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C++ Spectrum::hasCVParam方法代码示例

本文整理汇总了C++中Spectrum::hasCVParam方法的典型用法代码示例。如果您正苦于以下问题:C++ Spectrum::hasCVParam方法的具体用法?C++ Spectrum::hasCVParam怎么用?C++ Spectrum::hasCVParam使用的例子?那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在Spectrum的用法示例。


在下文中一共展示了Spectrum::hasCVParam方法的1个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的C++代码示例。

示例1: update

PWIZ_API_DECL void SpectrumInfo::update(const Spectrum& spectrum, bool getBinaryData)
{
    *this = SpectrumInfo();
    clearBinaryData();

    id = spectrum.id;
    index = spectrum.index;
    scanNumber = id::valueAs<int>(spectrum.id, "scan");

    Scan dummy;
    const Scan& scan = spectrum.scanList.scans.empty() ? dummy : spectrum.scanList.scans[0];

    massAnalyzerType = CVID_Unknown;
    if (scan.instrumentConfigurationPtr.get())
        try
        {
            massAnalyzerType = scan.instrumentConfigurationPtr->componentList.analyzer(0)
                                        .cvParamChild(MS_mass_analyzer_type).cvid;
        }
        catch (out_of_range&)
        {
            // ignore out-of-range exception
        }

    scanEvent = scan.cvParam(MS_preset_scan_configuration).valueAs<int>(); 
    msLevel = spectrum.cvParam(MS_ms_level).valueAs<int>();
    isZoomScan = spectrum.hasCVParam(MS_zoom_scan);
    retentionTime = scan.cvParam(MS_scan_start_time).timeInSeconds();
    filterString = scan.cvParam(MS_filter_string).value;
    mzLow = spectrum.cvParam(MS_lowest_observed_m_z).valueAs<double>();        
    mzHigh = spectrum.cvParam(MS_highest_observed_m_z).valueAs<double>();        
    basePeakMZ = spectrum.cvParam(MS_base_peak_m_z).valueAs<double>();    
    basePeakIntensity = spectrum.cvParam(MS_base_peak_intensity).valueAs<double>();    
    totalIonCurrent = spectrum.cvParam(MS_total_ion_current).valueAs<double>();  
    ionInjectionTime = scan.cvParam(MS_ion_injection_time).valueAs<double>();

    UserParam userParamMonoisotopicMZ = scan.userParam("[Thermo Trailer Extra]Monoisotopic M/Z:");
    if (!userParamMonoisotopicMZ.name.empty())
        thermoMonoisotopicMZ = userParamMonoisotopicMZ.valueAs<double>();        
 
    for (vector<Precursor>::const_iterator it=spectrum.precursors.begin(); it!=spectrum.precursors.end(); ++it)
    {
        PrecursorInfo precursorInfo;
        precursorInfo.index = 0; // TODO
        if (!it->selectedIons.empty())
        {
            precursorInfo.mz = it->selectedIons[0].cvParam(MS_selected_ion_m_z).valueAs<double>();
            precursorInfo.charge = it->selectedIons[0].cvParam(MS_charge_state).valueAs<int>();
            precursorInfo.intensity = it->selectedIons[0].cvParam(MS_peak_intensity).valueAs<double>();
        }
        precursors.push_back(precursorInfo);
    }

    dataSize = spectrum.defaultArrayLength;
    if (getBinaryData && !spectrum.binaryDataArrayPtrs.empty())
        spectrum.getMZIntensityPairs(data);
}
开发者ID:tomas-pluskal,项目名称:pwiz,代码行数:57,代码来源:SpectrumInfo.cpp


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