EdgelOrientationVisValid.java

示例14: main

import net.imglib2.img.ImagePlusAdapter; //导入方法依赖的package包/类
public static void main(String[] args) {
		
		int downSampleFactor = 4;
		double searchRadius = 100;
		int    searchCount  = 2000;
		
		String imgfn = "/data-ssd1/john/projects/crackSegmentation/groundTruth/closeup/img_ds"+downSampleFactor+".tif";
		String maskfn = "/data-ssd1/john/projects/crackSegmentation/groundTruth/closeup/labels_interp_smooth_ds"+downSampleFactor+".tif";
		Img<FloatType> img =  ImagePlusAdapter.convertFloat( IJ.openImage(imgfn) );
		Img<FloatType> mask = ImagePlusAdapter.convertFloat( IJ.openImage(maskfn) );
		
//		int[] patchSize = new int[] { 45, 45, 19 };
		int[] patchSize = new int[] { 31, 31, 19 };
//		int[] patchSize = new int[] { 15, 15, 13 };
		
		CrackCorrection<FloatType> cc = new CrackCorrection<FloatType>(
				img, mask, patchSize);
		
		EdgelMatching<FloatType> em = new EdgelMatching<FloatType>(img, mask, patchSize);
		em.debugDir = "/data-ssd1/john/projects/crackPatching/cropEdgelMatch";
		em.debugSuffix = "ds"+downSampleFactor;
		
		cc.edgelMatcher = em;
		
		cc.edgelMatcher.setEdgelSearchRadius( searchRadius / (downSampleFactor) );
		
//		cc.edgelMatcher.setSearchType( EdgelMatching.SearchTypes.COUNT );
//		cc.edgelMatcher.setEdgelSearchCount( searchCount );
		
		cc.computeEdgels();
		cc.edgelMatcher.setEdgels(cc.getEdgels());
		
//		makeLapEdgeImg( cc, downSampleFactor );
		
		testEdgelMatchesWrite( cc, downSampleFactor );
		
//		edgelPatchWrite( cc, downSampleFactor );
		
//		edgelFeatures();
		
//		tryMatching();
		
//		tryMatchRegistration();
		
//		stupdidRadiusSearchTest();
//		
//		edgelTypeValidate();
		
		System.out.println("execution finished");
		System.exit(0);
		
	}
开发者ID:bogovicj，项目名称:hhmi-exp，代码行数:53，代码来源:EdgelMatchingExps.java


注：本文中的net.imglib2.img.ImagePlusAdapter.convertFloat方法示例由纯净天空整理自Github/MSDocs等开源代码及文档管理平台，相关代码片段筛选自各路编程大神贡献的开源项目，源码版权归原作者所有，传播和使用请参考对应项目的License；未经允许，请勿转载。