本文整理汇总了C++中U2OpStatus::addWarning方法的典型用法代码示例。如果您正苦于以下问题：C++ U2OpStatus::addWarning方法的具体用法？C++ U2OpStatus::addWarning怎么用？C++ U2OpStatus::addWarning使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类U2OpStatus的用法示例。
在下文中一共展示了U2OpStatus::addWarning方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C++代码示例。
示例1: load
//.........这里部分代码省略.........
seqImporter.addDefaultSymbolsBlock(gapSize, os);
sequenceStart += gapSize;
CHECK_OP_BREAK(os);
}
int sequenceLen = 0;
while (!os.isCoR()) {
do {
len = io->readLine(buff, DocumentFormat::READ_BUFF_SIZE);
CHECK_EXT(!io->hasError(), os.setError(io->errorString()), );
} while (len <= 0 && !io->isEof());
CHECK_EXT(!io->hasError(), os.setError(io->errorString()), );
if (len <= 0 && io->isEof()) {
break;
}
CHECK_EXT(!io->hasError(), os.setError(io->errorString()), );
buff[len] = 0;
if(buff[0] != fastaCommentStartChar && buff[0] != FastaFormat::FASTA_HEADER_START_SYMBOL){
len = TextUtils::remove(buff, len, TextUtils::WHITES);
if(len > 0){
seqImporter.addBlock(buff, len, os);
sequenceLen += len;
}
}else if( buff[0] == FastaFormat::FASTA_HEADER_START_SYMBOL){
headerReaded = true;
break;
}
CHECK_OP_BREAK(os);
os.setProgress(io->getProgress());
}
if (merge) {
memoryLocker.tryAcquire(headerLine.size());
CHECK_OP_BREAK(os);
headers.append(headerLine);
mergedMapping.append(U2Region(sequenceStart, sequenceLen));
} else {
if (objectsCountLimit > 0 && objects.size() >= objectsCountLimit) {
os.setError(FastaFormat::tr("File \"%1\" contains too many sequences to be displayed. "
"However, you can process these data using instruments from the menu <i>Tools -> NGS data analysis</i> "
"or pipelines built with Workflow Designer.")
.arg(io->getURL().getURLString()));
break;
}
memoryLocker.tryAcquire(800);
CHECK_OP_BREAK(os);
U2Sequence seq = seqImporter.finalizeSequenceAndValidate(os);
if (os.hasError() && os.getError() == U2SequenceImporter::EMPTY_SEQUENCE_ERROR) {
os.setError("");
emptySeqNames << headerLine;
continue;
}
sequenceRef.entityRef = U2EntityRef(dbiRef, seq.id);
//TODO parse header
U2StringAttribute attr(seq.id, DNAInfo::FASTA_HDR, headerLine);
con.dbi->getAttributeDbi()->createStringAttribute(attr, os);
CHECK_OP_BREAK(os);
objects << new U2SequenceObject(seq.visualName, U2EntityRef(dbiRef, seq.id));
CHECK_OP_BREAK(os);
U1AnnotationUtils::addAnnotations(objects, seqImporter.getCaseAnnotations(), sequenceRef, NULL, fs);
}
sequenceStart += sequenceLen;
sequenceNumber++;
ioLog.trace(QString("Sequence #%1 is processed").arg(sequenceNumber));
}
CHECK_OP_EXT(os, qDeleteAll(objects); objects.clear(), );
CHECK_EXT(!objects.isEmpty() || merge, os.setError(Document::tr("Document is empty.")), );
SAFE_POINT(headers.size() == mergedMapping.size(), "headers <-> regions mapping failed!", );
ioLog.trace("All sequences are processed");
if (!emptySeqNames.isEmpty()) {
QString warningMessage;
warningMessage.append(FastaFormat::tr("Loaded sequences: %1.\n").arg(sequenceNumber));
warningMessage.append(FastaFormat::tr("Skipped sequences: %1.\n").arg(emptySeqNames.size()));
warningMessage.append(FastaFormat::tr("The following sequences are empty:\n%1").arg(emptySeqNames.join(",\n")));
os.addWarning(warningMessage);
}
if (!merge) {
return;
}
U2Sequence seq = seqImporter.finalizeSequenceAndValidate(os);
CHECK_OP(os, );
sequenceRef.entityRef = U2EntityRef(dbiRef, seq.id);
U1AnnotationUtils::addAnnotations(objects, seqImporter.getCaseAnnotations(), sequenceRef, NULL, fs);
objects << new U2SequenceObject(seq.visualName, U2EntityRef(dbiRef, seq.id));
objects << DocumentFormatUtils::addAnnotationsForMergedU2Sequence( sequenceRef, dbiRef, headers, mergedMapping, fs );
if (headers.size() > 1) {
writeLockReason = QObject::tr("Document sequences were merged");
}
}