本文整理汇总了C#中Classes.AddRecord方法的典型用法代码示例。如果您正苦于以下问题：C# Classes.AddRecord方法的具体用法？C# Classes.AddRecord怎么用？C# Classes.AddRecord使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Classes的用法示例。
在下文中一共展示了Classes.AddRecord方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C#代码示例。
示例1: foreach
//.........这里部分代码省略.........
double max_score = 0;
for (int k = 0; k < m._CandidateGlycopeptideRecords.Length; k++)
{
// Confirm glycan type matches with HCD prediction
bool process_result = false;
if ((e.GlycanType == GlypID.enmGlycanType.CS) || e.GlycanType == GlypID.enmGlycanType.HY)
{
if (m._CandidateGlycopeptideRecords[k].Glycan.numNeuAc >0)
process_result = true;
else
process_result = false;
}
else
process_result = true;
// Stupidly planned type conversion ; Just doing the bare minimum
GlypID.ETDScoring.clsETDScoringScanResults thisResult = new GlypID.ETDScoring.clsETDScoringScanResults();
thisResult.mdbl_parent_mz = e.ParentMz;
thisResult.mdbl_mono_mw = e.TransformResult.mdbl_mono_mw;
thisResult.mshort_cs = e.TransformResult.mshort_cs;
thisResult.mstr_glyco_site = m._CandidateGlycopeptideRecords[k].Sequence.nGlycoSite;
thisResult.mstr_nglyco_site = m._CandidateGlycopeptideRecords[k].Sequence.nGlycoSite;
thisResult.mstr_pep_seq = m._CandidateGlycopeptideRecords[k].Sequence.sequence;
thisResult.mdbl_glycan_mass = m._CandidateGlycopeptideRecords[k].GlycanMonoMass;
if (thisResult.mstr_pep_seq != "" && process_result)
{
double etd_score = _ETDScoring.ScoreETDSpectra(ref _MSMSPeaks, thisResult);
if (etd_score >= max_score)
{
thisResult.mdbl_etd_score = etd_score;
best_scoring_index = k;
max_score = etd_score;
}
}
}
// Store
if ((best_scoring_index != -1) && (max_score > e.ETDScore))
{
// Store
e.ETDScan = scan;
e.ETDMzs = msms_mzs;
e.ETDIntensities = msms_intensities;
e.ETDPeaks = new GlypID.Peaks.clsPeak[_MSMSPeaks.Length];
Array.Copy(_MSMSPeaks, e.ETDPeaks, _MSMSPeaks.Length);
e.ETDScore = max_score;
e.GP_Record = m._CandidateGlycopeptideRecords[best_scoring_index];
e.FalseHit = e.GP_Record.IsDecoy;
/* if (e.FalseHit)
_tMap._AllFalseHitsFDRScore.Add(e.ETDScore);
else
_tMap._AllTrueHitsFDRScore.Add(e.ETDScore) ; */
// m._AssociatedUMCRecords[i].ETDScanRep = scan;
}
}
}
}
// Store the most recent fragmentation event
if (e.HCDScore < 1)
{
/*FragEvents tEvent = new FragEvents(e);
m._AssociatedUMCRecords[i]._AssociatedFragEvents.Add(tEvent);*/
allobserved_frag_events.Add(e);
}
// _RawData.Close();
m._AssociatedUMCRecords[i]._AssociatedFragEvents.Clear();
for (int kk = 0; kk < allobserved_frag_events.Count; kk++)
{
FragEvents tempE = allobserved_frag_events[kk] ; //as FragEvents;
m._AssociatedUMCRecords[i]._AssociatedFragEvents.Add(tempE);
}
m._AssociatedUMCRecords[i].SetRepScores();
}
if (store_record)
_tMap.AddRecord(m);
}
});
if (_tMap._AllMLNRecords.Count != _glycoMap._AllMLNRecords.Count)
{
_glycoMap.ClearRecords();
for (int k = 0; k < _tMap._AllMLNRecords.Count; k++)
{
_glycoMap.AddRecord(_tMap._AllMLNRecords[k]);
}
}
// _glycoMap._AllTrueHitsFDRScore = _tMap._AllTrueHitsFDRScore;
//_glycoMap._AllFalseHitsFDRScore = _tMap._AllFalseHitsFDRScore;
_tMap.ClearRecords();
}示例2: ClusterRecordsOnCID
/// <summary>
/// Function to cluster CID spectra in each record.
/// </summary>
/// <param name="_glycoMap"></param>
/// <param name="_params"></param>
public void ClusterRecordsOnCID(ref Classes.MapRecord _glycoMap, ref Classes.Params _params)
{
Classes.MapRecord _tempMap = new MapRecord();
_tempMap._AssociatedDatasetNames = _glycoMap._AssociatedDatasetNames;
_tempMap._IsCID = _glycoMap._IsCID;
_tempMap._IsETD = _glycoMap._IsETD;
_tempMap._IsHCD = _glycoMap._IsHCD;
int Id = 0;
FragEvents tempE = new FragEvents();
for (int i = 0; i < _glycoMap._AllMLNRecords.Count; i++)
{
MultiAlignRecord m = new MultiAlignRecord();
m = _glycoMap._AllMLNRecords[i];
int num_records = m._AssociatedUMCRecords.Count;
short mincs = m.MinChargeStateObserved();
short maxcs = m.MaxChargeStateObserved();
for (short thiscs = mincs; thiscs <= maxcs; thiscs++)
{
int spectra_num = 0;
string cum_spectra_names = null;
List<string> cluster_names = new List<string>();
List<int> orphan_ids = new List<int>();
for (int j = 0; j < num_records; j++)
{
if (m._AssociatedUMCRecords[j]._AssociatedFragEvents.Count == 0)
{
// Not fragmented in this UMC but keep track of this but
// // This happens which means there was no fragmentation event then (or) HCD score was bad
if (m._AssociatedUMCRecords[j].Abundance > 0)
orphan_ids.Add(m._AssociatedUMCRecords[j].DatasetID);
}
for (int k = 0; k < m._AssociatedUMCRecords[j]._AssociatedFragEvents.Count; k++)
{
if ((m._AssociatedUMCRecords[j]._AssociatedFragEvents[k].CIDPeaks[0] != null) &&
(m._AssociatedUMCRecords[j]._AssociatedFragEvents[k].TransformResult.mshort_cs == thiscs))
{
string spectra_name = "Spectra_" + m._AssociatedUMCRecords[j].DatasetID + "_" + m._AssociatedUMCRecords[j]._AssociatedFragEvents[k].ID + "_" +
spectra_num + "_" + m._AssociatedUMCRecords[j]._AssociatedFragEvents[k].CIDScan;
GlypID.Peaks.clsPeak[] thisCIDPeaks = new GlypID.Peaks.clsPeak[m._AssociatedUMCRecords[j]._AssociatedFragEvents[k].CIDPeaks.Length];
Array.Copy(m._AssociatedUMCRecords[j]._AssociatedFragEvents[k].CIDPeaks, thisCIDPeaks, m._AssociatedUMCRecords[j]._AssociatedFragEvents[k].CIDPeaks.Length);
_CIDSpectralUtilities.AddPeaksToList(ref thisCIDPeaks, spectra_name);
spectra_num++;
if (cum_spectra_names != null)
cum_spectra_names = cum_spectra_names + "-" + spectra_name;
else
cum_spectra_names = spectra_name;
}
}
}
int num_clusters = _CIDSpectralUtilities.ClusterSpectraInList();
_CIDSpectralUtilities.GetClusterNames(ref cluster_names);
if (num_clusters > 1)
{
// Indicates glycoforms
bool debug = true;
debug = true;
}
for (int c = 0; c < num_clusters; c++)
{
m._ClusterNames.Add(cluster_names[c]);
}
_CIDSpectralUtilities.Clear();
}
_tempMap.AddRecord(m);
}
// Restore them.
_glycoMap.ClearRecords();
for (int i = 0; i < _tempMap._AllMLNRecords.Count; i++)
{
_glycoMap.AddRecord(_tempMap._AllMLNRecords[i]);
}
/*else
{
/* MultiAlignRecord _tempM = new MultiAlignRecord(m);
_tempM.ID = Id;
_tempMap.AddRecord(_tempM);
Id++; */
/* if (cum_spectra_names != null)
{
// Choose the spectra with the greatest SNR
num_clusters = 1;
cluster_names.Add(cum_spectra_names);
//.........这里部分代码省略.........