本文整理汇总了Java中com.google.api.services.genomics.model.Read.setReadGroupId方法的典型用法代码示例。如果您正苦于以下问题：Java Read.setReadGroupId方法的具体用法？Java Read.setReadGroupId怎么用？Java Read.setReadGroupId使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类com.google.api.services.genomics.model.Read的用法示例。
在下文中一共展示了Read.setReadGroupId方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Java代码示例。
示例1: basicGoogleGenomicsRead
import com.google.api.services.genomics.model.Read; //导入方法依赖的package包/类
/**
* Creates a basic mapped Google read with a mapped mate.
* @return GoogleGenomicsRead
*/
private static Read basicGoogleGenomicsRead() {
final Read read = ArtificialReadUtils.createArtificialGoogleGenomicsRead(
BASIC_READ_NAME,
BASIC_READ_CONTIG,
BASIC_READ_START,
BASIC_READ_BASES,
BASIC_READ_BASE_QUALITIES,
BASIC_READ_CIGAR
);
read.setReadGroupId(BASIC_READ_GROUP);
read.getAlignment().getPosition().setReverseStrand(false);
read.getAlignment().setMappingQuality(BASIC_READ_MAPPING_QUALITY);
read.setNextMatePosition(new Position());
read.getNextMatePosition().setReferenceName(BASIC_READ_MATE_CONTIG);
read.getNextMatePosition().setPosition((long) BASIC_READ_MATE_START - 1);
read.getNextMatePosition().setReverseStrand(false);
read.setNumberReads(2);
read.setReadNumber(0);
read.setProperPlacement(false);
Map<String, List<Object>> infoMap = new LinkedHashMap<>();
infoMap.put(SAMTag.PG.name(), Collections.singletonList(BASIC_PROGRAM));
read.setInfo(infoMap);
return read;
}
示例2: getAndSetReadGroupData
import com.google.api.services.genomics.model.Read; //导入方法依赖的package包/类
@DataProvider(name = "GetAndSetReadGroupData")
public Object[][] getAndSetReadGroupData() {
SAMRecord noRGSam = basicSAMRecord();
noRGSam.clearAttributes();
Read noRGGoogleRead = basicGoogleGenomicsRead();
noRGGoogleRead.setReadGroupId(null);
return new Object[][] {
{ basicReadBackedBySam(), BASIC_READ_GROUP },
{ basicReadBackedByGoogle(), BASIC_READ_GROUP },
{ new SAMRecordToGATKReadAdapter(noRGSam), null },
{ new GoogleGenomicsReadToGATKReadAdapter(noRGGoogleRead), null }
};
}