Java Distribution类代码示例

import org.gbif.api.model.checklistbank.Distribution; //导入依赖的package包/类
@Test
public void testEmptyModels() throws Exception {
    assertSerde(new NameUsage());
    assertSerde(new VerbatimNameUsage());
    assertSerde(new NameUsageMetrics());
    assertSerde(new UsageExtensions());
    assertSerde(new ParsedName());
    assertSerde(new Description());
    assertSerde(new Distribution());
    assertSerde(new Identifier());
    assertSerde(new NameUsageMediaObject());
    assertSerde(new Reference());
    assertSerde(new SpeciesProfile());
    assertSerde(new NameUsage());
    assertSerde(new TypeSpecimen());
    assertSerde(new VernacularName());
    assertSerde(new DatasetMetrics());
}
 

import org.gbif.api.model.checklistbank.Distribution; //导入依赖的package包/类
private void assertObject(Distribution obj, Distribution obj2, String source, Integer sourceTaxonKey) {
    assertEquals(obj.getAppendixCites(), obj2.getAppendixCites());
    assertEquals(obj.getCountry(), obj2.getCountry());
    assertEquals(obj.getEndDayOfYear(), obj2.getEndDayOfYear());
    assertEquals(obj.getEstablishmentMeans(), obj2.getEstablishmentMeans());
    assertEquals(obj.getLifeStage(), obj2.getLifeStage());
    assertEquals(obj.getLocality(), obj2.getLocality());
    assertEquals(obj.getLocationId(), obj2.getLocationId());
    assertEquals(obj.getRemarks(), obj2.getRemarks());
    assertEquals(obj.getStartDayOfYear(), obj2.getStartDayOfYear());
    assertEquals(obj.getStatus(), obj2.getStatus());
    assertEquals(obj.getTemporal(), obj2.getTemporal());
    assertEquals(obj.getThreatStatus(), obj2.getThreatStatus());

    assertEquals(source, obj2.getSource());
    assertEquals(sourceTaxonKey, obj2.getSourceTaxonKey());
}
 

import org.gbif.api.model.checklistbank.Distribution; //导入依赖的package包/类
/**
 * Utility method that iterates over all the {@link org.gbif.api.model.checklistbank.Distribution} objects of a {@link org.gbif.api.model.checklistbank.NameUsage}.
 *
 * @param doc to be modified by adding the distributions fields
 */
private static void addDistributionsAndThreatStatus(NameUsageAvro nameUsageAvro, UsageExtensions ext) {
  if (ext.distributions == null) {
    return;
  }
  List<Integer> threatStatusKeys = Lists.newArrayList();
  for (Distribution distribution : ext.distributions) {
    if (distribution.getThreatStatus() != null) {
      threatStatusKeys.add(distribution.getThreatStatus().ordinal());
    }
  }

  nameUsageAvro.setThreatStatusKey(threatStatusKeys);
}
 

import org.gbif.api.model.checklistbank.Distribution; //导入依赖的package包/类
@Test
public void testDistributionRange() throws Exception {
  int start = 100000040;
  int end   = 101000000;
  Map<Integer, List<Distribution>> range = distributionService.listRange(start, end);
  assertEquals(1, range.size());
  assertEquals(10, range.get(100000040).size());
}
 

import org.gbif.api.model.checklistbank.Distribution; //导入依赖的package包/类
private void interpretDistribution(NameUsage u, UsageExtensions e, VerbatimNameUsage v) {
  if (v.hasExtension(Extension.DISTRIBUTION)) {
    for (Map<Term, String> rec : v.getExtensions().get(Extension.DISTRIBUTION)) {
      Distribution d = new Distribution();
      // interpret rec
      d.setLocality(value(rec, DwcTerm.locality));
      d.setLocationId(value(rec, DwcTerm.locationID));
      d.setCountry(enumify(rec, NameUsageIssue.DISTRIBUTION_INVALID, countryParser, u, DwcTerm.country, DwcTerm.countryCode));
      // some location is required, otherwise its pointless
      if (d.getLocality() == null && d.getLocationId() == null && d.getCountry() == null) {
        u.addIssue(NameUsageIssue.DISTRIBUTION_INVALID);
        continue;
      }
      d.setStatus(enumify(rec, NameUsageIssue.DISTRIBUTION_INVALID, occurrenceStatusParser, u, DwcTerm.occurrenceStatus));
      d.setEstablishmentMeans(enumify(rec, NameUsageIssue.DISTRIBUTION_INVALID, establishmentMeansParser, u, DwcTerm.establishmentMeans));
      d.setAppendixCites(enumify(rec, NameUsageIssue.DISTRIBUTION_INVALID, citesAppendixParser, u, GbifTerm.appendixCITES));
      d.setThreatStatus(enumify(rec, NameUsageIssue.DISTRIBUTION_INVALID, threatStatusParser, u, IucnTerm.threatStatus));
      d.setLifeStage(enumify(rec, NameUsageIssue.DISTRIBUTION_INVALID, lifeStageParser, u, DwcTerm.lifeStage));
      d.setTemporal(value(rec, DwcTerm.eventDate, DcTerm.temporal));
      d.setEndDayOfYear(integer(rec, NameUsageIssue.DISTRIBUTION_INVALID, u, DwcTerm.endDayOfYear));
      d.setStartDayOfYear(integer(rec, NameUsageIssue.DISTRIBUTION_INVALID, u, DwcTerm.startDayOfYear));
      d.setRemarks(value(rec, DwcTerm.occurrenceRemarks, DwcTerm.taxonRemarks));
      d.setSource(value(rec, DcTerm.source));
      e.distributions.add(d);
    }
  }
}
 

import org.gbif.api.model.checklistbank.Distribution; //导入依赖的package包/类
@Test
public void testListByRange() {
    Map<Integer, List<Distribution>> map = ((DistributionServiceMyBatis) service).listRange(1, 100000020);
    assertEquals(1, map.size());

    List<Distribution> records = map.get(100000007);
    assertEquals(4, records.size());
    for (Distribution v : records) {
        assertNull(v.getSourceTaxonKey());
    }
}
 

import org.gbif.api.model.checklistbank.Distribution; //导入依赖的package包/类
@Override
public void handleResult(ResultContext<? extends Distribution> resultContext) {
  if (resultContext.getResultObject() != null) {
    counter++;
    Distribution d = resultContext.getResultObject();
    System.out.println(d);
    assertNotNull(d.getTaxonKey());
    assertNotNull(d.getLocality());
  }
}
 

import org.gbif.api.model.checklistbank.Distribution; //导入依赖的package包/类
@Test
public void testMapper() throws Exception {
    assertTrue(mapper.listByChecklistUsage(usageKey, new PagingRequest()).isEmpty());
    assertTrue(mapper.listByNubUsage(usageKey, new PagingRequest()).isEmpty());

    Distribution obj = new Distribution();
    obj.setAppendixCites(CitesAppendix.II);
    obj.setCountry(Country.ALGERIA);
    obj.setEndDayOfYear(1990);
    obj.setEstablishmentMeans(EstablishmentMeans.NATIVE);
    obj.setLifeStage(LifeStage.EMRYO);
    obj.setLocality("location location location");
    obj.setLocationId("locID");
    obj.setRemarks("remarks");
    obj.setStartDayOfYear(1989);
    obj.setStatus(OccurrenceStatus.COMMON);
    obj.setTemporal("aha");
    obj.setThreatStatus(ThreatStatus.CRITICALLY_ENDANGERED);
    // these should get ignored
    obj.setSource("sourcy s");
    obj.setSourceTaxonKey(123);

    mapper.insert(usageKey, obj, citationKey1);

    Distribution obj2 = mapper.listByChecklistUsage(usageKey, new PagingRequest()).get(0);
    assertObject(obj, obj2, citation1, null);


    obj2 = mapper.listByNubUsage(nubKey, new PagingRequest()).get(0);
    // these are now nub source usage values
    assertObject(obj, obj2, datasetTitle, usageKey);
}
 

import org.gbif.api.model.checklistbank.Distribution; //导入依赖的package包/类
@Inject
public DistributionWsClient(@ChecklistBankWs WebResource resource) {
  super(Distribution.class, new GenericType<PagingResponse<Distribution>>() {
  }, resource, Constants.DISTRIBUTIONS_PATH);
}
 

import org.gbif.api.model.checklistbank.Distribution; //导入依赖的package包/类
public DistributionWsClientTest() {
  super(Distribution.class);
}
 

import org.gbif.api.model.checklistbank.Distribution; //导入依赖的package包/类
@Override
NameUsageComponentBaseWsClient<Distribution> getClient(WebResource resource) {
  return new DistributionWsClient(resource);
}
 

import org.gbif.api.model.checklistbank.Distribution; //导入依赖的package包/类
@Override
Distribution getMockObject() {
  Distribution distribution = new Distribution();
  distribution.setThreatStatus(ThreatStatus.ENDANGERED);
  return distribution;
}
 

import org.gbif.api.model.checklistbank.Distribution; //导入依赖的package包/类
/**
 * Iterates over the assigned {@link org.gbif.api.model.checklistbank.NameUsage} objects to insert the corresponding {@link org.apache.solr.common.SolrInputDocument}
 * objects.
 *
 * @return the total number of documents added by this Thread.
 */
@Override
public Integer call() throws Exception {
  // Timing information initialization
  stopWatch.start();
  log.info("Adding usages from id {} to {}", startKey, endKey);
  int docCount = 0;
  // Get all usages
  List<NameUsage> usages = nameUsageService.listRange(startKey, endKey);
  // get all component maps into memory first
  Map<Integer, List<VernacularName>> vernacularNameMap = vernacularNameService.listRange(startKey, endKey);

  Map<Integer, List<Description>> descriptionMap = descriptionService.listRange(startKey, endKey);

  Map<Integer, List<Distribution>> distributionMap = distributionService.listRange(startKey, endKey);

  Map<Integer, List<SpeciesProfile>> speciesProfileMap = speciesProfileService.listRange(startKey, endKey);
  File file = new File(startKey+ "-" + endKey + ".avro");
  file.createNewFile();
  log.info("Creating file " + file.getAbsolutePath());
  ClassLoader classLoader = AvroExporter.class.getClassLoader();
  Schema schema = new Schema.Parser().parse(classLoader.getResource("solr.avrsc").openStream());
  DatumWriter<NameUsageAvro> datumWriter = new SpecificDatumWriter<>(NameUsageAvro.class);
  try(DataFileWriter<NameUsageAvro> dataFileWriter = new DataFileWriter<NameUsageAvro>(datumWriter)) {
    dataFileWriter.create(schema, file);

    // now we're ready to build the solr indices quicky!
    for (NameUsage usage : usages) {
      if (usage == null) {
        log.warn("Unexpected numm usage found in range {}-{}, docCount={}", startKey, endKey, docCount);
        continue;
      }
      try {
        UsageExtensions ext = new UsageExtensions();
        ext.speciesProfiles = speciesProfileMap.get(usage.getKey());
        ext.vernacularNames = vernacularNameMap.get(usage.getKey());
        ext.descriptions = descriptionMap.get(usage.getKey());
        ext.distributions = distributionMap.get(usage.getKey());

        List<Integer> parents = nameUsageService.listParents(usage.getKey());
        dataFileWriter.append(nameUsageAvroConverter.toObject(usage, parents, ext));

      } catch (Exception e) {
        log.error("Error exporting  usage {}  extension {} to avro", usage, e);
      }
      docCount++;
      NameUsageBatchProcessor.counter.incrementAndGet();
    }
  }

  moveToHdfs(file,nameNode);
  log.info(file.getName() + " moved to hdfs");
  // job finished notice
  stopWatch.stop();
  log.info("Finished indexing of usages in range {}-{}. Total time: {}",
    new Object[] {startKey, endKey, stopWatch.toString()});

  return docCount;
}
 

import org.gbif.api.model.checklistbank.Distribution; //导入依赖的package包/类
/**
 * Iterates over the assigned {@link NameUsage} objects to insert the corresponding {@link SolrInputDocument}
 * objects.
 *
 * @return the total number of documents added by this Thread.
 */
@Override
public Integer call() throws Exception {
  // Timing information initialization
  stopWatch.start();
  log.info("Adding usages from id {} to {}", startKey, endKey);
  int docCount = 0;
  // Get all usages
  List<NameUsage> usages = nameUsageService.listRange(startKey, endKey);
  // get all component maps into memory first
  Map<Integer, List<VernacularName>> vernacularNameMap = vernacularNameService.listRange(startKey, endKey);

  Map<Integer, List<Description>> descriptionMap = descriptionService.listRange(startKey, endKey);

  Map<Integer, List<Distribution>> distributionMap = distributionService.listRange(startKey, endKey);

  Map<Integer, List<SpeciesProfile>> speciesProfileMap = speciesProfileService.listRange(startKey, endKey);

  // now we're ready to build the solr indices quicky!
  for (Iterable<NameUsage> batch : Iterables.partition(usages, batchSize)) {
    final List<SolrInputDocument> docs = Lists.newArrayList();
    try {
      for (NameUsage usage : batch) {
        if (usage==null) {
          log.warn("Unexpected null usage found in range {}-{}, docCount={}", startKey, endKey, docCount);
          continue;
        }
        UsageExtensions ext = new UsageExtensions();
        ext.speciesProfiles = speciesProfileMap.get(usage.getKey());
        ext.vernacularNames = vernacularNameMap.get(usage.getKey());
        ext.descriptions = descriptionMap.get(usage.getKey());
        ext.distributions = distributionMap.get(usage.getKey());

        List<Integer> parents = nameUsageService.listParents(usage.getKey());

        docs.add(solrDocumentConverter.toDoc(usage, parents, ext));
        docCount++;
      }
      solrClient.add(docs);
      NameUsageBatchProcessor.counter.addAndGet(docs.size());

    } catch (Exception e) {
      log.error("Error indexing document for usage batch", e);
    }
  }

  // job finished notice
  stopWatch.stop();
  log.info("Finished indexing of usages in range {}-{}. Total time: {}", startKey, endKey, stopWatch.toString());

  return docCount;
}
 

import org.gbif.api.model.checklistbank.Distribution; //导入依赖的package包/类
public PagingResponse<Distribution> getDistributions(int usageKey, @Nullable Pageable page);