本文整理汇总了Golang中github.com/TuftsBCB/tools/util.FlagParse函数的典型用法代码示例。如果您正苦于以下问题：Golang FlagParse函数的具体用法？Golang FlagParse怎么用？Golang FlagParse使用的例子？那么恭喜您, 这里精选的函数代码示例或许可以为您提供帮助。
在下文中一共展示了FlagParse函数的3个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Golang代码示例。
示例1: init
func init() {
runtime.GOMAXPROCS(runtime.NumCPU())
util.FlagUse("cpu")
util.FlagParse("database-path frag-lib-dir query-pdb-file "+
"[query-pdb-file ...]", "")
util.AssertLeastNArg(2)
}示例2: init
func init() {
flag.StringVar(&flagChain, "chain", flagChain,
"When set, only this chain will be tested for a correspondence. "+
"Otherwise, all chains will be tested.")
util.FlagParse("pdb-file", "")
util.AssertNArg(1)
}示例3: main
func main() {
flag.BoolVar(&flagAllFragments, "all-fragments", flagAllFragments,
"When set, all fragments will be shown, even if the best fragment\n"+
"of each residue set is the same.")
util.FlagParse(
"fraglib align.{fasta,ali,a2m,a3m} out-csv",
"Writes a CSV file to out-csv containing the best matching fragment\n"+
"for each pairwise contiguous set of residues between the\n"+
"first two proteins in the alignment.")
util.AssertNArg(3)
flib := util.SequenceLibrary(util.Arg(0))
aligned := util.MSA(util.Arg(1))
outcsv := util.CreateFile(util.Arg(2))
csvWriter := csv.NewWriter(outcsv)
csvWriter.Comma = '\t'
defer csvWriter.Flush()
pf := func(record ...string) {
util.Assert(csvWriter.Write(record), "Problem writing to '%s'", outcsv)
}
pf("start1", "end1", "start2", "end2", "frag1", "frag2", "rat1", "rat2")
iter := newContiguous(
flib.FragmentSize(), aligned.GetFasta(0), aligned.GetFasta(1))
for iter.next() {
best1 := flib.BestSequenceFragment(iter.res1)
best2 := flib.BestSequenceFragment(iter.res2)
if !flagAllFragments && best1 == best2 {
continue
}
if best1 == -1 || best2 == -1 {
continue
}
p1 := flib.AlignmentProb(best1, iter.res1)
p2 := flib.AlignmentProb(best2, iter.res2)
if p1.Distance(p2) > 0.14 {
continue
}
pf(
fmt.Sprintf("%d", iter.s1()),
fmt.Sprintf("%d", iter.e1()),
fmt.Sprintf("%d", iter.s2()),
fmt.Sprintf("%d", iter.e2()),
fmt.Sprintf("%d", best1),
fmt.Sprintf("%d", best2),
fmt.Sprintf("%f", p1),
fmt.Sprintf("%f", p2),
)
}
}