本文整理汇总了Java中htsjdk.samtools.SAMUtils.compareMapqs方法的典型用法代码示例。如果您正苦于以下问题：Java SAMUtils.compareMapqs方法的具体用法？Java SAMUtils.compareMapqs怎么用？Java SAMUtils.compareMapqs使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类htsjdk.samtools.SAMUtils的用法示例。
在下文中一共展示了SAMUtils.compareMapqs方法的3个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Java代码示例。
示例1: compare
import htsjdk.samtools.SAMUtils; //导入方法依赖的package包/类
public int compare(final SAMRecord rec1, final SAMRecord rec2) {
if (rec1.getReadUnmappedFlag()) {
if (rec2.getReadUnmappedFlag()) return 0;
else return 1;
} else if (rec2.getReadUnmappedFlag()) {
return -1;
}
return -SAMUtils.compareMapqs(rec1.getMappingQuality(), rec2.getMappingQuality());
}
示例2: considerBest
import htsjdk.samtools.SAMUtils; //导入方法依赖的package包/类
public void considerBest(final SAMRecord rec) {
if (bestMapq == -1) {
bestMapq = rec.getMappingQuality();
bestAlignments.add(rec);
} else {
final int cmp = SAMUtils.compareMapqs(bestMapq, rec.getMappingQuality());
if (cmp < 0) {
bestMapq = rec.getMappingQuality();
bestAlignments.clear();
bestAlignments.add(rec);
} else if (cmp == 0) {
bestAlignments.add(rec);
}
}
}
示例3: compare
import htsjdk.samtools.SAMUtils; //导入方法依赖的package包/类
@Override
public int compare(final SAMRecord rec1, final SAMRecord rec2) {
if (rec1.getReadUnmappedFlag()) {
if (rec2.getReadUnmappedFlag()) return 0;
else return 1;
} else if (rec2.getReadUnmappedFlag()) {
return -1;
}
return -SAMUtils.compareMapqs(rec1.getMappingQuality(), rec2.getMappingQuality());
}