本文整理汇总了Java中org.cytoscape.view.model.View类的典型用法代码示例。如果您正苦于以下问题:Java View类的具体用法?Java View怎么用?Java View使用的例子?那么恭喜您, 这里精选的类代码示例或许可以为您提供帮助。
View类属于org.cytoscape.view.model包,在下文中一共展示了View类的15个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的Java代码示例。
示例1: forNodes
import org.cytoscape.view.model.View; //导入依赖的package包/类
public static CoordinateData forNodes(CyNetworkView networkView, Collection<CyNode> nodes) {
double xmin = 100000000;
double xmax = -100000000;
double ymin = 100000000;
double ymax = -100000000;
Map<CyNode,double[]> coordinates = new HashMap<>();
Map<CyNode,Double> radii = new HashMap<>();
for(CyNode node : nodes) {
View<CyNode> nodeView = networkView.getNodeView(node);
if(nodeView != null) {
double x = nodeView.getVisualProperty(BasicVisualLexicon.NODE_X_LOCATION);
double y = nodeView.getVisualProperty(BasicVisualLexicon.NODE_Y_LOCATION);
double radius = nodeView.getVisualProperty(BasicVisualLexicon.NODE_WIDTH);
coordinates.put(node, new double[]{x,y});
radii.put(node, radius);
xmin = Double.min(xmin, x);
xmax = Double.max(xmax, x);
ymin = Double.min(ymin, y);
ymax = Double.max(ymax, y);
}
}
return new CoordinateData(xmin, xmax, ymin, ymax, coordinates, radii);
}
示例2: createTaskIterator
import org.cytoscape.view.model.View; //导入依赖的package包/类
@Override
public TaskIterator createTaskIterator() {
TaskIterator tasks = new TaskIterator();
CyLayoutAlgorithm attributeCircle = layoutManager.getLayout("attributes-layout");
TaskIterator attributeLayoutTasks = attributeCircle.createTaskIterator(view, attributeCircle.createLayoutContext(), CyLayoutAlgorithm.ALL_NODE_VIEWS, layoutAttribute);
tasks.append(attributeLayoutTasks);
CyLayoutAlgorithm force_directed = layoutManager.getLayout("force-directed");
for(Collection<CyNode> cluster : clusters) {
Set<View<CyNode>> nodeViewSet = new HashSet<>();
for(CyNode node : cluster) {
nodeViewSet.add(view.getNodeView(node));
}
// Only apply layout to nodes of size greater than 4
if (nodeViewSet.size() > 4) {
TaskIterator forceTasks = force_directed.createTaskIterator(view, force_directed.createLayoutContext(), nodeViewSet, null);
tasks.append(forceTasks);
}
}
return tasks;
}
示例3: applyVisualStyle
import org.cytoscape.view.model.View; //导入依赖的package包/类
private void applyVisualStyle(CyNetworkView originNetworkView, CyNetworkView summaryNetworkView, SummaryNetwork summaryNetwork) {
VisualStyle vs = visualMappingManager.getVisualStyle(originNetworkView);
for(View<CyNode> nodeView : summaryNetworkView.getNodeViews()) {
// Label
String name = summaryNetworkView.getModel().getRow(nodeView.getModel()).get("name", String.class);
nodeView.setLockedValue(BasicVisualLexicon.NODE_LABEL, name);
// Node size
CyNode node = nodeView.getModel();
SummaryCluster cluster = summaryNetwork.getClusterFor(node);
int numNodes = cluster.getNodes().size();
nodeView.setLockedValue(BasicVisualLexicon.NODE_SIZE, (double)numNodes);
}
visualMappingManager.setVisualStyle(vs, summaryNetworkView);
}
示例4: UpdateNodeNames
import org.cytoscape.view.model.View; //导入依赖的package包/类
public static void UpdateNodeNames(CyNetworkView myNetView) {
if (done == 1) {
return;
}
CyNetwork myNetwork = myNetView.getModel();
DataConnectionRest dataConnection = new DataConnectionRest();
for (View<CyNode> myNode : myNetView.getNodeViews()) {
int nodeID = Integer.parseInt(myNetwork.getRow(myNode.getModel()).get(CyNetwork.NAME, String.class).replaceAll("\"", ""));
String userName = dataConnection.getUserNameFromID(nodeID);
myNode.setVisualProperty(BasicVisualLexicon.NODE_LABEL, userName);
myNode.setVisualProperty(BasicVisualLexicon.NODE_WIDTH, userName.length() * 7.5);
}
myNetView.updateView();
done = 1;
}
示例5: processCallResponse
import org.cytoscape.view.model.View; //导入依赖的package包/类
@Override
public void processCallResponse(ExtensionCall call, Object callRetValue) {
List<Double> values = (List<Double>)callRetValue;
CyTable defNodeTab = currNet.getDefaultNodeTable();
CyNetworkView networkView = getPlugin().getCyNetViewMgr().getNetworkViews(currNet).iterator().next();
for(int i = 0; i < (values.size() / 3); ++i){
Long neoid = values.get(i*3).longValue();
Double x = values.get(i*3+1);
Double y = values.get(i*3+2);
Set<CyNode> nodeSet = CyUtils.getNodesWithValue(currNet, defNodeTab, "neoid", neoid);
CyNode n = nodeSet.iterator().next();
View<CyNode> nodeView = networkView.getNodeView(n);
nodeView.setVisualProperty(BasicVisualLexicon.NODE_X_LOCATION, x);
nodeView.setVisualProperty(BasicVisualLexicon.NODE_Y_LOCATION, y);
CyUtils.updateVisualStyle(getPlugin().getVisualMappingManager(), networkView, currNet);
}
}
示例6: createNetworkView
import org.cytoscape.view.model.View; //导入依赖的package包/类
private CyNetworkView createNetworkView(SummaryNetwork summaryNetwork) {
CyNetworkView networkView = networkViewFactory.createNetworkView(summaryNetwork.network);
for(View<CyNode> nodeView : networkView.getNodeViews()) {
SummaryCluster cluster = summaryNetwork.getClusterFor(nodeView.getModel());
Point2D.Double center = cluster.getCoordinateData().getCenter();
nodeView.setVisualProperty(BasicVisualLexicon.NODE_X_LOCATION, center.x);
nodeView.setVisualProperty(BasicVisualLexicon.NODE_Y_LOCATION, center.y);
}
return networkView;
}
示例7: addNodes
import org.cytoscape.view.model.View; //导入依赖的package包/类
/**
* @desc - Adds nodes to the protein network from the information returned by the Slim* run.
* @param uniprotIDs - list of all Uniprot IDs input to the returned run.
* @param nodeIds - map linking all selected Uniprot IDs to their CyNodes, for easy access to the network.
* @param newNetwork - CyNetwork of the network being altered.
* @param networkViewManager - NetworkViewManager for the network being altered. Initialised in CyActivator.
* @param manager - CyApplicationManager for the network being altered. Initialised in CyActivator.
*/
public void addNodes (List<String> uniprotIDs, Map<String, CyNode> nodeIds, CyNetwork newNetwork,
CyNetworkViewManager networkViewManager, CyApplicationManager manager) {
// Add network view
final Collection<CyNetworkView> views = networkViewManager.getNetworkViews(newNetwork);
CyNetworkView myView = null;
if(views.size() != 0) {
myView = views.iterator().next();
}
if (myView == null) {
// create a new view for my network
myView = networkViewFactory.createNetworkView(newNetwork);
networkViewManager.addNetworkView(myView);
} else {
System.out.println("networkView already existed.");
}
CyNetworkView networkView = manager.getCurrentNetworkView();
for (Object o : nodeIds.entrySet()) {
Map.Entry pairs = (Map.Entry) o;
CyNode node = (CyNode) pairs.getValue();
View<CyNode> nodeView = networkView.getNodeView(node);
nodeView.setLockedValue(BasicVisualLexicon.NODE_SHAPE, NodeShapeVisualProperty.ELLIPSE);
nodeView.setLockedValue(BasicVisualLexicon.NODE_BORDER_PAINT, Color.BLACK);
nodeView.setLockedValue(BasicVisualLexicon.NODE_SIZE, 60.0);
}
}
示例8: createTaskIterator
import org.cytoscape.view.model.View; //导入依赖的package包/类
@Override
public TaskIterator createTaskIterator(View<CyEdge> view, CyNetworkView networkView) {
CytoPanel eastPanel = swingApplication.getCytoPanel(CytoPanelName.EAST);
eastPanel.setState(CytoPanelState.DOCK);
int index = eastPanel.indexOfComponent(evidencePanelComponent.getComponent());
eastPanel.setSelectedIndex(index);
return new TaskIterator(new NoOpTask());
}
示例9: isReady
import org.cytoscape.view.model.View; //导入依赖的package包/类
@Override
public boolean isReady(View<CyEdge> view, CyNetworkView cyNv) {
Long suid = view.getModel().getSUID();
CyTable evTable = getTable(BEL_EVIDENCE_TABLE, tableManager);
if (evTable == null) return false;
Collection<CyRow> rows = evTable.getMatchingRows(EDGE_SUID, suid);
return hasItems(rows);
}
示例10: UpdateNodeNameViewTask
import org.cytoscape.view.model.View; //导入依赖的package包/类
public UpdateNodeNameViewTask(View<CyNode> nodeView, CyNetworkView netView, CySwingAppAdapter adapter)
{
super(nodeView,netView);
UpdateNodeNameViewTask.netView = netView;
UpdateNodeNameViewTask.nodeView = nodeView;
this.adapter = adapter;
}
示例11: ShowFullEmailNetworkViewTask
import org.cytoscape.view.model.View; //导入依赖的package包/类
public ShowFullEmailNetworkViewTask(View<CyEdge> edgeView, CyNetworkView netView, CySwingAppAdapter myAdapter, int myMode)
{
super(netView);
ShowFullEmailNetworkViewTask.netView = netView;
ShowFullEmailNetworkViewTask.edgeView = edgeView;
adapter = myAdapter;
mode = myMode;
}
示例12: ShowAdjacentNodeViewTask
import org.cytoscape.view.model.View; //导入依赖的package包/类
public ShowAdjacentNodeViewTask(View<CyNode> nodeView, CyNetworkView netView, CySwingAppAdapter adapter)
{
super(nodeView,netView);
ShowAdjacentNodeViewTask.netView = netView;
ShowAdjacentNodeViewTask.nodeView = nodeView;
this.adapter = adapter;
}
示例13: ShowFullEmailEdgeViewTask
import org.cytoscape.view.model.View; //导入依赖的package包/类
public ShowFullEmailEdgeViewTask(View<CyEdge> edgeView, CyNetworkView netView, CySwingAppAdapter myAdapter, int myMode)
{
super(edgeView,netView);
ShowFullEmailEdgeViewTask.netView = netView;
ShowFullEmailEdgeViewTask.edgeView = edgeView;
adapter = myAdapter;
}
示例14: createMenuItem
import org.cytoscape.view.model.View; //导入依赖的package包/类
@Override
public CyMenuItem createMenuItem(CyNetworkView view, View<CyNode> nodeView) {
JMenuItem item = new JMenuItem("Extend with CyTargetLinker");
item.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
System.out.println(e.getSource());
}
});
float gravity = 1.0f;
CyMenuItem addAsSource = new CyMenuItem(item, gravity);
return addAsSource;
}
示例15: ExpandNetworkTask
import org.cytoscape.view.model.View; //导入依赖的package包/类
public ExpandNetworkTask(CyNetworkView cyNetworkView, View<CyNode> cyNodeView)
{
network = cyNetworkView.getModel();
columnSelection = getTargetColumns();
querySelection = new ListSingleSelection<String>("NEIGHBORHOOD","PATHSBETWEEN");
querySelection.setSelectedValue("NEIGHBORHOOD");
}