Java LexBIGService类代码示例

import org.LexGrid.LexBIG.LexBIGService.LexBIGService; //导入依赖的package包/类
public static LexBIGService getLexBIGService(String serviceUrl) {
	SimpleRemoteServerUtil lexEVSSvr = null;
	try {
		if (serviceUrl == null || serviceUrl.compareTo("") == 0 || serviceUrl.compareToIgnoreCase("null") == 0) {
			LexBIGService lbSvc = LexBIGServiceImpl.defaultInstance();
			return lbSvc;
		}

		String meddra_token = ServiceTestCase.MEDDRA_TOKEN;
		lexEVSSvr = new SimpleRemoteServerUtil(serviceUrl);
		if (meddra_token != null && ServiceTestCase.MEDDRA_NAMES.length > 0) {
			Vector names = new Vector();
			Vector values = new Vector();
			for (int i=0; i<ServiceTestCase.MEDDRA_NAMES.length; i++) {
				String meddra_name = ServiceTestCase.MEDDRA_NAMES[i];
				names.add(meddra_name);
				values.add(meddra_token);
			}
			lexEVSSvr.setSecurityTokens(names, values);
		}
	} catch (Exception ex) {
		ex.printStackTrace();

	}
	return lexEVSSvr.getLexBIGService(serviceUrl);
}
 

import org.LexGrid.LexBIG.LexBIGService.LexBIGService; //导入依赖的package包/类
public void testExactMatch(String scheme, String version, String searchText, String algorithm) throws Exception {
System.out.println("\nscheme: " + scheme);
System.out.println("searchText: " + searchText);
System.out.println("algorithm: " + algorithm);

		CodingSchemeVersionOrTag versionOrTag = new CodingSchemeVersionOrTag();
		versionOrTag.setVersion(version);

		LexBIGService lbs = RemoteServerUtil.createLexBIGService();

		CodedNodeSet cns = lbs.getCodingSchemeConcepts(scheme, versionOrTag);
		cns = cns.restrictToMatchingDesignations(searchText, SearchDesignationOption.ALL, algorithm, null);
		ResolvedConceptReference[] list = null;
        int knt = 0;
		try {
		    list = cns.resolveToList(null, null, null, 500).getResolvedConceptReference();

			for(ResolvedConceptReference ref : list){
				displayRef(ref);
				knt++;
			}
		} catch (Exception ex) {
			System.out.println("Exception thrown #2");
		}
		if (knt == 0) System.out.println("No match.");
	}
 

import org.LexGrid.LexBIG.LexBIGService.LexBIGService; //导入依赖的package包/类
/**
  * Return a list of Association names
  *
  * @param scheme
  * @param version
  * @return
  */
 public Vector<String> getAssociationNames(String scheme, String version) {
     Vector<String> association_vec = new Vector<String>();
     try {
LexBIGService lbSvc = RemoteServerUtil.createLexBIGService();
         CodingSchemeVersionOrTag versionOrTag = new CodingSchemeVersionOrTag();
         if (version != null) {
	versionOrTag.setVersion(version);
}
         CodingScheme cs = lbSvc.resolveCodingScheme(scheme, versionOrTag);

         SupportedHierarchy[] hierarchies = cs.getMappings().getSupportedHierarchy();
         String[] ids = hierarchies[0].getAssociationNames();
         for (int i = 0; i < ids.length; i++) {
             if (!association_vec.contains(ids[i])) {
                 association_vec.add(ids[i]);
                 _logger.debug("AssociationName: " + ids[i]);
             }
         }
     } catch (Exception ex) {
         _logger.warn(ex.getMessage());
     }
     return association_vec;
 }
 

import org.LexGrid.LexBIG.LexBIGService.LexBIGService; //导入依赖的package包/类
@SuppressWarnings({ "unchecked", "rawtypes"})
public LexEvsMapEntryQueryService createService(
		FakeLexEvsSystem<MapEntry, MapEntryDirectoryEntry, MapEntryQuery, LexEvsMapEntryQueryService> fakeLexEvs, 
		boolean withData) throws Exception{
	LexEvsMapEntryQueryService service = new LexEvsMapEntryQueryService();

	// Mock LexBIGService, overwrite return value for getSupportedCodingSchemes
	LexBIGService lexBigService = fakeLexEvs.createMockedLexBIGServiceWithFakeLexEvsData(service, withData);
	
	service.setLexBigService(lexBigService);

	MappingToMapEntryTransform transform = EasyMock.createNiceMock(MappingToMapEntryTransform.class);
	EasyMock.replay(transform);

	// Overwrite objects in service object 
	service.setMapEntryTransformer(transform);
	service.setCodeSystemVersionNameConverter(new VersionNameConverter());
	service.setMappingExtension(new MappingExtensionImpl(fakeLexEvs));
	
	return service;
}
 

import org.LexGrid.LexBIG.LexBIGService.LexBIGService; //导入依赖的package包/类
/**
 * Resolves one or more paths from the hierarchy root to the given code
 * through a list of connected associations defined by the hierarchy.
 */
protected AssociationList getPathsFromRoot(LexBIGService lbsvc, LexBIGServiceConvenienceMethods lbscm,
        String scheme, CodingSchemeVersionOrTag csvt, String hierarchyID, String focusCode,
        Map<String, EntityDescription> codesToDescriptions) throws LBException {

    // Get paths from the focus code to the root from the
    // convenience method.  All paths are resolved.  If only
    // one path is required, it would be possible to use
    // HierarchyPathResolveOption.ONE to reduce processing
    // and improve overall performance.
    AssociationList pathToRoot = lbscm.getHierarchyPathToRoot(scheme, csvt, null, focusCode, false,
            HierarchyPathResolveOption.ALL, null);

    // But for purposes of this example we need to display info
    // in order coming from root direction. Process the paths to root
    // recursively to reverse the order for processing ...
    AssociationList pathFromRoot = new AssociationList();
    for (int i = pathToRoot.getAssociationCount() - 1; i >= 0; i--)
        reverseAssoc(lbsvc, lbscm, scheme, csvt, pathToRoot.getAssociation(i), pathFromRoot, codesToDescriptions);

    return pathFromRoot;
}
 

import org.LexGrid.LexBIG.LexBIGService.LexBIGService; //导入依赖的package包/类
public static void main(String[] args) throws Exception {
    args = parse(args);
    LexBIGService lbs = RemoteServerUtil.createLexBIGService();
    
    CodedNodeSet cns =
        lbs.getCodingSchemeConcepts("NCI MetaThesaurus", null);
    cns =
        cns.restrictToMatchingDesignations("single dose",
            SearchDesignationOption.ALL, "LuceneQuery", null);

    CodedNodeGraph cng = lbs.getNodeGraph("NCI MetaThesaurus", null, null);
    cng = cng.restrictToTargetCodes(cns);
    ResolvedConceptReferenceList list =
        cng.resolveAsList(null, true, false, 0, 0, null, null, null, null,
            500);

    for (ResolvedConceptReference ref : list.getResolvedConceptReference()) {
        System.out.println("Code: " + ref.getCode());
        System.out.println(" Entity Description"
            + ref.getEntityDescription().getContent());
    }
}
 

import org.LexGrid.LexBIG.LexBIGService.LexBIGService; //导入依赖的package包/类
public static LexBIGService getLexBIGService(String serviceUrl) {
	if (serviceUrl == null || serviceUrl.compareTo("") == 0 || serviceUrl.compareToIgnoreCase("null") == 0) {
		LexBIGService lbSvc = LexBIGServiceImpl.defaultInstance();
		return lbSvc;
	}

	String meddra_token = ServiceTestCase.MEDDRA_TOKEN;
	SimpleRemoteServerUtil lexEVSSvr = new SimpleRemoteServerUtil(serviceUrl);
	if (meddra_token != null && ServiceTestCase.MEDDRA_NAMES.length > 0) {
		Vector names = new Vector();
		Vector values = new Vector();
		for (int i=0; i<ServiceTestCase.MEDDRA_NAMES.length; i++) {
			String meddra_name = ServiceTestCase.MEDDRA_NAMES[i];
			names.add(meddra_name);
			values.add(meddra_token);
		}
		lexEVSSvr.setSecurityTokens(names, values);
	}
	return lexEVSSvr.getLexBIGService(serviceUrl);
}
 

import org.LexGrid.LexBIG.LexBIGService.LexBIGService; //导入依赖的package包/类
public ValueSetHierarchy(LexBIGService lbSvc,
                           LexEVSValueSetDefinitionServices vsd_service,
                           HashMap localName2FormalNameHashMap,
                           HashMap codingSchemeName2URIHashMap) {
this.lbSvc = lbSvc;
this.vsd_service = vsd_service;

codingSchemeDataUtils = new CodingSchemeDataUtils(lbSvc);
treeUtils = new TreeUtils(lbSvc);

try {
	valueSetDefinitionURIList = vsd_service.listValueSetDefinitionURIs();
} catch (Exception ex) {
          System.out.println("ERROR: vsd_service.listValueSetDefinitionURIs() failed.");
}

this.localName2FormalNameHashMap = localName2FormalNameHashMap;
if (localName2FormalNameHashMap != null) {
	this.vocabularyNameSet = localName2FormalNameHashMap.keySet();
}
      this.codingSchemeName2URIHashMap = codingSchemeName2URIHashMap;
      initialize();
  }
 

import org.LexGrid.LexBIG.LexBIGService.LexBIGService; //导入依赖的package包/类
public static Vector getMetadataValues(String scheme, String propertyName) {
      if (_formalName2MetadataHashMap == null) {
          setCodingSchemeMap();
      }

String formalName = getFormalName(scheme);
      if (!_formalName2MetadataHashMap.containsKey(formalName)) {
          return null;
      }
      Vector metadata = (Vector) _formalName2MetadataHashMap.get(formalName);
      if (metadata == null || metadata.size() == 0) {
          return null;
      }
      LexBIGService lbSvc = RemoteServerUtil.createLexBIGService();
      Vector v = new MetadataUtils(lbSvc).getMetadataValues(metadata, propertyName);
      return v;
  }
 

import org.LexGrid.LexBIG.LexBIGService.LexBIGService; //导入依赖的package包/类
public static <T extends ResourceQuery> ResolvedConceptReferenceResults getPage(
		LexBIGService lexBigService, 
		QueryData<T> queryData,
		SortCriteria cts2SortCriteria, 
		Page page){
	ResolvedConceptReferenceResults lexResolvedConceptResults = null;
	ResolvedConceptReferencesIterator lexResolvedConceptIterator;
	CodedNodeSet lexCodedNodeSet;
	
	lexCodedNodeSet = CommonResourceUtils.getLexCodedNodeSet(lexBigService, queryData, cts2SortCriteria);
			
	if(lexCodedNodeSet != null){
		lexResolvedConceptIterator = CommonUtils.getLexResolvedConceptIterator(lexCodedNodeSet, cts2SortCriteria);
		lexResolvedConceptResults = CommonPageUtils.getPage(lexResolvedConceptIterator, page);
	}
	
	return lexResolvedConceptResults;
}
 

import org.LexGrid.LexBIG.LexBIGService.LexBIGService; //导入依赖的package包/类
public static List<String> getDistinctNamespacesOfCode(
           String codingScheme,
           String version,
           String code) {

       try {
           LexBIGService lbSvc = RemoteServerUtil.createLexBIGService();
           LexBIGServiceConvenienceMethods lbscm =
               (LexBIGServiceConvenienceMethods) lbSvc
                   .getGenericExtension("LexBIGServiceConvenienceMethods");
           lbscm.setLexBIGService(lbSvc);

           CodingSchemeVersionOrTag csvt = new CodingSchemeVersionOrTag();
           csvt.setVersion(version);

           return lbscm.getDistinctNamespacesOfCode(codingScheme, csvt, code);
	} catch (Exception ex) {
		ex.printStackTrace();
	}
       return null;
}
 

import org.LexGrid.LexBIG.LexBIGService.LexBIGService; //导入依赖的package包/类
public static CodingScheme getCodingScheme(String codingScheme,
     CodingSchemeVersionOrTag versionOrTag) throws LBException {

     CodingScheme cs = null;
     try {
         LexBIGService lbSvc = RemoteServerUtil.createLexBIGService();
         cs = lbSvc.resolveCodingScheme(codingScheme, versionOrTag);
     } catch (Exception ex) {
         //ex.printStackTrace();
         if (versionOrTag.getVersion() != null) {
         	System.out.println("Unable to resolve coding scheme: " + codingScheme + " version: " + versionOrTag.getVersion());
} else {
         	System.out.println("Unable to resolve coding scheme: " + codingScheme);
}
     }
     return cs;
 }
 

import org.LexGrid.LexBIG.LexBIGService.LexBIGService; //导入依赖的package包/类
public static Vector getMappingCodingSchemesEntityParticipatesIn(String code, String namespace) {
       Vector v = new Vector();
       try {
		LexBIGService distributed = RemoteServerUtil.createLexBIGService();

		MappingExtension mappingExtension =
			(MappingExtension)distributed.getGenericExtension("MappingExtension");

		AbsoluteCodingSchemeVersionReferenceList mappingSchemes =
			mappingExtension.getMappingCodingSchemesEntityParticipatesIn(code, namespace);

		//output is all of the mapping ontologies that this code participates in.
		for(AbsoluteCodingSchemeVersionReference ref : mappingSchemes.getAbsoluteCodingSchemeVersionReference()){
			v.add(ref.getCodingSchemeURN() + "|" + ref.getCodingSchemeVersion());
		}

	} catch (Exception ex) {
           ex.printStackTrace();
       }
	return v;
}
 

import org.LexGrid.LexBIG.LexBIGService.LexBIGService; //导入依赖的package包/类
/**
  * Get concept Entity by code
  * @param codingScheme
  * @param code
  * @return
  */
 public ResolvedConceptReference getConceptByCode(String codingScheme, String version,
 		String code) {
     CodedNodeSet cns = null;
     ResolvedConceptReferencesIterator iterator = null;

     try {
LexBIGService lbSvc = RemoteServerUtil.createLexBIGService();
         CodingSchemeVersionOrTag csvt = new CodingSchemeVersionOrTag();
         if (version != null) csvt.setVersion(version);

         cns = lbSvc.getCodingSchemeConcepts(codingScheme, csvt);
         ConceptReferenceList crefs =
             createConceptReferenceList(new String[] { code }, codingScheme);
         cns.restrictToCodes(crefs);
         iterator = cns.resolve(null, null, null);
         if (iterator.numberRemaining() > 0) {
             ResolvedConceptReference ref = (ResolvedConceptReference) iterator.next();
             return ref;
         }
     } catch (LBException e) {
         _logger.info("Error: " + e.getMessage());
     }

     return null;
 }
 

import org.LexGrid.LexBIG.LexBIGService.LexBIGService; //导入依赖的package包/类
public static List<String> getDistinctNamespacesOfCode(
           String codingScheme,
           String version,
           String code) {

       try {
           LexBIGService lbSvc = RemoteServerUtil.createLexBIGService();
           LexBIGServiceConvenienceMethods lbscm =
               (LexBIGServiceConvenienceMethods) lbSvc
                   .getGenericExtension("LexBIGServiceConvenienceMethods");
           lbscm.setLexBIGService(lbSvc);

           CodingSchemeVersionOrTag csvt = new CodingSchemeVersionOrTag();
           csvt.setVersion(version);

           List<String> list = lbscm.getDistinctNamespacesOfCode(codingScheme, csvt, code);
           return list;
	} catch (Exception ex) {
		ex.printStackTrace();
	}
       return null;
}