C++ typenameMDEventWorkspace::getExperimentInfo方法代码示例

  void FindPeaksMD::findPeaks(typename MDEventWorkspace<MDE, nd>::sptr ws)
  {
    if (nd < 3)
      throw std::invalid_argument("Workspace must have at least 3 dimensions.");

    progress(0.01, "Refreshing Centroids");

    // TODO: This might be slow, progress report?
    // Make sure all centroids are fresh
    ws->getBox()->refreshCentroid();

    typedef IMDBox<MDE,nd>* boxPtr;

    if (ws->getNumExperimentInfo() == 0)
      throw std::runtime_error("No instrument was found in the MDEventWorkspace. Cannot find peaks.");

    // TODO: Do we need to pick a different instrument info?
    ExperimentInfo_sptr ei = ws->getExperimentInfo(0);
    // Instrument associated with workspace
    Geometry::Instrument_const_sptr inst = ei->getInstrument();
    // Find the run number
    int runNumber = ei->getRunNumber();

    // Check that the workspace dimensions are in Q-sample-frame or Q-lab-frame.
    eDimensionType dimType;

    std::string dim0 = ws->getDimension(0)->getName();
    if (dim0 == "H")
    {
      dimType = HKL;
      throw std::runtime_error("Cannot find peaks in a workspace that is already in HKL space.");
    }
    else if (dim0 == "Q_lab_x")
    {
      dimType = QLAB;
    }
    else if (dim0 == "Q_sample_x")
      dimType = QSAMPLE;
    else
      throw std::runtime_error("Unexpected dimensions: need either Q_lab_x or Q_sample_x.");

    // Find the goniometer rotation matrix
    Mantid::Kernel::Matrix<double> goniometer(3,3, true); // Default IDENTITY matrix
    try
    {
      goniometer = ei->mutableRun().getGoniometerMatrix();
    }
    catch (std::exception & e)
    {
      g_log.warning() << "Error finding goniometer matrix. It will not be set in the peaks found." << std::endl;
      g_log.warning() << e.what() << std::endl;
    }

    /// Arbitrary scaling factor for density to make more manageable numbers, especially for older file formats.
    signal_t densityScalingFactor = 1e-6;

    // Calculate a threshold below which a box is too diffuse to be considered a peak.
    signal_t thresholdDensity = 0.0;
    thresholdDensity = ws->getBox()->getSignalNormalized() * DensityThresholdFactor * densityScalingFactor;
    g_log.notice() << "Threshold signal density: " << thresholdDensity << std::endl;

    // We will fill this vector with pointers to all the boxes (up to a given depth)
    typename std::vector<boxPtr> boxes;

    // Get all the MDboxes
    progress(0.10, "Getting Boxes");
    ws->getBox()->getBoxes(boxes, 1000, true);



    // TODO: Here keep only the boxes > e.g. 3 * mean.
    typedef std::pair<double, boxPtr> dens_box;

    // Map that will sort the boxes by increasing density. The key = density; value = box *.
    typename std::multimap<double, boxPtr> sortedBoxes;

    progress(0.20, "Sorting Boxes by Density");
    typename std::vector<boxPtr>::iterator it1;
    typename std::vector<boxPtr>::iterator it1_end = boxes.end();
    for (it1 = boxes.begin(); it1 != it1_end; it1++)
    {
      boxPtr box = *it1;
      double density = box->getSignalNormalized() * densityScalingFactor;
      // Skip any boxes with too small a signal density.
      if (density > thresholdDensity)
        sortedBoxes.insert(dens_box(density,box));
    }

    // List of chosen possible peak boxes.
    std::vector<boxPtr> peakBoxes;

    prog = new Progress(this, 0.30, 0.95, MaxPeaks);

    int64_t numBoxesFound = 0;
    // Now we go (backwards) through the map
    // e.g. from highest density down to lowest density.
    typename std::multimap<double, boxPtr>::reverse_iterator it2;
    typename std::multimap<double, boxPtr>::reverse_iterator it2_end = sortedBoxes.rend();
    for (it2 = sortedBoxes.rbegin(); it2 != it2_end; it2++)
    {
//.........这里部分代码省略.........