本文整理汇总了Java中ca.uhn.fhir.context.FhirContext类的典型用法代码示例。如果您正苦于以下问题：Java FhirContext类的具体用法？Java FhirContext怎么用？Java FhirContext使用的例子？那么恭喜您, 这里精选的类代码示例或许可以为您提供帮助。
FhirContext类属于ca.uhn.fhir.context包，在下文中一共展示了FhirContext类的15个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Java代码示例。
示例1: deleteObservationBySpecimen
import ca.uhn.fhir.context.FhirContext; //导入依赖的package包/类
public static void deleteObservationBySpecimen(FhirContext oContext,List<String> listIdSpecimenToDelete, String serverUrl, String logFileName)
{
try
{
IGenericClient client=oContext.newRestfulGenericClient(serverUrl);
IBaseOperationOutcome resp=client.delete()
.resourceConditionalByType("Observation")
//.where(DiagnosticReport.SPECIMEN.hasId(idSpecimenToDelete))
.where(Observation.SPECIMEN.hasAnyOfIds(listIdSpecimenToDelete))
.execute();
if(resp!=null)
{
OperationOutcome outcome = (OperationOutcome) resp;
System.out.println(outcome.getIssueFirstRep().getDetailsElement().getValue());
}
}
catch (Exception exc)
{
FhirMediatorUtilities.writeInLogFile(logFileName,
exc.getMessage(),"Error");
}
}
示例2: deletePractitioner
import ca.uhn.fhir.context.FhirContext; //导入依赖的package包/类
public static void deletePractitioner(FhirContext oContext,List<IdDt> listIdsPractitioner, String serverUrl, String logFileName)
{
try
{
IGenericClient client=oContext.newRestfulGenericClient(serverUrl);
for(IdDt idToDelete:listIdsPractitioner)
{
IBaseOperationOutcome resp=client.delete()
.resourceById(idToDelete)
.execute();
if(resp!=null)
{
OperationOutcome outcome = (OperationOutcome) resp;
System.out.println(outcome.getIssueFirstRep().getDetailsElement().getValue());
}
}
}
catch (Exception exc)
{
FhirMediatorUtilities.writeInLogFile(logFileName,
exc.getMessage(),"Error");
}
}
示例3: deleteSpecimen
import ca.uhn.fhir.context.FhirContext; //导入依赖的package包/类
public static void deleteSpecimen(FhirContext oContext,List<IdDt> listIdsSpecimen, String serverUrl, String logFileName)
{
try
{
IGenericClient client=oContext.newRestfulGenericClient(serverUrl);
for(IdDt idToDelete:listIdsSpecimen)
{
IBaseOperationOutcome resp=client.delete()
.resourceById(idToDelete)
.execute();
if(resp!=null)
{
OperationOutcome outcome = (OperationOutcome) resp;
System.out.println(outcome.getIssueFirstRep().getDetailsElement().getValue());
}
}
}
catch (Exception exc)
{
FhirMediatorUtilities.writeInLogFile(logFileName,
exc.getMessage(),"Error");
}
}
示例4: read
import ca.uhn.fhir.context.FhirContext; //导入依赖的package包/类
@Override
public Patient read(FhirContext ctx, IdType theId) {
log.info("Looking for patient = "+theId.getIdPart());
if (daoutils.isNumeric(theId.getIdPart())) {
PatientEntity patientEntity = (PatientEntity) em.find(PatientEntity.class, Long.parseLong(theId.getIdPart()));
Patient patient = null;
if (patientEntity != null) {
patient = patientEntityToFHIRPatientTransformer.transform(patientEntity);
patientEntity.setResource(ctx.newJsonParser().encodeResourceToString(patient));
em.persist(patientEntity);
}
return patient;
} else {
return null;
}
}
示例5: validateCode
import ca.uhn.fhir.context.FhirContext; //导入依赖的package包/类
@Override
public CodeValidationResult validateCode(FhirContext theContext, String theCodeSystem, String theCode, String theDisplay) {
CodeSystem cs = fetchCodeSystem(theContext, theCodeSystem);
logD("CareConnect validateCode system = "+ theCodeSystem);
if (cs != null) {
boolean caseSensitive = true;
if (cs.hasCaseSensitive()) {
caseSensitive = cs.getCaseSensitive();
}
CodeValidationResult retVal = testIfConceptIsInList(theCode, cs.getConcept(), caseSensitive);
if (retVal != null) {
return retVal;
}
}
return new CodeValidationResult(IssueSeverity.WARNING, "CareConnect Unknown code: " + theCodeSystem + " / " + theCode);
}
开发者ID:nhsconnect，项目名称:careconnect-reference-implementation，代码行数:21，代码来源:CareConnectProfileValidationSupport.java
示例6: searchEntity
import ca.uhn.fhir.context.FhirContext; //导入依赖的package包/类
List<ProcedureEntity> searchEntity(FhirContext ctx,
@OptionalParam(name = Procedure.SP_PATIENT) ReferenceParam patient
,@OptionalParam(name = Procedure.SP_DATE) DateRangeParam date
, @OptionalParam(name = Procedure.SP_SUBJECT) ReferenceParam subject
, @OptionalParam(name = Procedure.SP_IDENTIFIER) TokenParam identifier
,@OptionalParam(name= Procedure.SP_RES_ID) TokenParam id
);
示例7: create
import ca.uhn.fhir.context.FhirContext; //导入依赖的package包/类
@Override
public Object create(String modelId, Map<String, Object> valueMap) throws ClassNotFoundException {
Gson gson = new GsonBuilder().
registerTypeAdapter(Double.class, (JsonSerializer<Double>) (src, typeOfSrc, context) -> {
if (src == src.longValue())
return new JsonPrimitive(src.longValue());
return new JsonPrimitive(src);
}).create();
String json = gson.toJson(valueMap);
Class modelClass = Class.forName(modelId);
IParser fhirContextParser = FhirContext.forDstu3().newJsonParser();
return fhirContextParser.parseResource(modelClass, json);
}
示例8: setup
import ca.uhn.fhir.context.FhirContext; //导入依赖的package包/类
@BeforeClass
public static void setup(){
dataProvider = new FileBasedFhirDstu2Provider(System.getProperty("user.dir") + "/src/test/resources/org/partners/usciitg_prep/fhir/cql/data", null);
dataProvider.setFhirContext(FhirContext.forDstu2Hl7Org());
dataProvider.setPackageName("org.hl7.fhir.instance.model");
terminologyProvider = new TestTerminologyProvider();
dataProvider.setTerminologyProvider(terminologyProvider);
contextValues = new HashMap<String, Object>();
contextParameters = new HashMap<String, Object>();
}
开发者ID:Discovery-Research-Network-SCCM，项目名称:FHIR-CQL-ODM-service，代码行数:13，代码来源:FileBasedFhirDstu2ProviderIT.java
示例9: testExecuteFluStudy
import ca.uhn.fhir.context.FhirContext; //导入依赖的package包/类
private Map<String, Object> testExecuteFluStudy(String endpoint, String patientId, String encounterStart, String encounterEnd) throws IOException, JAXBException {
UsciitgFhirDataProviderHL7 dataProvider = new UsciitgFhirDataProviderHL7();
dataProvider.setFhirContext(FhirContext.forDstu2Hl7Org());
dataProvider.setPackageName("org.hl7.fhir.instance.model");
dataProvider.setEndpoint(endpoint);
TerminologyProvider terminologyProvider = new TestTerminologyProvider();
dataProvider.setTerminologyProvider(terminologyProvider);
UsciitgLibraryManager libraryManager = new UsciitgLibraryManager(
new ModelManager(),
System.getProperty("user.dir") + "/src/test/resources/org/partners/usciitg_prep/fhir/cql");
LibraryLoader libraryLoader = new LibraryLoaderImpl(libraryManager);
VersionedIdentifier libraryIdentifier = new VersionedIdentifier()
.withId("usciitg_flu_study");
Map<String, Object> contextValues = new HashMap<String, Object>();
Map<String, Object> contextParameters = new HashMap<String, Object>();
Map<String, Object> results;
contextValues.put("Patient", patientId);
DateTime encounterStartDt = createCqfDateTime(encounterStart);
DateTime encounterEndDt = createCqfDateTime(encounterEnd);
contextParameters.put("EncounterStart", encounterStartDt);
contextParameters.put("EncounterEnd", encounterEndDt);
CqlExecutor executor = new CqlFhirExecutorImpl(dataProvider, terminologyProvider, libraryIdentifier, libraryLoader);
results = executor.execute(contextValues, contextParameters);
return results;
}
开发者ID:Discovery-Research-Network-SCCM，项目名称:FHIR-CQL-ODM-service，代码行数:33，代码来源:UsciitgFhirDataProviderHL7IT.java
示例10: readEntity
import ca.uhn.fhir.context.FhirContext; //导入依赖的package包/类
public OrganisationEntity readEntity(FhirContext ctx,IdType theId) {
if (theId.getIdPart() != null) {
OrganisationEntity organizationEntity = (OrganisationEntity) em.find(OrganisationEntity.class, Long.parseLong(theId.getIdPart()));
return organizationEntity;
} else {
return null;
}
}
示例11: read
import ca.uhn.fhir.context.FhirContext; //导入依赖的package包/类
@Override
public Condition read(FhirContext ctx,IdType theId) {
if (daoutils.isNumeric(theId.getIdPart())) {
ConditionEntity condition = (ConditionEntity) em.find(ConditionEntity.class, Long.parseLong(theId.getIdPart()));
return condition == null
? null
: conditionEntityToFHIRConditionTransformer.transform(condition);
} else {
return null;
}
}
示例12: createPractitionerInTransaction
import ca.uhn.fhir.context.FhirContext; //导入依赖的package包/类
public static String createPractitionerInTransaction(FhirContext oContext,List<Practitioner> listOfPractitioners,String serverUrl) throws Exception
{
Bundle respOutcome=null;
String stringTransactionResult="{TransactionResultStatus:no}";
try
{
Bundle resourceBundle=new Bundle();
resourceBundle.setType(BundleTypeEnum.TRANSACTION);
int compter=0;
for(Practitioner oPractitioner: listOfPractitioners)
{
String searchPattern="Practitioner?";
searchPattern+="_id="+oPractitioner.getId().getValueAsString();
Entry oBundleEntry= new Entry().setResource(oPractitioner);
oBundleEntry.setElementSpecificId(oPractitioner.getId().getValueAsString());
oBundleEntry.setFullUrl(oPractitioner.getId());
oBundleEntry.getRequest().setUrl(searchPattern).setMethod(HTTPVerbEnum.PUT);
resourceBundle.addEntry(oBundleEntry);
compter++;
//if(compter==5) break;
}
//String filePath1="/home/server-hit/Desktop/"+"Bundle.json";
//ManageJsonFile.saveResourceInJSONFile(resourceBundle,oContext,filePath1);
IGenericClient client=oContext.newRestfulGenericClient(serverUrl);
String resJSONFormat=oContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(resourceBundle);
respOutcome=client.transaction().withBundle(resourceBundle).execute();
//System.out.print(oContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(respOutcome));
if(respOutcome!=null)
{
stringTransactionResult=FhirResourceProcessor.extractResponseStaticsFromBundleTransactionRespons(respOutcome,1);
}
}
catch (Exception exc)
{
throw new Exception(exc.getMessage());
}
return stringTransactionResult;
}
示例13: search
import ca.uhn.fhir.context.FhirContext; //导入依赖的package包/类
@Override
public List<MedicationStatement> search(FhirContext ctx,ReferenceParam patient, DateRangeParam effectiveDate, TokenParam status, TokenParam resid) {
List<MedicationRequestEntity> prescriptions = prescriptionDao.searchEntity(ctx,patient,null,effectiveDate,status,null,null);
List<MedicationStatement> results = new ArrayList<>();
for (MedicationRequestEntity prescriptionEntity : prescriptions)
{
// log.trace("HAPI Custom = "+doc.getId());
MedicationStatement medicationStatement = medicationRequestEntityToFHIRMedicationStatementTransformer.transform(prescriptionEntity);
results.add(medicationStatement);
}
return results;
}
示例14: createListResourceInTransaction
import ca.uhn.fhir.context.FhirContext; //导入依赖的package包/类
public static String createListResourceInTransaction(FhirContext oContext,List<ListResource> listOfListResource,String serverUrl
,String logFileName) throws Exception
{
Bundle respOutcome=null;
String stringTransactionResult="{TransactionResultStatus:no}";
try
{
Bundle resourceBundle=new Bundle();
resourceBundle.setType(BundleTypeEnum.TRANSACTION);
int compter=0;
for(ListResource oListResource: listOfListResource)
{
Entry oBundleEntry= new Entry().setResource(oListResource);
oBundleEntry.getRequest().setMethod(HTTPVerbEnum.PUT);
resourceBundle.addEntry(oBundleEntry);
compter++;
//if(compter==5) break;
}
//String filePath1="/home/server-hit/Desktop/"+"Bundle.json";
//ManageJsonFile.saveResourceInJSONFile(resourceBundle,oContext,filePath1);
IGenericClient client=oContext.newRestfulGenericClient(serverUrl);
String resJSONFormat=oContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(resourceBundle);
respOutcome=client.transaction().withBundle(resourceBundle).execute();
//System.out.print(oContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(respOutcome));
if(respOutcome!=null)
{
stringTransactionResult=FhirResourceProcessor.extractResponseStaticsFromBundleTransactionRespons(respOutcome,1);
}
}
catch (Exception exc)
{
throw new Exception(exc.getMessage());
}
return stringTransactionResult;
}
示例15: createBundle
import ca.uhn.fhir.context.FhirContext; //导入依赖的package包/类
public static String createBundle(FhirContext oContext,List<Bundle> listOfBundles,String serverUrl) throws Exception
{
MethodOutcome respOutcome=null;
String stringTransactionResult="{TransactionResultStatus:no}";
try
{
IGenericClient client=oContext.newRestfulGenericClient(serverUrl);
int compter=0;
int nbreResourceCreated=0;
int total=listOfBundles.size();
for(Bundle oBundle: listOfBundles )
{
respOutcome=client.update()
.resource(oBundle)
.prettyPrint()
.encodedJson()
.execute();
if(respOutcome.getCreated())
{
nbreResourceCreated++;
}
}
int success=nbreResourceCreated;
int failed=total-success;
stringTransactionResult="total:"+total+"," +
"succes:"+success+"," +
"failed:"+failed+"}";
}
catch (Exception exc)
{
throw new Exception(exc.getMessage());
}
return stringTransactionResult;
}