C++ ModelHistory::setCreatedDate方法代码示例

END_TEST


START_TEST (test_Validation_ModelHistory3)
{
  ModelHistory * mh = new ModelHistory();
  fail_unless(mh != NULL);

  fail_unless (!(mh->hasRequiredAttributes()));

  Date * date = new Date(2007, 12, 30, 12, 15, 45, 1, 2, 0);
  mh->setCreatedDate(date);

  fail_unless (!(mh->hasRequiredAttributes()));

  mh->setModifiedDate(date);

  fail_unless (!(mh->hasRequiredAttributes()));

  ModelCreator * mc = new ModelCreator();
  mc->setFamilyName("Keating");

  mh->addCreator(mc);

  fail_unless (!(mh->hasRequiredAttributes()));
  
  delete mh;
}

END_TEST

START_TEST ( test_ModelHistory_copyConstructor )
{
  ModelHistory * mh = new ModelHistory();
  
  ModelCreator *mc = new ModelCreator();
  mc->setFamilyName("Keating");
  mc->setGivenName("Sarah");
  mc->setEmail("[email protected]");

  mh->addCreator(mc);
  delete mc;
    
  Date * date = new Date(2005, 12, 30, 12, 15, 45, 1, 2, 0);
  
  mh->setCreatedDate(date);
  delete date;

  fail_unless(mh->getCreatedDate()->getMonth() == 12);
  fail_unless(mh->getCreatedDate()->getSecond() == 45);

  fail_unless(static_cast <ModelCreator*>
    (mh->getListCreators()->get(0))->getFamilyName() == "Keating");

  ModelHistory* mh2=new ModelHistory(*mh);

  fail_unless(mh2->getCreatedDate()->getMonth() == 12);
  fail_unless(mh2->getCreatedDate()->getSecond() == 45);

  fail_unless(static_cast <ModelCreator*>(mh2->getListCreators()->get(0))->getFamilyName() == "Keating");

  delete mh2;
  delete mh;
}

int
main (int argc, char *argv[])
{

  SBMLDocument* d;
  unsigned int  errors;

  if (argc != 3)
  {
    cout << endl
         << "  usage: addModelHistory <input-filename> <output-filename>" << endl
         << endl;
    return 2;
  }


  d      = readSBML(argv[1]);
  errors = d->getNumErrors();

  if (errors > 0)
  {
    cout << "Read Error(s):" << endl;
	  d->printErrors(cout);

    cout << "Correct the above and re-run." << endl;
  }
  else
  {
    ModelHistory * h = new ModelHistory();

    ModelCreator *c = new ModelCreator();
    c->setFamilyName("Keating");
    c->setGivenName("Sarah");
    c->setEmail("[email protected]");
    c->setOrganization("University of Hertfordshire");

    int status = h->addCreator(c);
	printStatus("Status for addCreator: ", status);


    Date * date = new Date("1999-11-13T06:54:32");
    Date * date2 = new Date("2007-11-30T06:54:00-02:00");
   
    status = h->setCreatedDate(date);
	printStatus("Set created date:      ", status);

    status = h->setModifiedDate(date2);
	printStatus("Set modified date:     ", status);

    status = d->getModel()->setModelHistory(h);
	printStatus("Set model history:     ", status);

  
    writeSBML(d, argv[2]);
  }

  delete d;
  return errors;
}

END_TEST


START_TEST (test_RDFAnnotation2_modelWithHistoryAndMultipleModifiedDates)
{
  ModelHistory * h = new ModelHistory();

  ModelCreator *c = new ModelCreator();
  c->setFamilyName("Keating");
  c->setGivenName("Sarah");

  h->addCreator(c);

  Date * d = new Date(2005, 2, 2, 14, 56, 11);
  h->setCreatedDate(d);
  h->addModifiedDate(d);
  h->addModifiedDate(d);
  m2->unsetModelHistory();

  m2->setModelHistory(h);

  XMLNode *ann = RDFAnnotationParser::parseModelHistory(m2);

  const char * expected =
    "<annotation>\n"
		"  <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n"
		"    <rdf:Description rdf:about=\"#_000001\">\n"
		"      <dc:creator rdf:parseType=\"Resource\">\n"
		"        <rdf:Bag>\n"
		"          <rdf:li rdf:parseType=\"Resource\">\n"
		"            <vCard:N rdf:parseType=\"Resource\">\n"
		"              <vCard:Family>Keating</vCard:Family>\n"
		"              <vCard:Given>Sarah</vCard:Given>\n"
		"            </vCard:N>\n"
		"          </rdf:li>\n"
		"        </rdf:Bag>\n"
		"      </dc:creator>\n"
		"      <dcterms:created rdf:parseType=\"Resource\">\n"
		"        <dcterms:W3CDTF>2005-02-02T14:56:11Z</dcterms:W3CDTF>\n"
		"      </dcterms:created>\n"
		"      <dcterms:modified rdf:parseType=\"Resource\">\n"
		"        <dcterms:W3CDTF>2005-02-02T14:56:11Z</dcterms:W3CDTF>\n"
		"      </dcterms:modified>\n"
		"      <dcterms:modified rdf:parseType=\"Resource\">\n"
		"        <dcterms:W3CDTF>2005-02-02T14:56:11Z</dcterms:W3CDTF>\n"
		"      </dcterms:modified>\n"
		"    </rdf:Description>\n"
		"  </rdf:RDF>\n"
    "</annotation>";

  fail_unless( equals(expected, ann->toXMLString().c_str()) );
  
  delete c;
  delete d;
  delete h;
  delete ann;
}

ModelHistory*
RDFAnnotationParser::parseRDFAnnotation(const XMLNode * annotation)
{
  const string&  name = annotation->getName();
  const XMLNode*  RDFTop = NULL;
  ModelHistory * history = NULL;
  ModelCreator* creator = NULL;
  Date * modified = NULL;
  Date * created = NULL;
  unsigned int n = 0;

  // need to find the RDF description opening annotation
  if (!name.empty())
  {
    if (name == "annotation" && annotation->getNumChildren() > 0)
    {
      while (n < annotation->getNumChildren())
      {
	      const string &name1 = annotation->getChild(n).getName();
	      if (!name1.empty())
	      {
	        if (name1 == "RDF")
	        {
	          if (annotation->getChild(n).getNumChildren() > 0)
	          {
	            RDFTop = &(annotation->getChild(n).getChild(0));
	            break;
	          }
	        }
	      }
	      n++;
      }
    }
  }

  // find creation nodes and create history
  
  n = 0;
  if (RDFTop)
  {
	  history = new ModelHistory();
    while (n < RDFTop->getNumChildren())
    {
      const string &prefix = RDFTop->getChild(n).getPrefix();
      if (!prefix.empty())
      {
	      if (prefix == "dc")
	      {
          // this should be the Bag node containing the list of creators
          const XMLNode *creatorNode = &(RDFTop->getChild(n).getChild(0));
          for (unsigned int c = 0; c < creatorNode->getNumChildren(); c++)
          {
	          creator = new ModelCreator(creatorNode->getChild(c));
	          history->addCreator(creator);
                  delete creator;
          }
	      }
	      else if (prefix == "dcterms")
	      {
	        const string &name2 = RDFTop->getChild(n).getName();
	        if (!name2.empty())
	        {
	          if (RDFTop->getChild(n).getNumChildren() > 0
		          && RDFTop->getChild(n).getChild(0).getNumChildren() > 0)
	          {
	            if (name2 == "created")
	            {
		            created = new Date(RDFTop->getChild(n).getChild(0).
				              getChild(0).getCharacters());
		            history->setCreatedDate(created);
                            delete created;
	            }
	            else if (name2 == "modified")
	            {
		            modified = new Date(RDFTop->getChild(n).getChild(0).
				                getChild(0).getCharacters());
		            history->addModifiedDate(modified);
                            delete modified;
	            }
	          }
	        }
	      }
      }
      n++;
    }
  }
  

  return history;

}

END_TEST


START_TEST (test_RDFAnnotation2_modelWithHistoryAndCVTerms)
{
  ModelHistory * h = new ModelHistory();

  ModelCreator *c = new ModelCreator();
  c->setFamilyName("Keating");
  c->setGivenName("Sarah");

  h->addCreator(c);

  Date *d = new Date(2008, 11, 17, 18, 37, 0, 0, 0, 0);
  h->setCreatedDate(d);
  h->setModifiedDate(d);

  m2->unsetModelHistory();

  m2->setModelHistory(h);

  CVTerm *cv = new CVTerm();
  cv->setQualifierType(BIOLOGICAL_QUALIFIER);
  cv->setBiologicalQualifierType(BQB_IS_VERSION_OF);
  cv->addResource("http://www.geneontology.org/#GO:0005892");

  m2->addCVTerm(cv);
  XMLNode *ann = RDFAnnotationParser::parseModelHistory(m2);

  const char * expected =
    "<annotation>\n"
		"  <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n"
		"    <rdf:Description rdf:about=\"#_000001\">\n"
		"      <dc:creator rdf:parseType=\"Resource\">\n"
		"        <rdf:Bag>\n"
		"          <rdf:li rdf:parseType=\"Resource\">\n"
		"            <vCard:N rdf:parseType=\"Resource\">\n"
		"              <vCard:Family>Keating</vCard:Family>\n"
		"              <vCard:Given>Sarah</vCard:Given>\n"
		"            </vCard:N>\n"
		"          </rdf:li>\n"
		"        </rdf:Bag>\n"
		"      </dc:creator>\n"
    "      <dcterms:created rdf:parseType=\"Resource\">\n"
    "        <dcterms:W3CDTF>2008-11-17T18:37:00Z</dcterms:W3CDTF>\n"
    "      </dcterms:created>\n"
    "      <dcterms:modified rdf:parseType=\"Resource\">\n"
    "        <dcterms:W3CDTF>2008-11-17T18:37:00Z</dcterms:W3CDTF>\n"
    "      </dcterms:modified>\n"
		"      <bqbiol:isVersionOf>\n"
		"        <rdf:Bag>\n"
		"          <rdf:li rdf:resource=\"http://www.geneontology.org/#GO:0005892\"/>\n"
		"        </rdf:Bag>\n"
		"      </bqbiol:isVersionOf>\n"
		"    </rdf:Description>\n"
		"  </rdf:RDF>\n"
    "</annotation>";

  if (ann != NULL) 
  {
    fail_unless( equals(expected, ann->toXMLString().c_str()) );
  }
  else
  {
    fail("parseModelHistory failed");
  }
}

ModelHistory*
RDFAnnotationParser::deriveHistoryFromAnnotation(
     const XMLNode * annotation)
{
  ModelHistory * history = NULL;

  if (annotation == NULL)
    return history;

  // the annotation passed in may have a toplevel annotation tag BUT
  // it may not be- so need to check
  // if it isnt then it must be RDF or we do not have an rdf annotation
  bool topLevelIsAnnotation = false;
  if (annotation->getName() == "annotation")
  {
    topLevelIsAnnotation = true;
  }

  const XMLNode* RDFDesc = NULL;
  if (topLevelIsAnnotation == true)
  {
    RDFDesc =  &(annotation->getChild("RDF").getChild("Description"));
  }
  else
  {
    if (annotation->getName() == "RDF")
    {
      RDFDesc = &(annotation->getChild("Description"));
    }
  }
  

  ModelCreator* creator = NULL;
  Date * modified = NULL;
  Date * created = NULL;
	static const XMLNode outOfRange;

  // find creation nodes and create history
  
  if (RDFDesc != NULL)
  {
	  history = new ModelHistory();

    const XMLNode *creatorNode = &(RDFDesc->getChild("creator").getChild("Bag"));
    if (creatorNode->equals(outOfRange) == false)
    {
      for (unsigned int c = 0; c < creatorNode->getNumChildren(); c++)
      {
        creator = new ModelCreator(creatorNode->getChild(c));
        history->addCreator(creator);
        delete creator;
      }
    }
 
    const XMLNode *createdNode = &(RDFDesc->getChild("created").getChild("W3CDTF"));
    if (createdNode->equals(outOfRange) == false)
    {
      if (createdNode->getChild(0).isText() == true)
      {
        created = new Date(createdNode->getChild(0).getCharacters());
        history->setCreatedDate(created);
        delete created;
      }
    }

    /* there are possibly more than one modified elements */
    for (unsigned int n = 0; n < RDFDesc->getNumChildren(); n++)
    {
      if (RDFDesc->getChild(n).getName() == "modified")
      {
        const XMLNode *modifiedNode = &(RDFDesc->getChild(n).getChild("W3CDTF"));
        if (modifiedNode->equals(outOfRange) == false)
        {
          if (modifiedNode->getChild(0).isText() == true)
          {
            modified = new Date(modifiedNode->getChild(0).getCharacters());
            history->addModifiedDate(modified);
            delete modified;
          }
        }
      }
    }
    history->resetModifiedFlags();
  }

  return history;
}