本文整理汇总了Java中org.biojava3.core.sequence.io.DNASequenceCreator类的典型用法代码示例。如果您正苦于以下问题：Java DNASequenceCreator类的具体用法？Java DNASequenceCreator怎么用？Java DNASequenceCreator使用的例子？那么, 这里精选的类代码示例或许可以为您提供帮助。
DNASequenceCreator类属于org.biojava3.core.sequence.io包，在下文中一共展示了DNASequenceCreator类的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Java代码示例。
示例1: filterFastaByLength
import org.biojava3.core.sequence.io.DNASequenceCreator; //导入依赖的package包/类
/**
* Filters a fasta file by length
*
* @param fastaIn the fasta file to filter
* @param fastaOut the filtered fasta file
* @param minLength the minimum contig length to keep
* @throws IOException
* @throws BioException
*/
public void filterFastaByLength(File fastaIn, File fastaOut, int minLength) throws IOException, BioException
{
FileWriter fw = new FileWriter(fastaOut.getAbsoluteFile());
String newLine = System.getProperty("line.separator");
FileInputStream inStream = new FileInputStream(fastaIn);
FastaReader<DNASequence, NucleotideCompound> fastaReader = new FastaReader<>(inStream,
new GenericFastaHeaderParser<DNASequence, NucleotideCompound>(),
new DNASequenceCreator(DNACompoundSet.getDNACompoundSet()));
LinkedHashMap<String, DNASequence> b = fastaReader.process();
for (Entry<String, DNASequence> entry : b.entrySet())
{
//System.out.println(entry.getValue().getOriginalHeader() + "=" + entry.getValue().getSequenceAsString());
if (entry.getValue().getSequenceAsString().length() >= minLength)
{
fw.write(">" + entry.getValue().getOriginalHeader() + newLine + entry.getValue().getSequenceAsString() + newLine);
}
}
fw.close();
}