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Golang datastore.GetDataByUUIDName函数代码示例

本文整理汇总了Golang中github.com/janelia-flyem/dvid/datastore.GetDataByUUIDName函数的典型用法代码示例。如果您正苦于以下问题:Golang GetDataByUUIDName函数的具体用法?Golang GetDataByUUIDName怎么用?Golang GetDataByUUIDName使用的例子?那么恭喜您, 这里精选的函数代码示例或许可以为您提供帮助。


在下文中一共展示了GetDataByUUIDName函数的15个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的Golang代码示例。

示例1: TestReloadMetadata

func TestReloadMetadata(t *testing.T) {
	datastore.OpenTest()
	defer datastore.CloseTest()

	uuid, _ := datastore.NewTestRepo()

	// Add data instances
	var config dvid.Config
	server.CreateTestInstance(t, uuid, "keyvalue", "foo", config)
	server.CreateTestInstance(t, uuid, "labelblk", "labels", config)
	server.CreateTestInstance(t, uuid, "roi", "someroi", config)

	// Reload the metadata
	apiStr := fmt.Sprintf("%sserver/reload-metadata", server.WebAPIPath)
	server.TestHTTP(t, "POST", apiStr, nil)

	// Make sure repo UUID still there
	jsonStr, err := datastore.MarshalJSON()
	if err != nil {
		t.Fatalf("can't get repos JSON: %v\n", err)
	}
	var jsonResp map[string](map[string]interface{})

	if err := json.Unmarshal(jsonStr, &jsonResp); err != nil {
		t.Fatalf("Unable to unmarshal repos info response: %s\n", jsonStr)
	}
	if len(jsonResp) != 1 {
		t.Errorf("reloaded repos had more than one repo: %v\n", jsonResp)
	}
	for k := range jsonResp {
		if dvid.UUID(k) != uuid {
			t.Fatalf("Expected uuid %s, got %s.  Full JSON:\n%v\n", uuid, k, jsonResp)
		}
	}

	// Make sure the data instances are still there.
	_, err = datastore.GetDataByUUIDName(uuid, "foo")
	if err != nil {
		t.Errorf("Couldn't get keyvalue data instance after reload\n")
	}
	_, err = datastore.GetDataByUUIDName(uuid, "labels")
	if err != nil {
		t.Errorf("Couldn't get labelblk data instance after reload\n")
	}
	_, err = datastore.GetDataByUUIDName(uuid, "someroi")
	if err != nil {
		t.Errorf("Couldn't get roi data instance after reload\n")
	}
}
开发者ID:tartavull,项目名称:dvid,代码行数:49,代码来源:api_test.go

示例2: GetByUUIDName

// GetByUUIDName returns a pointer to annotation data given a version (UUID) and data name.
func GetByUUIDName(uuid dvid.UUID, name dvid.InstanceName) (*Data, error) {
	source, err := datastore.GetDataByUUIDName(uuid, name)
	if err != nil {
		return nil, err
	}
	data, ok := source.(*Data)
	if !ok {
		return nil, fmt.Errorf("Instance '%s' is not an annotation datatype!", name)
	}
	return data, nil
}
开发者ID:tartavull,项目名称:dvid,代码行数:12,代码来源:annotation.go

示例3: TestMultiscale2dRepoPersistence

func TestMultiscale2dRepoPersistence(t *testing.T) {
	datastore.OpenTest()
	defer datastore.CloseTest()

	// Make source
	uuid, _ := initTestRepo()
	makeGrayscale(uuid, t, "grayscale")

	// Make labels and set various properties
	config := dvid.NewConfig()
	config.Set("Placeholder", "true")
	config.Set("Format", "jpg")
	config.Set("Source", "grayscale")
	dataservice, err := datastore.NewData(uuid, mstype, "myimagetile", config)
	if err != nil {
		t.Errorf("Unable to create imagetile instance: %v\n", err)
	}
	msdata, ok := dataservice.(*Data)
	if !ok {
		t.Fatalf("Can't cast imagetile data service into imagetile.Data\n")
	}
	oldData := *msdata

	// Restart test datastore and see if datasets are still there.
	if err = datastore.SaveDataByUUID(uuid, msdata); err != nil {
		t.Fatalf("Unable to save repo during imagetile persistence test: %v\n", err)
	}
	datastore.CloseReopenTest()

	dataservice2, err := datastore.GetDataByUUIDName(uuid, "myimagetile")
	if err != nil {
		t.Fatalf("Can't get keyvalue instance from reloaded test db: %v\n", err)
	}
	msdata2, ok := dataservice2.(*Data)
	if !ok {
		t.Errorf("Returned new data instance 2 is not imagetile.Data\n")
	}

	if !reflect.DeepEqual(oldData.Properties, msdata2.Properties) {
		t.Errorf("Expected properties %v, got %v\n", oldData.Properties, msdata2.Properties)
	}
}
开发者ID:tartavull,项目名称:dvid,代码行数:42,代码来源:imagetile_test.go

示例4: TestFloat32RepoPersistence

func TestFloat32RepoPersistence(t *testing.T) {
	datastore.OpenTest()
	defer datastore.CloseTest()

	uuid, _ := initTestRepo()

	// Make grayscale and set various properties
	config := dvid.NewConfig()
	config.Set("BlockSize", "12,13,14")
	config.Set("VoxelSize", "1.1,2.8,11")
	config.Set("VoxelUnits", "microns,millimeters,nanometers")
	dataservice, err := datastore.NewData(uuid, floatimgT, "floatimg", config)
	if err != nil {
		t.Errorf("Unable to create float32 instance: %s\n", err)
	}
	floatimg, ok := dataservice.(*Data)
	if !ok {
		t.Errorf("Can't cast float32 data service into Data\n")
	}
	oldData := *floatimg

	// Restart test datastore and see if datasets are still there.
	if err = datastore.SaveDataByUUID(uuid, floatimg); err != nil {
		t.Fatalf("Unable to save repo during floatimg persistence test: %v\n", err)
	}
	datastore.CloseReopenTest()

	dataservice2, err := datastore.GetDataByUUIDName(uuid, "floatimg")
	if err != nil {
		t.Fatalf("Can't get floatimg instance from reloaded test db: %v\n", err)
	}
	floatimg2, ok := dataservice2.(*Data)
	if !ok {
		t.Errorf("Returned new data instance 2 is not imageblk.Data\n")
	}
	if !oldData.Equals(floatimg2) {
		t.Errorf("Expected %v, got %v\n", oldData, *floatimg2)
	}
}
开发者ID:janelia-flyem,项目名称:dvid,代码行数:39,代码来源:float32_test.go

示例5: TestMultichan16RepoPersistence

func TestMultichan16RepoPersistence(t *testing.T) {
	datastore.OpenTest()
	defer datastore.CloseTest()

	uuid, _ := initTestRepo()

	// Make labels and set various properties
	config := dvid.NewConfig()
	dataservice, err := datastore.NewData(uuid, dtype, "mymultichan16", config)
	if err != nil {
		t.Errorf("Unable to create multichan16 instance: %v\n", err)
	}
	mcdata, ok := dataservice.(*Data)
	if !ok {
		t.Errorf("Can't cast multichan16 data service into multichan16.Data\n")
	}
	oldData := *mcdata

	// Restart test datastore and see if datasets are still there.
	if err = datastore.SaveDataByUUID(uuid, mcdata); err != nil {
		t.Fatalf("Unable to save repo during multichan16 persistence test: %v\n", err)
	}
	datastore.CloseReopenTest()

	dataservice2, err := datastore.GetDataByUUIDName(uuid, "mymultichan16")
	if err != nil {
		t.Fatalf("Can't get multichan16 instance from reloaded test db: %v\n", err)
	}
	mcdata2, ok := dataservice2.(*Data)
	if !ok {
		t.Errorf("Returned new data instance 2 is not multichan16.Data\n")
	}
	if !oldData.Equals(mcdata2) {
		t.Errorf("Expected %v, got %v\n", oldData, *mcdata2)
	}
}
开发者ID:tartavull,项目名称:dvid,代码行数:36,代码来源:multichan16_test.go

示例6: TestFloatDirectCalls

func TestFloatDirectCalls(t *testing.T) {
	datastore.OpenTest()
	defer datastore.CloseTest()

	uuid, versionID := initTestRepo()

	server.CreateTestInstance(t, uuid, "float32blk", "floatimg", dvid.Config{})
	dataservice, err := datastore.GetDataByUUIDName(uuid, "floatimg")
	if err != nil {
		t.Fatal(err)
	}
	floatimg, ok := dataservice.(*Data)
	if !ok {
		t.Fatalf("Can't convert dataservice %v into imageblk.Data\n", dataservice)
	}
	ctx := datastore.NewVersionedCtx(floatimg, versionID)

	// Create a block-aligned 8-bit grayscale image
	offset := dvid.Point3d{512, 32, 1024}
	size := dvid.Point3d{128, 96, 64}
	subvol := dvid.NewSubvolume(offset, size)
	testvol := createFloatTestVolume(t, uuid, "floatimg", offset, size)
	origData := make([]byte, len(testvol.data))
	copy(origData, testvol.data)

	// Store it into datastore at root
	v, err := floatimg.NewVoxels(subvol, testvol.data)
	if err != nil {
		t.Fatalf("Unable to make new floatimg voxels: %v\n", err)
	}
	if err = floatimg.IngestVoxels(versionID, 1, v, ""); err != nil {
		t.Errorf("Unable to put voxels for %s: %v\n", ctx, err)
	}

	// Read the stored image
	v2, err := floatimg.NewVoxels(subvol, nil)
	if err != nil {
		t.Errorf("Unable to make new grayscale ExtHandler: %v\n", err)
	}
	if err = floatimg.GetVoxels(versionID, v2, ""); err != nil {
		t.Errorf("Unable to get voxels for %s: %v\n", ctx, err)
	}

	// Make sure the retrieved image matches the original
	if v.Stride() != v2.Stride() {
		t.Errorf("Stride in retrieved subvol incorrect\n")
	}
	if v.Interpolable() != v2.Interpolable() {
		t.Errorf("Interpolable bool in retrieved subvol incorrect\n")
	}
	if !reflect.DeepEqual(v.Size(), v2.Size()) {
		t.Errorf("Size in retrieved subvol incorrect: %s vs expected %s\n",
			v2.Size(), v.Size())
	}
	if v.NumVoxels() != v2.NumVoxels() {
		t.Errorf("# voxels in retrieved is different: %d vs expected %d\n",
			v2.NumVoxels(), v.NumVoxels())
	}
	if len(v.Data()) != len(v2.Data()) {
		t.Errorf("Expected %d bytes in retrieved data, got %d bytes\n", len(v.Data()), len(v2.Data()))
	}
	received := v2.Data()
	//dvid.PrintNonZero("original value", origData)
	//dvid.PrintNonZero("returned value", data)
	for i := int64(0); i < v2.NumVoxels(); i++ {
		if received[i] != origData[i] {
			t.Logf("Data returned != data stored for voxel %d\n", i)
			t.Logf("Size of data: %d bytes from GET, %d bytes in PUT\n", len(received), len(origData))
			t.Fatalf("GET subvol (%d) != PUT subvol (%d) @ index %d", received[i], origData[i], i)
		}
	}
}
开发者ID:janelia-flyem,项目名称:dvid,代码行数:72,代码来源:float32_test.go

示例7: ServeHTTP


//.........这里部分代码省略.........
				d.MaxTileCoord,
				d.Levels,
			}
			jsonBytes, err := json.Marshal(metadata)
			if err != nil {
				server.BadRequest(w, r, err)
				return
			}
			w.Header().Set("Content-Type", "application/json")
			fmt.Fprintf(w, string(jsonBytes))
		}
		timedLog.Infof("HTTP %s: metadata (%s)", r.Method, r.URL)

	case "tile":
		switch action {
		case "post":
			err := d.PostTile(ctx, w, r, parts)
			if err != nil {
				server.BadRequest(w, r, "Error in posting tile with URL %q: %v\n", url, err)
				return
			}
		case "get":
			if err := d.ServeTile(ctx, w, r, parts); err != nil {
				server.BadRequest(w, r, err)
				return
			}
		}
		timedLog.Infof("HTTP %s: tile (%s)", r.Method, r.URL)

	case "tilekey":
		switch action {
		case "get":
			var err error
			var hexkey string
			if hexkey, err = d.GetTileKey(ctx, w, r, parts); err != nil {
				server.BadRequest(w, r, err)
				return
			}
			w.Header().Set("Content-Type", "application/json")
			fmt.Fprintf(w, `{"key": "%s"}`, hexkey)
			timedLog.Infof("HTTP %s: tilekey (%s) returns %s", r.Method, r.URL, hexkey)
		default:
			server.BadRequest(w, r, fmt.Errorf("Cannot use HTTP %s for tilekey endpoint", action))
			return
		}

	case "raw", "isotropic":
		if action == "post" {
			server.BadRequest(w, r, "imagetile '%s' can only PUT tiles not images", d.DataName())
			return
		}
		if len(parts) < 7 {
			server.BadRequest(w, r, "%q must be followed by shape/size/offset", parts[3])
			return
		}
		shapeStr, sizeStr, offsetStr := parts[4], parts[5], parts[6]
		planeStr := dvid.DataShapeString(shapeStr)
		plane, err := planeStr.DataShape()
		if err != nil {
			server.BadRequest(w, r, err)
			return
		}
		if plane.ShapeDimensions() != 2 {
			server.BadRequest(w, r, "Quadtrees can only return 2d images not %s", plane)
			return
		}
		slice, err := dvid.NewSliceFromStrings(planeStr, offsetStr, sizeStr, "_")
		if err != nil {
			server.BadRequest(w, r, err)
			return
		}
		source, err := datastore.GetDataByUUIDName(uuid, d.Source)
		if err != nil {
			server.BadRequest(w, r, err)
			return
		}
		src, ok := source.(*imageblk.Data)
		if !ok {
			server.BadRequest(w, r, "Cannot construct imagetile for non-voxels data: %s", d.Source)
			return
		}
		img, err := d.GetImage(ctx, src, slice, parts[3] == "isotropic")
		if err != nil {
			server.BadRequest(w, r, err)
			return
		}
		var formatStr string
		if len(parts) >= 8 {
			formatStr = parts[7]
		}
		err = dvid.WriteImageHttp(w, img.Get(), formatStr)
		if err != nil {
			server.BadRequest(w, r, err)
			return
		}
		timedLog.Infof("HTTP %s: tile-accelerated %s %s (%s)", r.Method, planeStr, parts[3], r.URL)
	default:
		server.BadAPIRequest(w, r, d)
	}
}
开发者ID:tartavull,项目名称:dvid,代码行数:101,代码来源:imagetile.go

示例8: DefaultTileSpec

// DefaultTileSpec returns the default tile spec that will fully cover the source extents and
// scaling 0 uses the original voxel resolutions with each subsequent scale causing a 2x zoom out.
func (d *Data) DefaultTileSpec(uuidStr string) (TileSpec, error) {
	uuid, _, err := datastore.MatchingUUID(uuidStr)
	if err != nil {
		return nil, err
	}
	source, err := datastore.GetDataByUUIDName(uuid, d.Source)
	if err != nil {
		return nil, err
	}
	var ok bool
	var src *imageblk.Data
	src, ok = source.(*imageblk.Data)
	if !ok {
		return nil, fmt.Errorf("Cannot construct tile spec for non-voxels data: %s", d.Source)
	}

	// Set scaling 0 based on extents and resolution of source.
	//extents := src.Extents()
	resolution := src.Properties.Resolution.VoxelSize

	if len(resolution) != 3 {
		return nil, fmt.Errorf("Cannot construct tile spec for non-3d data: voxel is %d-d",
			len(resolution))
	}

	// Expand min and max points to coincide with full tile boundaries of highest resolution.
	minTileCoord := src.MinPoint.(dvid.Chunkable).Chunk(DefaultTileSize)
	maxTileCoord := src.MaxPoint.(dvid.Chunkable).Chunk(DefaultTileSize)
	minTiledPt := minTileCoord.MinPoint(DefaultTileSize)
	maxTiledPt := maxTileCoord.MaxPoint(DefaultTileSize)
	sizeVolume := maxTiledPt.Sub(minTiledPt).AddScalar(1)

	dvid.Infof("Creating default multiscale tile spec for volume of size %s\n", sizeVolume)

	// For each dimension, calculate the number of scaling levels necessary to cover extent,
	// assuming we use the raw resolution at scaling 0.
	numScales := make([]int, 3)
	var maxScales int
	var dim uint8
	for dim = 0; dim < 3; dim++ {
		numPixels := float64(sizeVolume.Value(dim))
		tileSize := float64(DefaultTileSize.Value(dim))
		if numPixels <= tileSize {
			numScales[dim] = 1
		} else {
			numScales[dim] = int(math.Ceil(math.Log2(numPixels/tileSize))) + 1
		}
		if numScales[dim] > maxScales {
			maxScales = numScales[dim]
		}
	}

	// Initialize the tile level specification
	specs := make(TileSpec, maxScales)
	curRes := resolution
	levelMag := dvid.Point3d{2, 2, 2}
	var scaling Scaling
	for scaling = 0; scaling < Scaling(maxScales); scaling++ {
		for dim = 0; dim < 3; dim++ {
			if scaling >= Scaling(numScales[dim]) {
				levelMag[dim] = 1
			}
		}
		specs[scaling] = TileScaleSpec{
			LevelSpec{curRes, DefaultTileSize},
			levelMag,
		}
		curRes = curRes.MultScalar(2.0)
	}
	return specs, nil
}
开发者ID:tartavull,项目名称:dvid,代码行数:73,代码来源:imagetile.go

示例9: ConstructTiles

func (d *Data) ConstructTiles(uuidStr string, tileSpec TileSpec, request datastore.Request) error {
	config := request.Settings()
	uuid, versionID, err := datastore.MatchingUUID(uuidStr)
	if err != nil {
		return err
	}

	if err = datastore.AddToNodeLog(uuid, []string{request.Command.String()}); err != nil {
		return err
	}

	source, err := datastore.GetDataByUUIDName(uuid, d.Source)
	if err != nil {
		return fmt.Errorf("Cannot get source %q for %q tile construction: %v", d.Source, d.DataName(), err)
	}
	src, ok := source.(*imageblk.Data)
	if !ok {
		return fmt.Errorf("Cannot construct imagetile for non-voxels data: %s", d.Source)
	}

	// Get size of tile at lowest resolution.
	lastLevel := Scaling(len(tileSpec) - 1)
	loresSpec, found := tileSpec[lastLevel]
	if !found {
		return fmt.Errorf("Illegal tile spec.  Should have levels 0 to absent %d.", lastLevel)
	}
	var loresSize [3]float64
	for i := 0; i < 3; i++ {
		loresSize[i] = float64(loresSpec.Resolution[i]) * float64(DefaultTileSize[i])
	}
	loresMag := dvid.Point3d{1, 1, 1}
	for i := Scaling(0); i < lastLevel; i++ {
		levelMag := tileSpec[i].levelMag
		loresMag[0] *= levelMag[0]
		loresMag[1] *= levelMag[1]
		loresMag[2] *= levelMag[2]
	}

	// Get min and max points in terms of distance.
	var minPtDist, maxPtDist [3]float64
	for i := uint8(0); i < 3; i++ {
		minPtDist[i] = float64(src.MinPoint.Value(i)) * float64(src.VoxelSize[i])
		maxPtDist[i] = float64(src.MaxPoint.Value(i)) * float64(src.VoxelSize[i])
	}

	// Adjust min and max points for the tileable surface at lowest resolution.
	var minTiledPt, maxTiledPt dvid.Point3d
	for i := 0; i < 3; i++ {
		minInt, _ := math.Modf(minPtDist[i] / loresSize[i])
		maxInt, _ := math.Modf(maxPtDist[i] / loresSize[i])
		d.MinTileCoord[i] = int32(minInt)
		d.MaxTileCoord[i] = int32(maxInt)
		minTiledPt[i] = d.MinTileCoord[i] * DefaultTileSize[i] * loresMag[i]
		maxTiledPt[i] = (d.MaxTileCoord[i]+1)*DefaultTileSize[i]*loresMag[i] - 1
	}
	sizeVolume := maxTiledPt.Sub(minTiledPt).AddScalar(1)

	// Save the current tile specification
	d.Levels = tileSpec
	if err := datastore.SaveDataByUUID(uuid, d); err != nil {
		return err
	}

	// Setup swappable ExtData buffers (the stitched slices) so we can be generating tiles
	// at same time we are reading and stitching them.
	var bufferLock [2]sync.Mutex
	var sliceBuffers [2]*imageblk.Voxels
	var bufferNum int

	// Get the planes we should tile.
	planes, err := config.GetShapes("planes", ";")
	if err != nil {
		return err
	}
	if planes == nil {
		// If no planes are specified, construct imagetile for 3 orthogonal planes.
		planes = []dvid.DataShape{dvid.XY, dvid.XZ, dvid.YZ}
	}

	outF, err := d.putTileFunc(versionID)
	if err != nil {
		return err
	}

	// Get bounds for tiling if specified
	minx, maxx, err := config.GetRange("xrange", ",")
	if err != nil {
		return err
	}
	miny, maxy, err := config.GetRange("yrange", ",")
	if err != nil {
		return err
	}
	minz, maxz, err := config.GetRange("zrange", ",")
	if err != nil {
		return err
	}

	// sort the tile spec keys to iterate from highest to lowest resolution
	var sortedKeys []int
//.........这里部分代码省略.........
开发者ID:tartavull,项目名称:dvid,代码行数:101,代码来源:imagetile.go

示例10: CreateComposite

// CreateComposite creates a new rgba8 image by combining hash of labels + the grayscale
func (d *Data) CreateComposite(request datastore.Request, reply *datastore.Response) error {
	timedLog := dvid.NewTimeLog()

	// Parse the request
	var uuidStr, dataName, cmdStr, grayscaleName, destName string
	request.CommandArgs(1, &uuidStr, &dataName, &cmdStr, &grayscaleName, &destName)

	// Get the version
	uuid, v, err := datastore.MatchingUUID(uuidStr)
	if err != nil {
		return err
	}

	// Log request
	if err = datastore.AddToNodeLog(uuid, []string{request.Command.String()}); err != nil {
		return err
	}

	// Get the grayscale data.
	dataservice, err := datastore.GetDataByUUIDName(uuid, dvid.InstanceName(grayscaleName))
	if err != nil {
		return err
	}
	grayscale, ok := dataservice.(*imageblk.Data)
	if !ok {
		return fmt.Errorf("%s is not the name of uint8 data", grayscaleName)
	}

	// Create a new rgba8blk data.
	var compservice datastore.DataService
	compservice, err = datastore.GetDataByUUIDName(uuid, dvid.InstanceName(destName))
	if err == nil {
		return fmt.Errorf("Data instance with name %q already exists", destName)
	}
	typeService, err := datastore.TypeServiceByName("rgba8blk")
	if err != nil {
		return fmt.Errorf("Could not get rgba8 type service from DVID")
	}
	config := dvid.NewConfig()
	compservice, err = datastore.NewData(uuid, typeService, dvid.InstanceName(destName), config)
	if err != nil {
		return err
	}
	composite, ok := compservice.(*imageblk.Data)
	if !ok {
		return fmt.Errorf("Error: %s was unable to be set to rgba8 data", destName)
	}

	// Iterate through all labels and grayscale chunks incrementally in Z, a layer at a time.
	wg := new(sync.WaitGroup)
	op := &compositeOp{grayscale, composite, v}
	chunkOp := &storage.ChunkOp{op, wg}

	store, err := d.GetOrderedKeyValueDB()
	if err != nil {
		return err
	}
	ctx := datastore.NewVersionedCtx(d, v)
	extents := d.Extents()
	blockBeg := imageblk.NewTKey(extents.MinIndex)
	blockEnd := imageblk.NewTKey(extents.MaxIndex)
	err = store.ProcessRange(ctx, blockBeg, blockEnd, chunkOp, storage.ChunkFunc(d.CreateCompositeChunk))
	wg.Wait()

	// Set new mapped data to same extents.
	composite.Properties.Extents = grayscale.Properties.Extents
	if err := datastore.SaveDataByUUID(uuid, composite); err != nil {
		dvid.Infof("Could not save new data '%s': %v\n", destName, err)
	}

	timedLog.Infof("Created composite of %s and %s", grayscaleName, destName)
	return nil
}
开发者ID:tartavull,项目名称:dvid,代码行数:74,代码来源:composite.go

示例11: TestLabels

func TestLabels(t *testing.T) {
	datastore.OpenTest()
	defer datastore.CloseTest()

	// Create testbed volume and data instances
	uuid, _ := initTestRepo()
	var config dvid.Config
	server.CreateTestInstance(t, uuid, "labelblk", "labels", config)
	server.CreateTestInstance(t, uuid, "labelvol", "bodies", config)

	// Establish syncs
	server.CreateTestSync(t, uuid, "labels", "bodies")
	server.CreateTestSync(t, uuid, "bodies", "labels")

	// Populate the labels, which should automatically populate the labelvol
	_ = createLabelTestVolume(t, uuid, "labels")

	if err := datastore.BlockOnUpdating(uuid, "labels"); err != nil {
		t.Fatalf("Error blocking on sync of labels: %v\n", err)
	}

	// Add annotations syncing with "labels" instance checking for deduplication.
	server.CreateTestInstance(t, uuid, "annotation", "mysynapses", config)
	server.CreateTestSync(t, uuid, "mysynapses", "labels,bodies,labels,bodies,labels,bodies")
	dataservice, err := datastore.GetDataByUUIDName(uuid, "mysynapses")
	if err != nil {
		t.Fatal(err)
	}
	data, ok := dataservice.(*Data)
	if !ok {
		t.Fatalf("Can't convert dataservice %v into datastore.Data\n", dataservice)
	}
	if len(data.SyncedData()) != 2 {
		t.Fatalf("Expected 2 syncs (uuids for labels and bodies], got %v\n", data.SyncedData())
	}

	// PUT first batch of synapses
	testJSON, err := json.Marshal(testData)
	if err != nil {
		t.Fatal(err)
	}
	url1 := fmt.Sprintf("%snode/%s/mysynapses/elements", server.WebAPIPath, uuid)
	server.TestHTTP(t, "POST", url1, strings.NewReader(string(testJSON)))

	// Test if labels were properly denormalized.  For the POST we have synchronized label denormalization.
	// If this were to become asynchronous, we'd want to block on updating like the labelblk<->labelvol sync.

	testResponseLabel(t, expectedLabel1, "%snode/%s/mysynapses/label/1?relationships=true", server.WebAPIPath, uuid)
	testResponseLabel(t, expectedLabel2, "%snode/%s/mysynapses/label/2?relationships=true", server.WebAPIPath, uuid)
	testResponseLabel(t, expectedLabel3, "%snode/%s/mysynapses/label/3?relationships=true", server.WebAPIPath, uuid)
	testResponseLabel(t, expectedLabel3NoRel, "%snode/%s/mysynapses/label/3", server.WebAPIPath, uuid)
	testResponseLabel(t, expectedLabel4, "%snode/%s/mysynapses/label/4?relationships=true", server.WebAPIPath, uuid)

	// Make change to labelblk and make sure our label synapses have been adjusted (case A)
	_ = modifyLabelTestVolume(t, uuid, "labels")

	if err := datastore.BlockOnUpdating(uuid, "mysynapses"); err != nil {
		t.Fatalf("Error blocking on sync of labels->annotations: %v\n", err)
	}

	testResponseLabel(t, expectedLabel1, "%snode/%s/mysynapses/label/1?relationships=true", server.WebAPIPath, uuid)
	testResponseLabel(t, expectedLabel2a, "%snode/%s/mysynapses/label/2?relationships=true", server.WebAPIPath, uuid)
	testResponseLabel(t, expectedLabel3a, "%snode/%s/mysynapses/label/3?relationships=true", server.WebAPIPath, uuid)
	testResponseLabel(t, expectedLabel4, "%snode/%s/mysynapses/label/4?relationships=true", server.WebAPIPath, uuid)
	testResponseLabel(t, expectedLabel4NoRel, "%snode/%s/mysynapses/label/4", server.WebAPIPath, uuid)

	// Make change to labelvol and make sure our label synapses have been adjusted (case B).
	// Merge 3a into 2a.
	testMerge := mergeJSON(`[2, 3]`)
	testMerge.send(t, uuid, "bodies")

	if err := datastore.BlockOnUpdating(uuid, "labels"); err != nil {
		t.Fatalf("Error blocking on sync of labels: %v\n", err)
	}

	if err := datastore.BlockOnUpdating(uuid, "mysynapses"); err != nil {
		t.Fatalf("Error blocking on sync of synapses: %v\n", err)
	}

	testResponseLabel(t, expectedLabel1, "%snode/%s/mysynapses/label/1?relationships=true", server.WebAPIPath, uuid)
	testResponseLabel(t, expectedLabel2b, "%snode/%s/mysynapses/label/2?relationships=true", server.WebAPIPath, uuid)
	testResponseLabel(t, nil, "%snode/%s/mysynapses/label/3?relationships=true", server.WebAPIPath, uuid)
	testResponseLabel(t, expectedLabel4, "%snode/%s/mysynapses/label/4?relationships=true", server.WebAPIPath, uuid)

	// Now split label 2b off and check if annotations also split

	// Create the sparsevol encoding for split area
	numspans := len(bodysplit.voxelSpans)
	rles := make(dvid.RLEs, numspans, numspans)
	for i, span := range bodysplit.voxelSpans {
		start := dvid.Point3d{span[2], span[1], span[0]}
		length := span[3] - span[2] + 1
		rles[i] = dvid.NewRLE(start, length)
	}
	buf := getBytesRLE(t, rles)

	// Submit the split sparsevol
	reqStr := fmt.Sprintf("%snode/%s/%s/split/%d?splitlabel=7", server.WebAPIPath, uuid, "bodies", 2)
	r := server.TestHTTP(t, "POST", reqStr, buf)
	jsonVal := make(map[string]uint64)
//.........这里部分代码省略.........
开发者ID:tartavull,项目名称:dvid,代码行数:101,代码来源:annotation_test.go

示例12: TestROIRepoPersistence

func TestROIRepoPersistence(t *testing.T) {
	datastore.OpenTest()
	defer datastore.CloseTest()

	uuid, _ := initTestRepo()

	// Add data
	config := dvid.NewConfig()
	dataservice1, err := datastore.NewData(uuid, roitype, "myroi", config)
	if err != nil {
		t.Errorf("Error creating new roi instance: %v\n", err)
	}
	roi1, ok := dataservice1.(*Data)
	if !ok {
		t.Errorf("Returned new data instance 1 is not roi.Data\n")
	}
	if roi1.DataName() != "myroi" {
		t.Errorf("New roi data instance name set incorrectly: %q != %q\n",
			roi1.DataName(), "myroi")
	}

	config.Set("BlockSize", "15,16,17")
	dataservice2, err := datastore.NewData(uuid, roitype, "myroi2", config)
	if err != nil {
		t.Errorf("Error creating new roi instance: %v\n", err)
	}
	roi2, ok := dataservice2.(*Data)
	if !ok {
		t.Errorf("Returned new data instance 2 is not roi.Data\n")
	}
	roi2.MinZ = 13
	roi2.MaxZ = 3098
	oldData := *roi2

	// Check instance IDs
	if roi1.InstanceID() == roi2.InstanceID() {
		t.Errorf("Instance IDs should be different: %d == %d\n",
			roi1.InstanceID(), roi2.InstanceID())
	}

	// Restart test datastore and see if datasets are still there.
	if err = datastore.SaveDataByUUID(uuid, dataservice1); err != nil {
		t.Fatalf("Unable to save data1 during ROI persistence test: %v\n", err)
	}
	if err = datastore.SaveDataByUUID(uuid, dataservice2); err != nil {
		t.Fatalf("Unable to save data2 during ROI persistence test: %v\n", err)
	}

	datastore.CloseReopenTest()

	dataservice3, err := datastore.GetDataByUUIDName(uuid, "myroi2")
	if err != nil {
		t.Fatalf("Can't get first ROI instance from reloaded test db: %v\n", err)
	}
	roi2new, ok := dataservice3.(*Data)
	if !ok {
		t.Errorf("Returned new data instance 3 is not roi.Data\n")
	}
	if !oldData.Equals(roi2new) {
		t.Errorf("Expected %v, got %v\n", oldData, *roi2new)
	}
}
开发者ID:tartavull,项目名称:dvid,代码行数:62,代码来源:roi_test.go

示例13: handleCommand


//.........这里部分代码省略.........
		var uuidStr, subcommand string
		cmd.CommandArgs(1, &uuidStr, &subcommand)
		var uuid dvid.UUID
		if uuid, _, err = datastore.MatchingUUID(uuidStr); err != nil {
			return
		}

		switch subcommand {
		case "new":
			var typename, dataname string
			cmd.CommandArgs(3, &typename, &dataname)

			// Get TypeService
			var typeservice datastore.TypeService
			if typeservice, err = datastore.TypeServiceByName(dvid.TypeString(typename)); err != nil {
				return
			}

			// Create new data
			config := cmd.Settings()
			if _, err = datastore.NewData(uuid, typeservice, dvid.InstanceName(dataname), config); err != nil {
				return
			}
			reply.Text = fmt.Sprintf("Data %q [%s] added to node %s\n", dataname, typename, uuid)
			datastore.AddToRepoLog(uuid, []string{cmd.String()})

		case "rename":
			var name1, name2, passcode string
			cmd.CommandArgs(3, &name1, &name2, &passcode)
			oldname := dvid.InstanceName(name1)
			newname := dvid.InstanceName(name2)

			// Make sure this instance exists.
			if _, err = datastore.GetDataByUUIDName(uuid, oldname); err != nil {
				err = fmt.Errorf("Error trying to rename %q for UUID %s: %v", oldname, uuid, err)
				return
			}

			// Do the rename.
			if err = datastore.RenameData(uuid, oldname, newname, passcode); err != nil {
				err = fmt.Errorf("Error renaming data instance %q to %q: %v", oldname, newname, err)
				return
			}
			reply.Text = fmt.Sprintf("Renamed data instance %q to %q from DAG subgraph @ root %s\n", oldname, newname, uuid)

		case "branch":
			cmd.CommandArgs(3, &uuidStr)

			var assign *dvid.UUID
			if uuidStr == "" {
				assign = nil
			} else {
				u := dvid.UUID(uuidStr)
				assign = &u
			}
			var child dvid.UUID
			if child, err = datastore.NewVersion(uuid, fmt.Sprintf("branch of %s", uuid), assign); err != nil {
				return
			}
			reply.Text = fmt.Sprintf("Branch %s added to node %s\n", child, uuid)
			datastore.AddToRepoLog(uuid, []string{cmd.String()})

		case "merge":
			uuids := cmd.CommandArgs(2)

			parents := make([]dvid.UUID, len(uuids)+1)
开发者ID:tartavull,项目名称:dvid,代码行数:67,代码来源:rpc.go

示例14: instanceSelector

// instanceSelector retrieves the data instance given its complete string name and
// forwards the request to that instance's HTTP handler.
func instanceSelector(c *web.C, h http.Handler) http.Handler {
	fn := func(w http.ResponseWriter, r *http.Request) {
		if httpUnavailable(w) {
			return
		}

		var err error
		dataname := dvid.InstanceName(c.URLParams["dataname"])
		uuid, ok := c.Env["uuid"].(dvid.UUID)
		if !ok {
			msg := fmt.Sprintf("Bad format for UUID %q\n", c.Env["uuid"])
			BadRequest(w, r, msg)
			return
		}
		data, err := datastore.GetDataByUUIDName(uuid, dataname)
		if err != nil {
			BadRequest(w, r, err)
			return
		}
		v, err := datastore.VersionFromUUID(uuid)
		if err != nil {
			BadRequest(w, r, err)
			return
		}

		if data.Versioned() {
			// Make sure we aren't trying mutable methods on committed nodes.
			locked, err := datastore.LockedUUID(uuid)
			if err != nil {
				BadRequest(w, r, err)
				return
			}
			if locked && data.IsMutationRequest(r.Method, c.URLParams["keyword"]) {
				BadRequest(w, r, "Cannot do %s on endpoint %q of locked node %s", r.Method, c.URLParams["keyword"], uuid)
				return
			}
		} else {
			// Map everything to root version.
			v, err = datastore.GetRepoRootVersion(v)
			if err != nil {
				BadRequest(w, r, err)
				return
			}
		}
		ctx := datastore.NewVersionedCtx(data, v)

		// Also set the web request information in case logging needs it downstream.
		ctx.SetRequestID(middleware.GetReqID(*c))

		// Handle DVID-wide query string commands like non-interactive call designations
		queryStrings := r.URL.Query()

		// All HTTP requests are interactive so let server tally request.
		interactive := queryStrings.Get("interactive")
		if interactive == "" || (interactive != "false" && interactive != "0") {
			GotInteractiveRequest()
		}

		// TODO: setup routing for data instances as well.
		if config != nil && config.AllowTiming() {
			w.Header().Set("Timing-Allow-Origin", "*")
		}
		data.ServeHTTP(uuid, ctx, w, r)
	}
	return http.HandlerFunc(fn)
}
开发者ID:janelia-flyem,项目名称:dvid,代码行数:68,代码来源:web.go

示例15: repoResolveHandler

func repoResolveHandler(c web.C, w http.ResponseWriter, r *http.Request) {
	uuid, _, err := datastore.MatchingUUID(c.URLParams["uuid"])
	if err != nil {
		BadRequest(w, r, err)
		return
	}
	if r.Body == nil {
		BadRequest(w, r, "merge resolving requires JSON to be POSTed per API documentation")
		return
	}
	data, err := ioutil.ReadAll(r.Body)
	if err != nil {
		BadRequest(w, r, err)
		return
	}

	jsonData := struct {
		Data    []dvid.InstanceName `json:"data"`
		Note    string              `json:"note"`
		Parents []string            `json:"parents"`
	}{}
	if err := json.Unmarshal(data, &jsonData); err != nil {
		BadRequest(w, r, fmt.Sprintf("Malformed JSON request in body: %v", err))
		return
	}
	if len(jsonData.Data) == 0 {
		BadRequest(w, r, "Must specify at least one data instance using 'data' field")
		return
	}
	if len(jsonData.Parents) < 2 {
		BadRequest(w, r, "Must specify at least two parent UUIDs using 'parents' field")
		return
	}

	// Convert JSON of parents into []UUID and whether we need a child for them to add deletions.
	numParents := len(jsonData.Parents)
	oldParents := make([]dvid.UUID, numParents)
	newParents := make([]dvid.UUID, numParents, numParents) // UUID of any parent extension for deletions.
	for i, uuidFrag := range jsonData.Parents {
		uuid, _, err := datastore.MatchingUUID(uuidFrag)
		if err != nil {
			BadRequest(w, r, fmt.Sprintf("can't match parent %q: %v", uuidFrag, err))
			return
		}
		oldParents[i] = uuid
		newParents[i] = dvid.NilUUID
	}

	// Iterate through all k/v for given data instances, making sure we find any conflicts.
	// If any are found, remove them with first UUIDs taking priority.
	for _, name := range jsonData.Data {
		data, err := datastore.GetDataByUUIDName(uuid, name)
		if err != nil {
			BadRequest(w, r, err)
			return
		}

		if err := datastore.DeleteConflicts(uuid, data, oldParents, newParents); err != nil {
			BadRequest(w, r, fmt.Errorf("Conflict deletion error for data %q: %v", data.DataName(), err))
			return
		}
	}

	// If we have any new nodes to accomodate deletions, commit them.
	for i, oldUUID := range oldParents {
		if newParents[i] != oldUUID {
			err := datastore.Commit(newParents[i], "Version for deleting conflicts before merge", nil)
			if err != nil {
				BadRequest(w, r, "Error while creating new nodes to handle required deletions: %v", err)
				return
			}
		}
	}

	// Do the merge
	mt := datastore.MergeConflictFree
	newuuid, err := datastore.Merge(newParents, jsonData.Note, mt)
	if err != nil {
		BadRequest(w, r, err)
	} else {
		w.Header().Set("Content-Type", "application/json")
		fmt.Fprintf(w, "{%q: %q}", "child", newuuid)
	}
}
开发者ID:janelia-flyem,项目名称:dvid,代码行数:84,代码来源:web.go


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