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Java ImageJFunctions类代码示例

本文整理汇总了Java中net.imglib2.img.display.imagej.ImageJFunctions类的典型用法代码示例。如果您正苦于以下问题：Java ImageJFunctions类的具体用法？Java ImageJFunctions怎么用？Java ImageJFunctions使用的例子？那么, 这里精选的类代码示例或许可以为您提供帮助。


ImageJFunctions类属于net.imglib2.img.display.imagej包，在下文中一共展示了ImageJFunctions类的15个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Java代码示例。

示例1: main

import net.imglib2.img.display.imagej.ImageJFunctions; //导入依赖的package包/类
public static void main( String[] args )
{
	SpimData spimData = grid3x2();
	SequenceDescription sd = spimData.getSequenceDescription();
	ImgLoader i = sd.getImgLoader();

	TimePoint firstTp = sd.getTimePoints().getTimePointsOrdered().get( 0 );
	int tpId = firstTp.getId();

	for ( final ViewSetup vs: spimData.getSequenceDescription().getViewSetups().values() )
	{
		SetupImgLoader< ? > sil = i.getSetupImgLoader( vs.getId() );
		ViewDescription vd = sd.getViewDescription( tpId, vs.getId() );
		
		Tile t = vd.getViewSetup().getTile();

		if ( t.hasLocation() )
			System.out.println( "Loading: " + t.getName() + " " + Util.printCoordinates( t.getLocation() ) + " " + vd.getViewSetup().getChannel().getName() );
		else
			System.out.println( "Loading: " + t.getName() + " (unknown location) " + vd.getViewSetup().getChannel().getName() );
		
		ImageJFunctions.show( (RandomAccessibleInterval< UnsignedShortType >)sil.getImage( tpId, ImgLoaderHints.LOAD_COMPLETELY ) ).resetDisplayRange();
	}
}
开发者ID:PreibischLab，项目名称:BigStitcher，代码行数:25，代码来源:GenerateSpimData.java

示例2: main

import net.imglib2.img.display.imagej.ImageJFunctions; //导入依赖的package包/类
public static void main( String[] args )
{
	new ImageJ();
	
	Img< FloatType > img = ArrayImgs.floats( 500, 500 );
	BlendingRealRandomAccess blend = new BlendingRealRandomAccess(
			img,
			new float[]{ 100, 0 },
			new float[]{ 12, 150 } );
	
	Cursor< FloatType > c = img.localizingCursor();
	
	while ( c.hasNext() )
	{
		c.fwd();
		blend.setPosition( c );
		c.get().setReal( blend.get().getRealFloat() );
	}
	
	ImageJFunctions.show( img );
}
开发者ID:PreibischLab，项目名称:BigStitcher，代码行数:22，代码来源:BlendingRealRandomAccess.java

示例3: visualizeVisibleIds

import net.imglib2.img.display.imagej.ImageJFunctions; //导入依赖的package包/类
/**
 * Visualization to test how it works.
 *
 * @param screenLabels
 */
@SuppressWarnings( "unused" )
public static void visualizeVisibleIds(
		final RandomAccessibleInterval< Pair< LabelMultisetType, LongType > > screenLabels )
{
	final GoldenAngleSaturatedARGBStream argbStream =
			new GoldenAngleSaturatedARGBStream(
					new FragmentSegmentAssignment(
							new LocalIdService() ) );

	final RandomAccessibleInterval< ARGBType > convertedScreenLabels =
			Converters.convert(
					screenLabels,
					new PairLabelMultisetLongARGBConverter( argbStream ),
					new ARGBType() );

	ImageJFunctions.show( convertedScreenLabels );
}
开发者ID:saalfeldlab，项目名称:bigcat，代码行数:23，代码来源:PairLabelMultiSetLongIdPicker.java

示例4: run

import net.imglib2.img.display.imagej.ImageJFunctions; //导入依赖的package包/类
public void run(String arg0)
{
	// get the current ImageJ ImagePlus
	ImagePlus imp = WindowManager.getCurrentImage();
	
	// test if an image is open, otherwise load blobs
	if ( imp == null )
	{
		imp = new ImagePlus( getClass().getResource( "/blobs.tif" ).getFile() );
		imp.show();
	}

	// wrap it into an ImgLib2 Img (no copying)
	Img<FloatType> img = ImageJFunctions.wrapFloat( imp );

	// test if it could be wrapped
	if ( img == null )
	{
		IJ.log( "Cannot wrap image" );
		return;
	}

	// process wrapped image with ImgLib2
	process( img );
}
开发者ID:StephanPreibisch，项目名称:imglib2-introduction，代码行数:26，代码来源:ImgLib2_Gradient1.java

示例5: process

import net.imglib2.img.display.imagej.ImageJFunctions; //导入依赖的package包/类
public <T extends RealType<T>> void process( Img<T> img )
{
	// Define the transformation model
	RigidModel2D model = new RigidModel2D();
	model.set( (float)Math.toRadians( 15 ),  0, 0 );

	// Define the transformation model
	//TranslationModel2D model = new TranslationModel2D();
	//model.set( 10.1f, -12.34f );

	try
	{
		// compute the gradient on the image
		Img<T> transformed = transform( img, model );

		// show the new Img that contains the gradient
		ImageJFunctions.show( transformed );
	}
	catch ( NoninvertibleModelException e )
	{
		IJ.log( model + " cannot be inverted: " + e );
	}
}
开发者ID:StephanPreibisch，项目名称:imglib2-introduction，代码行数:24，代码来源:ImgLib2_Transform.java

示例6: run

import net.imglib2.img.display.imagej.ImageJFunctions; //导入依赖的package包/类
public void run(String arg0)
{
	// get the current ImageJ ImagePlus
	ImagePlus imp = WindowManager.getCurrentImage();
	
	// test if an image is open, otherwise load blobs
	if ( imp == null )
	{
		imp = new ImagePlus( getClass().getResource( "/blobs.tif" ).getFile() );
		imp.show();
	}

	// wrap it into an ImgLib2 Img (no copying)
	Img<FloatType> img = ImageJFunctions.wrapFloat( imp );

	// test if it could be wrapped
	if ( img == null )
	{
		IJ.log( "Cannot wrap image" );
		return;
	}
	
	// process wrapped image with ImgLib2
	process( img );
}
开发者ID:StephanPreibisch，项目名称:imglib2-introduction，代码行数:26，代码来源:ImgLib2_CenterOfMass2.java

示例7: run

import net.imglib2.img.display.imagej.ImageJFunctions; //导入依赖的package包/类
public void run(String arg0)
{
	// get the current ImageJ ImagePlus
	ImagePlus imp = WindowManager.getCurrentImage();
	
	// test if an image is open, otherwise load blobs
	if ( imp == null )
	{
		imp = new ImagePlus( getClass().getResource( "/blobs.tif" ).getFile() );
		imp.show();
	}

	// wrap it into an ImgLib2 Img (no copying)
	Img< FloatType > img = ImageJFunctions.wrapFloat( imp );

	if ( img == null )
	{
		IJ.log( "Cannot wrap image" );
		return;
	}
	
	// process wrapped image with ImgLib2
	process( img );
}
开发者ID:StephanPreibisch，项目名称:imglib2-introduction，代码行数:25，代码来源:ImgLib2_Threshold3.java

示例8: run

import net.imglib2.img.display.imagej.ImageJFunctions; //导入依赖的package包/类
public void run(String arg0)
{
	// get the current ImageJ ImagePlus
	ImagePlus imp = WindowManager.getCurrentImage();
	
	// test if an image is open, otherwise load blobs
	if ( imp == null )
	{
		imp = new ImagePlus( getClass().getResource( "/blobs.tif" ).getFile() );
		imp.show();
	}

	// wrap it into an ImgLib2 Img (no copying)
	Img<FloatType> img = ImageJFunctions.wrapFloat( imp );

	if ( img == null )
	{
		IJ.log( "Cannot wrap image" );
		return;
	}
	
	// process wrapped image with ImgLib2
	process( img );
}
开发者ID:StephanPreibisch，项目名称:imglib2-introduction，代码行数:25，代码来源:ImgLib2_Threshold4.java

示例9: run

import net.imglib2.img.display.imagej.ImageJFunctions; //导入依赖的package包/类
public void run(String arg0)
{
	// get the current ImageJ ImagePlus
	ImagePlus imp = WindowManager.getCurrentImage();
	
	// test if an image is open, otherwise load blobs
	if ( imp == null )
	{
		imp = new ImagePlus( getClass().getResource( "/blobs.tif" ).getFile() );
		imp.show();
	}

	// wrap it into an ImgLib2 Img (no copying)
	Img<FloatType> img = ImageJFunctions.wrapFloat( imp );

	// test if it could be wrapped
	if ( img == null )
	{
		IJ.log( "Cannot wrap image" );
		return;
	}
	// process wrapped image with ImgLib2
	process( img );
}
开发者ID:StephanPreibisch，项目名称:imglib2-introduction，代码行数:25，代码来源:ImgLib2_CenterOfMass1.java

示例10: act

import net.imglib2.img.display.imagej.ImageJFunctions; //导入依赖的package包/类
@Override
public < T extends RealType< T > > void act(
		final int iteration,
		final RandomAccessibleInterval< T > matrix,
		final RandomAccessibleInterval< T > scaledMatrix,
		final double[] lut,
		final int[] permutation,
		final int[] inversePermutation,
		final double[] multipliers,
		final RandomAccessibleInterval< double[] > estimatedFit )
{
	final T dummy = scaledMatrix.randomAccess().get().createVariable();
	dummy.setReal( Double.NaN );
	final String path = fileDir( iteration );
	if ( iteration == 0 )
		createParentDirectory( path );
	final LUTRealTransform tf = new LUTRealTransform( lut, 2, 2 );

	final RealTransformRealRandomAccessible< T, InverseRealTransform > transformed = RealViews.transformReal( Views.interpolate( Views.extendValue( scaledMatrix, dummy ), new NLinearInterpolatorFactory<>() ), tf );
	final double s = 1.0 / ( lut[ lut.length - 1 ] - lut[ 0 ] ) * lut.length;
	final double o = -lut[ 0 ];
	final ScaleAndTranslation scaleAndTranslation = new ScaleAndTranslation( new double[] { s, s }, new double[] { o, o } );
	final IntervalView< T > offset = Views.interval( Views.raster( RealViews.transformReal( transformed, scaleAndTranslation ) ), scaledMatrix );
	final RandomAccessibleInterval< T > strip = MatrixStripConversion.matrixToStrip( offset, range, dummy );
	new FileSaver( ImageJFunctions.wrap( strip, "" ) ).saveAsTiff( path );
}
开发者ID:saalfeldlab，项目名称:z-spacing，代码行数:27，代码来源:MatrixVisitor.java

示例11: main

import net.imglib2.img.display.imagej.ImageJFunctions; //导入依赖的package包/类
final static public void main( final String[] args )
	{
		new ImageJ();
		final ImagePlus imp = new ImagePlus( "http://media.npr.org/images/picture-show-flickr-promo.jpg" );
		imp.show();

		final float[] pixels = ( float[] ) imp.getProcessor().convertToFloat().getPixels();
		final ArrayImg< FloatType, FloatArray > img = ArrayImgs.floats( pixels, imp.getWidth(), imp.getHeight() );

		final double[] lut = new double[ Math.max( imp.getWidth(), imp.getHeight() ) ];
		for ( int i = 0; i < lut.length; ++i )
			lut[ i ] = i + Math.pow( i, 1.5 );

		final SingleDimensionLUTRealTransform transform = new SingleDimensionLUTRealTransform( lut, 2, 2, 1 );
		final RealRandomAccessible< FloatType > source = Views.interpolate( Views.extendBorder( img ), new NLinearInterpolatorFactory< FloatType >() );
		final RandomAccessible< FloatType > target = new RealTransformRandomAccessible< FloatType, RealTransform >( source, transform );
		final RandomAccessible< FloatType > target2 = RealViews.transform( source, transform );

//		RealViews.transformReal(source, transform);

		ImageJFunctions.show( Views.interval( target, new FinalInterval( imp.getWidth(), imp.getHeight() ) ) );
		ImageJFunctions.show( Views.interval( target2, new FinalInterval( imp.getWidth(), imp.getHeight() ) ) );
	}
开发者ID:saalfeldlab，项目名称:z-spacing，代码行数:24，代码来源:SingleDimensionLUTRealTransform.java

示例12: main

import net.imglib2.img.display.imagej.ImageJFunctions; //导入依赖的package包/类
public static void main( String[] args )
{
	final Img< FloatType > img;
	
	//img = OpenImg.open( "/Users/preibischs/Documents/Microscopy/SPIM/HisYFP-SPIM/img_Angle0.tif", new ArrayImgFactory< FloatType >() );
	img = new ArrayImgFactory< FloatType >().create( new long[]{ 515,  231, 15 }, new FloatType() );
	
	final Cursor< FloatType > c = img.localizingCursor();
	
	while ( c.hasNext() )
	{
		c.next().set( c.getIntPosition( 0 ) % 10 + c.getIntPosition( 1 ) % 13 + c.getIntPosition( 2 ) % 3 );
	}
	
	new ImageJ();
	ImageJFunctions.show( img );
	ImageJFunctions.show( simple2x( img, img.factory(), new boolean[]{ true, true, true } ) );
}
开发者ID:fiji，项目名称:SPIM_Registration，代码行数:19，代码来源:Downsample.java

示例13: main

import net.imglib2.img.display.imagej.ImageJFunctions; //导入依赖的package包/类
final static public void main( final String[] args )
{
	new ImageJ();
	
	Img< FloatType > img = null;
	try
	{
		ImgFactory< FloatType > imgFactory = new CellImgFactory<FloatType>( new int[] {64, 64} );
		final ImgOpener io = new ImgOpener();
		img = io.openImg( "/home/tobias/workspace/data/73_float.tif", imgFactory, new FloatType() );
	}
	catch ( Exception e )
	{
		e.printStackTrace();
		return;
	}

	ImageJFunctions.show( img );
}
开发者ID:imglib，项目名称:imglib2-tests，代码行数:20，代码来源:OpenAndDisplayWithCellContainer.java

示例14: getIntIntImgLabellingFromLabelMapImagePlus

import net.imglib2.img.display.imagej.ImageJFunctions; //导入依赖的package包/类
public static ImgLabeling< Integer, IntType > getIntIntImgLabellingFromLabelMapImagePlus( final ImagePlus labelMap )
{
	final Img< FloatType > img2 = ImageJFunctions.convertFloat( labelMap );

	final Dimensions dims = img2;
	final IntType t = new IntType();
	final RandomAccessibleInterval< IntType > img = Util.getArrayOrCellImgFactory( dims, t ).create( dims, t );
	final ImgLabeling< Integer, IntType > labeling = new ImgLabeling<>( img );

	final Cursor< LabelingType< Integer > > labelCursor = Views.flatIterable( labeling ).cursor();
	for ( final UnsignedByteType input : Views.flatIterable( ImageJFunctions.wrapByte( labelMap ) ) )
	{
		final LabelingType< Integer > element = labelCursor.next();
		if ( input.get() != 0 )
			element.add( input.get() );
	}

	return labeling;
}
开发者ID:imglib，项目名称:imglib2-tests，代码行数:20，代码来源:LabelingExample.java

示例15: main

import net.imglib2.img.display.imagej.ImageJFunctions; //导入依赖的package包/类
final static public void main( final String[] args )
{
	new ImageJ();

	Img< FloatType > img = null;
	try
	{
		final ImgFactory< FloatType > imgFactory = new ArrayImgFactory< FloatType >();
		final ImgOpener io = new ImgOpener();
		img = io.openImg( "/home/tobias/workspace/data/73_float.tif", imgFactory, new FloatType() );
	}
	catch ( final Exception e )
	{
		e.printStackTrace();
		return;
	}

	final RandomAccessibleInterval< FloatType > view = Views.hyperSlice( img, 2, 10 );

	ImageJFunctions.show( view );
}
开发者ID:imglib，项目名称:imglib2-tests，代码行数:22，代码来源:OpenAndDisplaySliceView.java


注：本文中的net.imglib2.img.display.imagej.ImageJFunctions类示例由纯净天空整理自Github/MSDocs等开源代码及文档管理平台，相关代码片段筛选自各路编程大神贡献的开源项目，源码版权归原作者所有，传播和使用请参考对应项目的License；未经允许，请勿转载。