本文整理汇总了Java中dr.evolution.util.Taxa.contains方法的典型用法代码示例。如果您正苦于以下问题：Java Taxa.contains方法的具体用法？Java Taxa.contains怎么用？Java Taxa.contains使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类dr.evolution.util.Taxa的用法示例。
在下文中一共展示了Taxa.contains方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Java代码示例。
示例1: MetagenomeData
import dr.evolution.util.Taxa; //导入方法依赖的package包/类
public MetagenomeData(TaxonList taxa, Alignment alignment, LinkageConstraints constraints, boolean fixedReferenceTree)
{
this.alignment = alignment;
this.constraints = constraints;
this.fixedReferenceTree = fixedReferenceTree;
referenceTaxa = new Taxa(taxa.asList());
if(fixedReferenceTree == true && !(taxa instanceof Tree)){
throw new RuntimeException("Error, a tree must be provided in order to fix the topology of reference taxa");
}
reads = new Taxa();
List<Taxon> alltaxa = alignment.asList();
for(int i=0; i<alltaxa.size(); i++)
{
if(!referenceTaxa.contains(alltaxa.get(i)))
reads.addTaxon(alltaxa.get(i));
}
if(constraints==null){
this.constraints = new LinkageConstraints(new ArrayList<LinkedGroup>());
}
}