Java HDF5Factory.open方法代码示例

import ch.systemsx.cisd.hdf5.HDF5Factory; //导入方法依赖的package包/类
/**
 * Save a {@link RandomAccessibleInterval} of {@link UnsignedByteType} into an HDF5
 * uint8 dataset.
 *
 * @param source
 * @param file
 * @param dataset
 * @param cellDimensions
 */
static public void saveUnsignedByte(
		final RandomAccessibleInterval< UnsignedByteType > source,
		final File file,
		final String dataset,
		final int[] cellDimensions )
{
	final IHDF5Writer writer = HDF5Factory.open( file );
	saveUnsignedByte( source, writer, dataset, cellDimensions );
	writer.close();
}
 

import ch.systemsx.cisd.hdf5.HDF5Factory; //导入方法依赖的package包/类
/**
 * Save a {@link RandomAccessibleInterval} of {@link FloatType} into an HDF5
 * float32 dataset.
 *
 * @param source
 * @param file
 * @param dataset
 * @param cellDimensions
 */
static public void saveFloat(
		final RandomAccessibleInterval< FloatType > source,
		final File file,
		final String dataset,
		final int[] cellDimensions )
{
	final IHDF5Writer writer = HDF5Factory.open( file );
	saveFloat( source, writer, dataset, cellDimensions );
	writer.close();
}
 

import ch.systemsx.cisd.hdf5.HDF5Factory; //导入方法依赖的package包/类
/**
 * Save a {@link RandomAccessibleInterval} of {@link DoubleType} into an HDF5
 * float64 dataset.
 *
 * @param source
 * @param file
 * @param dataset
 * @param cellDimensions
 */
static public void saveDouble(
		final RandomAccessibleInterval< DoubleType > source,
		final File file,
		final String dataset,
		final int[] cellDimensions )
{
	final IHDF5Writer writer = HDF5Factory.open( file );
	saveDouble( source, writer, dataset, cellDimensions );
	writer.close();
}
 

import ch.systemsx.cisd.hdf5.HDF5Factory; //导入方法依赖的package包/类
/**
 * Save a {@link RandomAccessibleInterval} of {@link ShortType} into an HDF5
 * uint16 dataset.
 *
 * @param source
 * @param file
 * @param dataset
 * @param cellDimensions
 */
static public void saveUnsignedShort(
		final RandomAccessibleInterval< ShortType > source,
		final File file,
		final String dataset,
		final int[] cellDimensions )
{
	final IHDF5Writer writer = HDF5Factory.open( file );
	saveUnsignedShort( source, writer, dataset, cellDimensions );
	writer.close();
}
 

import ch.systemsx.cisd.hdf5.HDF5Factory; //导入方法依赖的package包/类
/**
 * Save a {@link RandomAccessibleInterval} of {@link LongType} into an HDF5
 * uint64 dataset.
 *
 * @param source
 * @param file
 * @param dataset
 * @param cellDimensions
 */
static public void saveUnsignedLong(
		final RandomAccessibleInterval< LongType > source,
		final File file,
		final String dataset,
		final int[] cellDimensions )
{
	final IHDF5Writer writer = HDF5Factory.open( file );
	saveUnsignedLong( source, writer, dataset, cellDimensions );
	writer.close();
}
 

import ch.systemsx.cisd.hdf5.HDF5Factory; //导入方法依赖的package包/类
/**
 * Save a {@link RandomAccessibleInterval} of {@link LongType} into an HDF5
 * int64 dataset.
 *
 * @param source
 * @param file
 * @param dataset
 * @param cellDimensions
 */
static public void saveLong(
		final RandomAccessibleInterval< LongType > source,
		final File file,
		final String dataset,
		final int[] cellDimensions )
{
	final IHDF5Writer writer = HDF5Factory.open( file );
	saveLong( source, writer, dataset, cellDimensions );
	writer.close();
}
 

import ch.systemsx.cisd.hdf5.HDF5Factory; //导入方法依赖的package包/类
/**
 * Save a long to long lookup table into an HDF5 uint64 dataset.
 *
 * @param lut
 * @param file
 * @param dataset
 * @param cellDimensions
 */
static public void saveLongLongLut(
		final TLongLongHashMap lut,
		final File file,
		final String dataset,
		final int blockSize )
{
	final IHDF5Writer writer = HDF5Factory.open( file );
	saveLongLongLut( lut, writer, dataset, blockSize );
	writer.close();
}
 

import ch.systemsx.cisd.hdf5.HDF5Factory; //导入方法依赖的package包/类
/**
 * Save a long collection into an HDF5 uint64 dataset.
 *
 * @param longs
 * @param file
 * @param dataset
 * @param cellDimensions
 */
static public void saveLongCollection(
		final TLongCollection longs,
		final File file,
		final String dataset,
		final int blockSize )
{
	final IHDF5Writer writer = HDF5Factory.open( file );
	saveLongCollection( longs, writer, dataset, blockSize );
	writer.close();
}
 

import ch.systemsx.cisd.hdf5.HDF5Factory; //导入方法依赖的package包/类
/**
 * Save a double array as a float64[] attribute of an HDF5 object.
 *
 * @param values
 * @param file
 * @param object
 * @param attribute
 */
static public void saveAttribute(
		final double[] values,
		final File file,
		final String object,
		final String attribute )
{
	final IHDF5Writer writer = HDF5Factory.open( file );
	saveAttribute( values, writer, object, attribute );
	writer.close();
}
 

import ch.systemsx.cisd.hdf5.HDF5Factory; //导入方法依赖的package包/类
/**
 * Save a long value as a uint64 attribute of an HDF5 object.
 *
 * @param value
 * @param file
 * @param object
 * @param attribute
 */
static public void saveUint64Attribute(
		final long value,
		final File file,
		final String object,
		final String attribute )
{
	final IHDF5Writer writer = HDF5Factory.open( file );
	saveUint64Attribute( value, writer, object, attribute );
	writer.close();
}
 

import ch.systemsx.cisd.hdf5.HDF5Factory; //导入方法依赖的package包/类
static public void saveFloatArrayAttribute(
		final float[] value,
		final File file,
		final String dataset,
		final String attribute)
{
	final IHDF5Writer writer = HDF5Factory.open( file );
	writer.float32().setArrayAttr(dataset, attribute, value);
	writer.close();
}
 

import ch.systemsx.cisd.hdf5.HDF5Factory; //导入方法依赖的package包/类
static public void saveDoubleArrayAttribute(
		final double[] value,
		final File file,
		final String dataset,
		final String attribute)
{
	final IHDF5Writer writer = HDF5Factory.open( file );
	writer.float64().setArrayAttr(dataset, attribute, value);
	writer.close();
}
 

import ch.systemsx.cisd.hdf5.HDF5Factory; //导入方法依赖的package包/类
public static void exportHdf5(SortedMap<Number, Number> data, String filePath) {

		writer = HDF5Factory.open(filePath);
		int size = data.keySet().size();
		double[][] dataArray = new double[2][size];

		int counter = 0;
		Iterator<Number> iter = data.keySet().iterator();
		while (iter.hasNext()) {
			Number x = iter.next();
			Number y = data.get(x);
			if (x instanceof Double) {
				dataArray[0][counter] = ((Double) x).doubleValue();
			} else if (x instanceof Long) {
				dataArray[0][counter] = ((Long) x).doubleValue();
			}

			if (y instanceof Double) {
				dataArray[1][counter] = ((Double) y).doubleValue();
			} else if (y instanceof Long) {
				dataArray[1][counter] = ((Long) y).doubleValue();
			}

			counter++;
		}
		writer.writeDoubleMatrix(DATA_ID, dataArray);
		writer.close();

	}