本文整理汇总了C++中Genome::getSequence方法的典型用法代码示例。如果您正苦于以下问题：C++ Genome::getSequence方法的具体用法？C++ Genome::getSequence怎么用？C++ Genome::getSequence使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Genome的用法示例。
在下文中一共展示了Genome::getSequence方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C++代码示例。
示例1: createCallBack
void SequenceUpdateTest::createCallBack(Alignment *alignment) {
hal_size_t alignmentSize = alignment->getNumGenomes();
CuAssertTrue(_testCase, alignmentSize == 0);
Genome *ancGenome = alignment->addRootGenome("AncGenome", 0);
size_t numSequences = 1000;
vector<Sequence::Info> seqVec;
for (size_t i = 0; i < numSequences; ++i) {
hal_size_t len = 1 + i * 5 + i;
string name = "sequence" + std::to_string(i);
seqVec.push_back(Sequence::Info(name, len, i, i * 2));
}
ancGenome->setDimensions(seqVec);
alignment->closeGenome(ancGenome);
ancGenome = alignment->openGenome("AncGenome");
vector<Sequence::UpdateInfo> updateVec;
for (size_t i = 0; i < numSequences / 2; ++i) {
const Sequence *sequence = ancGenome->getSequence("sequence" + std::to_string(i));
updateVec.push_back(Sequence::UpdateInfo(sequence->getName(), i * 7));
}
ancGenome->updateTopDimensions(updateVec);
updateVec.clear();
for (size_t i = 0; i < numSequences / 3; ++i) {
const Sequence *sequence = ancGenome->getSequence("sequence" + std::to_string(i));
updateVec.push_back(Sequence::UpdateInfo(sequence->getName(), i * 5));
}
ancGenome->updateBottomDimensions(updateVec);
}示例2: writeSequences
void LodExtract::writeSequences(const Genome* inParent,
const vector<const Genome*>& inChildren)
{
vector<const Genome*> inGenomes = inChildren;
inGenomes.push_back(inParent);
const Genome* outParent = _outAlignment->openGenome(inParent->getName());
(void)outParent;
assert(outParent != NULL && outParent->getNumBottomSegments() > 0);
string buffer;
for (hal_size_t i = 0; i < inGenomes.size(); ++i)
{
const Genome* inGenome = inGenomes[i];
Genome* outGenome = _outAlignment->openGenome(inGenome->getName());
if (inGenome == inParent || outGenome->getNumChildren() == 0)
{
SequenceIteratorConstPtr inSeqIt = inGenome->getSequenceIterator();
SequenceIteratorConstPtr end = inGenome->getSequenceEndIterator();
for (; inSeqIt != end; inSeqIt->toNext())
{
const Sequence* inSequence = inSeqIt->getSequence();
if (inSequence->getSequenceLength() > 0)
{
Sequence* outSequence = outGenome->getSequence(inSequence->getName());
assert(outSequence != NULL);
inSequence->getString(buffer);
outSequence->setString(buffer);
}
}
}
}
}